Patents by Inventor Jay Shafto

Jay Shafto has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230381782
    Abstract: A nucleic acid sequencing system may include non-planar substrates coupled to the outer surface of a rotating drum. The substrates may be curved and include a plurality of nucleic acid samples. A detection system, including for example an objective and a camera, may detect sequencing events on the non-planar substrate while the non-planar substrate is rotated relative to the detection system around a longitudinal axis of the drum by the actuation system.
    Type: Application
    Filed: November 2, 2021
    Publication date: November 30, 2023
    Inventors: Paul Lundquist, Joon Yang, Jon Bartman, Chintang Yen, Razvan Chirita, Kee Tsz Woo, Jay Shafto, Michelle Jarrell, Wei Wang
  • Publication number: 20230295696
    Abstract: Provided are a method for loading a nucleic acid molecule, for example nucleic acid nanoball (e.g., DNA nanoball (DNB)), on a solid support, and a kit for the method.
    Type: Application
    Filed: July 29, 2020
    Publication date: September 21, 2023
    Inventors: Jay Shafto, Radoje Drmanac, Snezana Drmanac, Chongjun Xu, Meihua Gong, Ping Wang, Xiaojuan Long, Wei Zhao, Huan Luo, Hui Jiang, Jian Liu
  • Publication number: 20220403466
    Abstract: A nucleic acid sequencing system may include a substrate coupled to a rotating disk. The substrate may include a plurality of nucleic acid samples. A detection system, including for example an objective and a camera, may detect sequencing events on the substrate while the substrate is rotated relative to the detection system around a rotational axis of the substrate, perpendicular to a surface of the substrate, by the actuation system.
    Type: Application
    Filed: June 14, 2022
    Publication date: December 22, 2022
    Inventors: Paul Lundquist, Chintang Yen, Andriy Tspuryk, Joon Yang, Jon Bartman, Razvan Chirita, Jay Shafto, Michelle Jarrell, Wei Wang, Clark Reyes
  • Publication number: 20210405337
    Abstract: Embodiments of the disclosure include methods and systems for nucleic acid sequencing that may include an objective coupled to an actuator, wherein the actuator is configured to move the objective over a surface of a substrate. In some embodiments, a droplet may be disposed on the surface of the substrate, and the droplet may be moved along with the objective. The distal end of the objective may include a material that provides a higher friction against the droplet than a material of the surface of the substrate. In some embodiments, the distal end of the objective may be immersed in a fluid as it is moved over the surface of the substrate. The substrate may include vertical walls within a region to retain the fluid.
    Type: Application
    Filed: June 22, 2021
    Publication date: December 30, 2021
    Inventors: Paul Lundquist, Jay Shafto, Joyce Huang, Ziyi Wu
  • Publication number: 20210162365
    Abstract: A gene chip includes a chip carrier, a plurality of DNA nanoballs assembled on the chip carrier, and a polymer film formed on the chip carrier and wrapping the DNA nanoballs. The polymer film includes at least one of a film of a positively charged polymer, a film of a positively charged polymer which is modified, a film of a zwitterionic polymer, and a composite polymer film. The composite polymer film is formed by a layer-by-layer self-assembly process of a positively charged polymer and a negatively charged polymer. The gene chip has good sequencing quality and different functions can be achieved by coating with different polymers, such as the chip surface rapidly drying out and surface non-specific adsorption. A method of preparing a gene chip is further disclosed.
    Type: Application
    Filed: August 15, 2018
    Publication date: June 3, 2021
    Inventors: ZHAO-HUI WANG, HUI WANG, CHENG-MEI XING, HAN-DONG LI, WEN-WEI ZHANG, Jay Shafto, MEI-HUA GONG, JIN YANG, YIN-LING LUO, ZHEN-HUA ZHANG, YUAN LI, XUE-QIN JIANG
  • Patent number: 8765359
    Abstract: Methods of preparing organosilane-functionalized regions on a substrate surface and more specifically fabricating patterned functionalized substrates suitable to be optically read, the methods generally comprising employing a vapor deposition process of an organosilane gas onto a lithographically patterned silicon surface followed by removal of the patterning media in a bath of organic solvents and ultrasonic excitation. The inventive methods provide optimized surface density of functional species while avoiding deleterious effects that can occur when lithographically patterned substrates are exposed to various gaseous species during the functionalization process.
    Type: Grant
    Filed: June 5, 2012
    Date of Patent: July 1, 2014
    Assignee: Complete Genomics, Inc.
    Inventors: Andres Fernandez, Shaunak Roy, Jay Shafto, Norman L. Burns, Claudia Richter, Pierre F. Indermuhle
  • Publication number: 20130323652
    Abstract: Methods of preparing organosilane-functionalized regions on a substrate surface and more specifically fabricating patterned functionalized substrates suitable to be optically read, the methods generally comprising employing a vapor deposition process of an organosilane gas onto a lithographically patterned silicon surface followed by removal of the patterning media in a bath of organic solvents and ultrasonic excitation. The inventive methods provide optimized surface density of functional species while avoiding deleterious effects that can occur when lithographically patterned substrates are exposed to various gaseous species during the functionalization process.
    Type: Application
    Filed: June 5, 2012
    Publication date: December 5, 2013
    Applicant: Complete Genomics, Inc.
    Inventors: Andres Fernandez, Shaunak Roy, Jay Shafto, Norman L. Burns, Claudia Richter, Pierre F. Indermuhle