Patents by Inventor James R. Swartz

James R. Swartz has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20220281924
    Abstract: Genetically modified HBc polypeptides are provided.
    Type: Application
    Filed: January 21, 2022
    Publication date: September 8, 2022
    Inventors: James R. Swartz, Rinchu Mathew, Marcus John Rohovie, Maya Nagasawa
  • Publication number: 20220135650
    Abstract: Compositions and methods are provided relating to engineered CD47 extracellular domain (ECD) proteins.
    Type: Application
    Filed: March 2, 2020
    Publication date: May 5, 2022
    Inventors: James R. Swartz, Maya Nagasawa
  • Patent number: 11261216
    Abstract: Genetically modified HBc polypeptides are provided.
    Type: Grant
    Filed: December 23, 2019
    Date of Patent: March 1, 2022
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: James R. Swartz, Rinchu Mathew, Marcus John Rohovie, Maya Nagasawa
  • Publication number: 20200231632
    Abstract: Genetically modified HBc polypeptides are provided.
    Type: Application
    Filed: December 23, 2019
    Publication date: July 23, 2020
    Inventors: James R. Swartz, Rinchu Mathew, Marcus John Rohovie, Maya Nagasawa
  • Patent number: 10036001
    Abstract: The embodiments described herein pertain to cells, and methods for preparing cells, that can be used as biocatalysts by altering enzymes that compete for a substrate or product of a pathway of interest such that the targeted enzyme is sensitive to a site-specific protease, which protease is expressed but relocated in the cell to a site where it is not in contact with the targeted enzyme in the intact cell. Upon cell lysis, the protease contacts the target enzyme, which is then inactivated by protease cleavage.
    Type: Grant
    Filed: November 14, 2014
    Date of Patent: July 31, 2018
    Assignees: The Board of Trustees of the Leland Stanford Junior University, GreenLight Biosciences, Inc.
    Inventor: James R. Swartz
  • Patent number: 10006062
    Abstract: Genetically manipulated cells, lysates of such cells, systems, and methods of use thereof are provided, where one or more enzymes in a pathway of interest are genetically modified to incorporate a peptide sequence that provides for relocation of the protein, e.g., to the periplasm, so as to sequester the enzyme, and where the enzyme controls flux in the pathway of interest.
    Type: Grant
    Filed: February 11, 2015
    Date of Patent: June 26, 2018
    Assignees: The Board of Trustees of the Leland Stanford Junior University, GreenLight Biosciences, Inc.
    Inventor: James R. Swartz
  • Publication number: 20170159058
    Abstract: The present disclosure relates, in some aspects, to cell-free methods and systems for large-scale conversion of methane to isobutanol, comprising combining, in a bioreactor at elevated pressure, methane, oxygen, and cell lysates containing methane monooxygenase, methanol dehydrogenase, and enzymes that catalyze the conversion of formaldehyde to isobutanol, to form a cell-free reaction mixture, and incubating under suitable conditions the cell-free reaction to convert methane to isobutanol.
    Type: Application
    Filed: February 17, 2017
    Publication date: June 8, 2017
    Applicant: GreenLight Biosciences, Inc.
    Inventors: William Jeremy Blake, James R. Swartz
  • Patent number: 9637522
    Abstract: Vaccine compositions and methods of producing and using the same are provided, which compositions comprise a modified HA stem domain in a trimeric configuration.
    Type: Grant
    Filed: May 23, 2013
    Date of Patent: May 2, 2017
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Yuan Lu, James R. Swartz
  • Patent number: 9611487
    Abstract: The present disclosure relates, in some aspects, to cell-free methods and systems for large-scale conversion of methane to isobutanol, comprising combining, in a bioreactor at elevated pressure, methane, oxygen, and cell lysates containing methane monooxygenase, methanol dehydrogenase, and enzymes that catalyze the conversion of formaldehyde to isobutanol, to form a cell-free reaction mixture, and incubating under suitable conditions the cell-free reaction to convert methane to isobutanol.
    Type: Grant
    Filed: December 20, 2013
    Date of Patent: April 4, 2017
    Assignee: GreenLight Biosciences, Inc.
    Inventors: William Jeremy Blake, James R. Swartz
  • Patent number: 9550813
    Abstract: Intermolecular disulfide stabilized foldon polypeptides are provided.
    Type: Grant
    Filed: May 22, 2013
    Date of Patent: January 24, 2017
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Yuan Lu, James R. Swartz
  • Publication number: 20160115558
    Abstract: Methods are provided for controlling metabolic flux rate in a cell-free system comprising a complex set of enzymes, to produce a desired product of a pathway of interest. In the methods of the invention, measurements of metabolic performance parameters are taken by continuous monitoring or intermittent monitoring. Based on the metabolic performance parameters, the system is modified by one or more steps comprising: (i) altering enzyme levels in the cell-free system; (ii) altering feed rate of a substrate that controls redox flux or carbon flux to the cell-free system; (iii) altering O2 addition to the cell-free system; (iv) controlling efficiency of electron transport system by altering leakage across a membrane; wherein enzymes present in the pathway of interest catalyze production of a desired product.
    Type: Application
    Filed: June 5, 2014
    Publication date: April 28, 2016
    Applicants: GreenLight Biosciences, Inc., The Board of Trustees of the Leland Stanford Junior University
    Inventor: James R. Swartz
  • Patent number: 9255255
    Abstract: Methods are provided for a one step synthesis of polypeptide polymers or co-polymers. The polymers or co-polymers can be linear or branched. In the methods of the invention, the coding sequence for the polypeptide(s) to be polymerized is altered by introducing one or more codons for an nonnatural amino acid, which coding sequence is then utilized to produce the cognate polypeptide. The nonnatural amino acids are selected to be reactive with each other in a bioorthogonal reaction, and are combined in a conjugation reaction with the desired components of the polymer.
    Type: Grant
    Filed: March 4, 2014
    Date of Patent: February 9, 2016
    Assignee: THE BOARD OF TRUSTEES OF THE LELAND STANFORD JUNIOR UNIVERSITY
    Inventors: Cem Albayrak, James R. Swartz, Yuan Lu
  • Patent number: 9133486
    Abstract: Compositions of a fusion protein comprising a spatially tethered ferredoxin-NADP-reductase (FNR) and an active [FeFe] hydrogenase, genetic sequences encoding such fusion proteins, and methods of use thereof are provided. The fusion proteins of the invention link an FNR polypeptide to an active [FeFe] hydrogenase through a polypeptide linker. The fusion protein facilitates improved electron transfer through a ferredoxin, and allows direct electron transfer from NADPH to the hydrogenase.
    Type: Grant
    Filed: March 8, 2013
    Date of Patent: September 15, 2015
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Phillip Richard Smith, James R. Swartz
  • Publication number: 20150191753
    Abstract: Genetically manipulated cells, lysates of such cells, systems, and methods of use thereof are provided, where one or more enzymes in a pathway of interest are genetically modified to incorporate a peptide sequence that provides for relocation of the protein, e.g., to the periplasm, so as to sequester the enzyme, and where the enzyme controls flux in the pathway of interest.
    Type: Application
    Filed: February 11, 2015
    Publication date: July 9, 2015
    Applicants: The Board of Trustees of the Leland Stanford Junior University, GreenLight Biosciences, Inc.
    Inventor: James R. Swartz
  • Publication number: 20150141616
    Abstract: Intermolecular disulfide stabilized foldon polypeptides are provided.
    Type: Application
    Filed: May 22, 2013
    Publication date: May 21, 2015
    Inventors: Yuan Lu, James R. Swartz
  • Publication number: 20150132331
    Abstract: Vaccine compositions and methods of producing and using the same are provided, which compositions comprise a modified HA stem domain in a trimeric configuration.
    Type: Application
    Filed: May 23, 2013
    Publication date: May 14, 2015
    Inventors: Yuan Lu, James R. Swartz
  • Publication number: 20150064751
    Abstract: The embodiments described herein pertain to cells, and methods for preparing cells, that can be used as biocatalysts by altering enzymes that compete for a substrate or product of a pathway of interest such that the targeted enzyme is sensitive to a site-specific protease, which protease is expressed but relocated in the cell to a site where it is not in contact with the targeted enzyme in the intact cell. Upon cell lysis, the protease contacts the target enzyme, which is then inactivated by protease cleavage.
    Type: Application
    Filed: November 14, 2014
    Publication date: March 5, 2015
    Applicants: The Board of Trustees of the Leland Stanford Junior University, GreenLight Biosciences, Inc.
    Inventor: James R. Swartz
  • Patent number: 8956833
    Abstract: Genetically manipulated cells, lysates of such cells, systems, and methods of use thereof are provided, where one or more enzymes in a pathway of interest are genetically modified to incorporate a peptide sequence that provides for relocation of the protein, e.g., to the periplasm, so as to sequester the enzyme, and where the enzyme controls flux in the pathway of interest.
    Type: Grant
    Filed: May 6, 2011
    Date of Patent: February 17, 2015
    Assignees: GreenLight Biosciences, Inc., The Board of Trustees of the Leland Stanford Junior University
    Inventor: James R. Swartz
  • Patent number: 8916358
    Abstract: The embodiments described herein pertain to cells, and methods for preparing cells, that can be used as biocatalysts by altering enzymes that compete for a substrate or product of a pathway of interest such that the targeted enzyme is sensitive to a site-specific protease, which protease is expressed but relocated in the cell to a site where it is not in contact with the targeted enzyme in the intact cell. Upon cell lysis, the protease contacts the target enzyme, which is then inactivated by protease cleavage.
    Type: Grant
    Filed: August 31, 2011
    Date of Patent: December 23, 2014
    Assignees: GreenLight Biosciences, Inc., The Board of Trustees of the Leland Stanford Junior University
    Inventor: James R. Swartz
  • Publication number: 20140315276
    Abstract: Methods are provided for a one step synthesis of polypeptide polymers or co-polymers. The polymers or co-polymers can be linear or branched. In the methods of the invention, the coding sequence for the polypeptide(s) to be polymerized is altered by introducing one or more codons for an nonnatural amino acid, which coding sequence is then utilized to produce the cognate polypeptide. The nonnatural amino acids are selected to be reactive with each other in a bioorthogonal reaction, and are combined in a conjugation reaction with the desired components of the polymer.
    Type: Application
    Filed: March 4, 2014
    Publication date: October 23, 2014
    Inventors: Cem Albayrak, James R. Swartz, Yuan Lu