Patents by Inventor Jay Short

Jay Short has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20050130156
    Abstract: The invention provides methods for identifying and purifying double-stranded polynucleotides lacking base pair mismatches, insertion/deletion loops and/or nucleotide gaps. The invention provides libraries of nucleic acid building blocks and methods for generating any nucleic acid sequence, including synthetic genes, antisense constructs and polypeptide coding sequences. The invention provides chimeric antigen binding molecules and the nucleic acids that encode them.
    Type: Application
    Filed: January 14, 2003
    Publication date: June 16, 2005
    Inventors: Gerhard Frey, Jay Short, Lilian Parra-Gessert
  • Publication number: 20050123991
    Abstract: The invention relates to hydrolases and to polynucleotides encoding the hydrolases. In addition, the invention relates to the use of these hydrolase enzymes in kinetic resolution.
    Type: Application
    Filed: February 2, 2005
    Publication date: June 9, 2005
    Inventors: Jay Short, Eric Mathur, Markus Baumann, Uwe Bornscheuer
  • Publication number: 20050124010
    Abstract: This invention relates to the field of cellular and whole organism engineering. Specifically, this invention relates to a cellular transformation, directed evolution, and screening method for creating novel transgenic organisms having desirable properties. Thus in one aspect, this invention relates to a method of generating a transgenic organism, such as a microbe or a plant, having a plurality of traits that are diffenentially activatable.
    Type: Application
    Filed: October 1, 2001
    Publication date: June 9, 2005
    Inventors: Jay Short, Pengcheng Fu, Jing Wei, Michael Levin, Martin Latterich
  • Publication number: 20050123984
    Abstract: The invention relates to carboxymethyl cellulases and to polynucleotides encoding the carboxymethyl cellulases. In addition methods of designing new carboxymethyl cellulases and method of use thereof are also provided. The carboxymethyl cellulases have increased activity and stability at increased pH and temperature.
    Type: Application
    Filed: January 11, 2005
    Publication date: June 9, 2005
    Inventors: Jay Short, Eric Mathur, David Lam
  • Publication number: 20050100985
    Abstract: Disclosed is a rapid and facilitated method of producing from a parentlal template polynucleotide, a set of mutagenized progeny polynculeotides whereby at each original codon position there is produced at least one substitute codon encoding each of the 20 naturally encoded amino acids. Accordingly, there is also provided a method of producing from a parental template polypeptide, a set of mutagenized progeny polypeptides wherein each of the 20 naturally encoded amino acids is represented at each original amino acid position. The method provided is termed site-saturation mutagenesis, or simply saturation mutagenesis, and can be used in combination with other mutagenization processes, such as, for example, a process wherein two or more related polynucleotides are introduced into a suitable host cell such that a hybrid polynucleotide is generated by recombination and reductive reassortment.
    Type: Application
    Filed: August 20, 2003
    Publication date: May 12, 2005
    Inventor: Jay Short
  • Publication number: 20050069917
    Abstract: Disclosed is a process for identifying clones having a specified activity of interest, which process comprises (i) generating one or more expression libraries derived from nuclei acid directly isolated from the environment; and (ii) screening said libraries utilizing a fluorescence activated cell sorter to identify said clones. More particularly, this is a process for identifying clones having a specified activity of interest by (i) generating one or more expression libraries derived from nucleic acid directly or indirectly isolated from the environment; (ii) exposing said libraries to a particular substrate or substrates of interest; and (iii) screening said exposed libraries utilizing a fluorescence activated cell sorter to identify clones which react with the substrate or substrates.
    Type: Application
    Filed: May 10, 2004
    Publication date: March 31, 2005
    Inventors: Jay Short, Martin Keller
  • Publication number: 20050064498
    Abstract: Provided is a method of screening or enriching a sample containing polynucleotides from a mixed population of organisms. The method includes creating a DNA library from a plurality of nucleic acid sequences of a mixed population of organisms and separating clones containing a polynucleotide sequence of interest on a fluorescence analyzer based upon hybridization of a fluorescence labeled oligonucleotide probe to a target sequence in a clone. The separated or enrich library can then be further process by activity based screening or sequence based screening. In addition, the enriched sequence can be compared to a database and to identify sequences in the database which have homology to a clone in the library thereby obtaining a nucleic acid profile of the mixed population of organisms.
    Type: Application
    Filed: October 7, 2004
    Publication date: March 24, 2005
    Inventors: Jay Short, Martin Keller
  • Publication number: 20050040550
    Abstract: Disclosed is a process for identifying clones having a specified activity of interest, which process comprises (i) generating one or more expression libraries derived from nuclei acid directly isolated from the environment; and (ii) screening said libraries utilizing a fluorescence activated cell sorter to identify said clones. More particularly, this is a process for identifying clones having a specified activity of interest by (i) generating one or more expression libraries derived from nucleic acid directly or indirectly isolated from the environment; (ii) exposing said libraries to a particular substrate or substrates of interest; and (iii) screening said exposed libraries utilizing a fluorescence activated cell sorter to identify clones which react with the substrate or substrates.
    Type: Application
    Filed: September 23, 2004
    Publication date: February 24, 2005
    Applicant: Diversa Corporation
    Inventors: Jay Short, Martin Keller
  • Publication number: 20050032054
    Abstract: Disclosed is a process for identifying clones having a specified activity of interest, which process comprises (i) generating one or more expression libraries derived from nucleic acid directly isolated from the environment; and (ii) screening said libraries utilizing an assay system. More particularly, this is a process for identifying clones having a specified activity of interest by (i) generating one or more expression libraries derived from nucleic acid directly or indirectly isolated from the environment; (ii) exposing said libraries to a particular substrate or substrates of interest; and (iii) screening said exposed libraries utilizing a fluorescence activated cell sorter to identify clones which react with the substrate or substrates.
    Type: Application
    Filed: April 25, 2003
    Publication date: February 10, 2005
    Inventor: Jay Short
  • Publication number: 20050009080
    Abstract: Disclosed is a process for obtaining an enzyme having a specified enzyme activity derived from a heterogeneous DNA population by screening, for the specified enzyme activity, a library of clones containing DNA from the heterogeneous DNA population which have been exposed to directed mutagenesis towards production of the specified enzyme activity. Also disclosed is a process for obtaining an enzyme having a specified enzyme activity by screening, for the specified enzyme activity, a library of clones containing DNA from a pool of DNA populations which have been exposed to directed mutagenesis in an attempt to produce in the library of clones DNA encoding an enzyme having one or more desired characteristics which can be the same or different from the specified enzyme activity.
    Type: Application
    Filed: August 4, 2004
    Publication date: January 13, 2005
    Inventor: Jay Short
  • Publication number: 20030215798
    Abstract: Disclosed is a process for identifying clones having a specified activity of interest, which process comprises (i) generating one or more expression libraries derived from nuclei acid directly isolated from the environment; and (ii) screening said libraries utilizing a fluorescence activated cell sorter to identify said clones. More particularly, this is a process for identifying clones having a specified activity of interest by (i) generating one or more expression libraries derived from nucleic acid directly or indirectly isolated from the environment; (ii) exposing said libraries to a particular substrate or substrates of interest; and (iii) screening said exposed libraries utilizing a fluorescence activated cell sorter to identify clones which react with the substrate or substrates.
    Type: Application
    Filed: June 16, 1997
    Publication date: November 20, 2003
    Applicant: DIVERSA CORPORATION
    Inventors: JAY SHORT, MARTIN KELLER
  • Publication number: 20030198681
    Abstract: A polymer is prepared by self-assembly of a plurality of monomeric polypeptide units. The polymer tends to form a nanotube and is capable of encapsulating a particular drug molecule. Once encapsulated in the polymer of the present invention, the drug molecule may be delivered to a particular location of human body to effectively cure a disease or treat a symptom.
    Type: Application
    Filed: November 30, 2001
    Publication date: October 23, 2003
    Inventors: Jay Short, Eric J. Mathur, W. Michael Lafferty, Nelson Barton, Kevin Chow
  • Publication number: 20020184865
    Abstract: A walk behind gang mower includes a frame with a plurality of reel-type mowers attached to the frame. The user, along with motors and propulsion wheels, propel the walk behind gang mower forward and rotate the cutting reel. The rear rollers of the reel-type mower unit support the majority of the frame's weight such that the motor indirectly operates the cutting reel by rotation of the propulsion wheel. Movement of the mower rotates the forward drive wheels of the reel type mower(s), which in turn, rotate the cutting reel(s). The user uses a steering controller to adjust the power delivered to the propulsion wheels so that the walk behind gang mower can be easily turned.
    Type: Application
    Filed: June 24, 2002
    Publication date: December 12, 2002
    Inventor: Douglas Jay Short
  • Patent number: 6481191
    Abstract: A gang mower and tractor assembly includes a tractor with a forward section attached to a rear section by a pivot. A frame is attached to the forward section. A plurality of reel type mowers are attached to the frame.
    Type: Grant
    Filed: January 18, 2000
    Date of Patent: November 19, 2002
    Inventor: Douglas Jay Short
  • Publication number: 20020137185
    Abstract: The invention relates to amidases and to polynucleotides encoding the amidases. In addition methods of designing new amidases and method of use thereof are also provided. The amidases have increased activity and stability at increased pH and temperature.
    Type: Application
    Filed: September 27, 2001
    Publication date: September 26, 2002
    Inventors: Jay Short, Eric Mathur, Dennis Murphy, John Reid, Dan Robertson
  • Publication number: 20020137171
    Abstract: The invention relates to hydrolases and to polynucleotides encoding the hydrolases. In addition, the invention relates to the use of these hydrolase enzymes in kinetic resolution.
    Type: Application
    Filed: November 30, 2001
    Publication date: September 26, 2002
    Applicant: Diversa Corporation
    Inventors: Jay Short, Eric J. Mathur, Markus Baumann, Uwe T. Bornscheuer
  • Publication number: 20020132243
    Abstract: The invention relates to thermostable polymerases that have polymerase activity temperatures in the range from 90° C. up to 113° C., such as those derived from Pyrolobus fumaria, and to polynucleotides encoding the polymerases In addition, methods of designing new thermostable DNA polymerases and methods of use thereof are also provided. The polymerases have increased activity and stability at increased pH and temperature.
    Type: Application
    Filed: September 6, 2001
    Publication date: September 19, 2002
    Inventors: Walter Callen, Eric J. Mathur, Jay Short
  • Patent number: 5075229
    Abstract: A transgenic animal is constructed in which one or more cells contain a promoter to the gene for cytosolic PEPCK operably linked to a non-PEPCK gene of interest. Expression of this gene is controlled by modifying the protein and carbohydrate components of the animal's diet, or by direct hormonal regulation. The PEPCK promoter is induced by high protein and inhibited by high carbohydrate, or more directly by cAMP and insulin. The linked gene is expressed essentially only after bith and essentially only in particular tissues. The PEPCK promoter has a extremely high promoter strength.
    Type: Grant
    Filed: June 13, 1988
    Date of Patent: December 24, 1991
    Assignee: Ohio University Edison Animal Biotechnology Center
    Inventors: Richard W. Hanson, Mary McGrane, Jay Short, Maria Hatzoglou