Patents by Inventor Jeffrey Fox

Jeffrey Fox has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20240294886
    Abstract: Mutant polymerases are provided that have improved ability to incorporate modified nucleotides, including 3?—OH unblocked reversible terminators. The mutant polymerases may be used in a variety of applications, such as for polynucleotide sequencing, primer extension reactions, and template-independent enzymatic oligonucleotide synthesis.
    Type: Application
    Filed: May 1, 2024
    Publication date: September 5, 2024
    Inventors: Michelle Cayouette, Jeffrey Fox, Connie Hansen, Holly Hogrefe, Weidong Wu
  • Patent number: 12006519
    Abstract: Mutant polymerases are provided that have improved ability to incorporate modified nucleotides, including 3?-OH unblocked reversible terminators. The mutant polymerases may be used in a variety of applications, such as for polynucleotide sequencing, primer extension reactions, and template-independent enzymatic oligonucleotide synthesis.
    Type: Grant
    Filed: September 11, 2023
    Date of Patent: June 11, 2024
    Assignee: Agilent Technologies, Inc.
    Inventors: Michelle Cayouette, Jeffrey Fox, Connie Hansen, Holly Hogrefe, Weidong Wu
  • Publication number: 20240018490
    Abstract: Mutant polymerases are provided that have improved ability to incorporate modified nucleotides, including 3?-OH unblocked reversible terminators. The mutant polymerases may be used in a variety of applications, such as for polynucleotide sequencing, primer extension reactions, and template-independent enzymatic oligonucleotide synthesis.
    Type: Application
    Filed: September 11, 2023
    Publication date: January 18, 2024
    Inventors: Michelle Cayouette, Jeffrey Fox, Connie Hansen, Holly Hogrefe, Weidong Wu
  • Patent number: 11773380
    Abstract: Mutant polymerases are provided that have improved ability to incorporate modified nucleotides, including 3?-OH unblocked reversible terminators. The mutant polymerases may be used in a variety of applications, such as for polynucleotide sequencing, primer extension reactions, and template-independent enzymatic oligonucleotide synthesis.
    Type: Grant
    Filed: August 24, 2022
    Date of Patent: October 3, 2023
    Assignee: Agilent Technologies, Inc.
    Inventors: Michelle Cayouette, Jeffrey Fox, Connie Hansen, Holly Hogrefe, Weidong Wu
  • Patent number: 11457892
    Abstract: An ultrasound transducer positioning apparatus and method that are capable of securing an ultrasound transducer in a desired position on a patient's body are disclosed. In some implementations, pressure exerted by the apparatus on the ultrasound transducer influences the angle at which the ultrasound energy is delivered to the patient's body.
    Type: Grant
    Filed: September 24, 2020
    Date of Patent: October 4, 2022
    Inventors: Anne Fox, Jeffrey Fox
  • Publication number: 20210085288
    Abstract: An ultrasound transducer positioning apparatus and method that are capable of securing an ultrasound transducer in a desired position on a patient's body are disclosed. In some implementations, pressure exerted by the apparatus on the ultrasound transducer influences the angle at which the ultrasound energy is delivered to the patient's body.
    Type: Application
    Filed: September 24, 2020
    Publication date: March 25, 2021
    Inventors: Anne Fox, Jeffrey Fox
  • Patent number: 9758773
    Abstract: The invention provides mutants of DNA polymerases having an enhanced resistance to inhibitors of DNA polymerase activity. The mutant polymerases are well suited for PCR amplification of targets in samples that contain inhibitors of wild-type polymerases.
    Type: Grant
    Filed: December 12, 2014
    Date of Patent: September 12, 2017
    Assignee: Agilent Technologies, Inc.
    Inventors: Nancy Mckinney, Holly H. Hogrefe, Jeffrey Fox, Connie J. Hansen, Bahram Arezi
  • Patent number: 9628095
    Abstract: Methods for designing and developing models for simulating the behavior of clock signals and in particular those generated by phase-locked loop (PLL) circuits are provided. The clock period of a phase-locked loop circuit's variable frequency oscillator signal may be modeled by combining the inverse of the oscillator frequency rounded up to the simulation time scale with the inverse rounded down to the simulation time scale. The variable frequency oscillator signal may further be synchronized with a reference clock signal at a rate determined by the relationship between the reference clock signal and the variable frequency oscillator signal. A parameter may indicate a target range for the deviation between the two signals and a runtime monitor may be used together with the parameter setting to decide whether synchronization is required and make the appropriate adjustments.
    Type: Grant
    Filed: September 5, 2012
    Date of Patent: April 18, 2017
    Assignee: Altera Corporation
    Inventors: Nikolaos Liveris, Kevin W. Mai, Jakob Jones, Yury Markovskiy, Jeffrey Fox
  • Patent number: 9523085
    Abstract: The present invention provides mutants of DNA polymerases having an increased rate of incorporation of nucleotides into nucleic acids undergoing polymerization and having an enhanced resistance to inhibitors of DNA polymerase activity. The mutant polymerases are well suited for fast PCR applications, for PCR amplification of targets in samples that contain inhibitors of wild-type polymerases, and for fast PCR amplification of samples containing DNA polymerase inhibitors. In exemplary embodiments, the mutants are mutants of Taq DNA polymerase.
    Type: Grant
    Filed: August 2, 2010
    Date of Patent: December 20, 2016
    Assignee: Agilent Technologies Inc.
    Inventors: Holly Hogrefe, Michelle Cayouette, Jeffrey Fox, Connie J. Hansen, Jennifer Lapira, Bahram Arezi, Nancy McKinney
  • Patent number: 9251300
    Abstract: A circuit designer may use computer-aided design (CAD) tools to implement an integrated circuit design. The CAD tools may include auto-pipelining capabilities to improve the performance of the integrated circuit design. Auto-pipelining may modify the number of pipeline registers in a path within a given range. A description of the integrated circuit design may include different implementation alternatives of a path each having a different number of pipeline registers, and the CAD tools may select one of these implementation alternatives. The CAD tools may further evaluate the performance of a particular implementation alternative and iteratively select a different implementation alternative until a given objective is met. The CAD tool may update a test environment according to the selected implementation alternative once the objective is met and validate the selected implementation alternative using the updated test environment.
    Type: Grant
    Filed: October 25, 2013
    Date of Patent: February 2, 2016
    Assignee: Altera Corporation
    Inventors: Michael D. Hutton, Chuck Rumbolt, Jeffrey Fox, Herman Henry Schmidt
  • Publication number: 20150232821
    Abstract: The invention provides mutants of DNA polymerases having an enhanced resistance to inhibitors of DNA polymerase activity. The mutant polymerases are well suited for PCR amplification of targets in samples that contain inhibitors of wild-type polymerases.
    Type: Application
    Filed: December 12, 2014
    Publication date: August 20, 2015
    Applicant: AGILENT TECHNOLOGIES, INC.
    Inventors: Nancy Mckinney, Holly H. Hogrefe, Jeffrey Fox, Connie J. Hansen, Bahram Arezi
  • Publication number: 20150121319
    Abstract: A circuit designer may use computer-aided design (CAD) tools to implement an integrated circuit design. The CAD tools may include auto-pipelining capabilities to improve the performance of the integrated circuit design. Auto-pipelining may modify the number of pipeline registers in a path within a given range. A description of the integrated circuit design may include different implementation alternatives of a path each having a different number of pipeline registers, and the CAD tools may select one of these implementation alternatives. The CAD tools may further evaluate the performance of a particular implementation alternative and iteratively select a different implementation alternative until a given objective is met. The CAD tool may update a test environment according to the selected implementation alternative once the objective is met and validate the selected implementation alternative using the updated test environment.
    Type: Application
    Filed: October 25, 2013
    Publication date: April 30, 2015
    Applicant: Altera Corporation
    Inventors: Michael D. Hutton, Chuck Rumbolt, Jeffrey Fox, Herman Henry Schmidt
  • Publication number: 20110027833
    Abstract: The present invention provides mutants of DNA polymerases having an increased rate of incorporation of nucleotides into nucleic acids undergoing polymerization and having an enhanced resistance to inhibitors of DNA polymerase activity. The mutant polymerases are well suited for fast PCR applications, for PCR amplification of targets in samples that contain inhibitors of wild-type polymerases, and for fast PCR amplification of samples containing DNA polymerase inhibitors. In exemplary embodiments, the mutants are mutants of Taq DNA polymerase.
    Type: Application
    Filed: August 2, 2010
    Publication date: February 3, 2011
    Inventors: Holly Hogrefe, Michelle Cayouette, Jeffrey Fox, Connie J. Hansen, Jennifer Lapira, Bahram Arezi, Nancy McKinney
  • Publication number: 20080064071
    Abstract: The present invention provides methods, compositions, and kits for storing and enhancing the activity of thermostable polymerases. The methods comprise mixing a thermostable polymerase with at least one zwitterionic detergent or non-detergent surfactant. Compositions and kits for performing the process according to the invention are also provided.
    Type: Application
    Filed: July 25, 2007
    Publication date: March 13, 2008
    Inventors: Holly Hogrefe, Jeffrey Fox, Michael Borns, Jeffrey Braman
  • Publication number: 20070250682
    Abstract: A computer array (10) has a plurality of computers (12) for accomplishing a larger task that is divided into smaller tasks, each of the smaller tasks being assigned to one or more of the computers (12). Each of the computers (12) may be configured for specific functions and individual input/output circuits (26) associated with exterior computers (12) are specifically adapted for particular input/output functions. An example of 24 computers (12) arranged in the computer array (10) has a centralized computational core (34) with the computers (12) nearer the edge of the die (14) being configured for input and/or output. Mechanisms are described for communications between computers (12) and the outside environment.
    Type: Application
    Filed: March 30, 2007
    Publication date: October 25, 2007
    Inventors: Charles Moore, John Rible, Jeffrey Fox
  • Publication number: 20070249948
    Abstract: The present invention relates to evaluating the effect of physiological conditions on the occurrence of ventricular fibrillation, identifying strategies for treatment or prevention of ventricular fibrillation or ventricular tachycardia, and evaluating a subject for induction of ventricular fibrillation from a condition of ventricular tachycardia.
    Type: Application
    Filed: February 2, 2005
    Publication date: October 25, 2007
    Inventors: Robert Gilmour, Jeffrey Fox, Mark Riccio
  • Publication number: 20070226457
    Abstract: A microprocessor system in which an array of processors communicates more efficiently through the use of a worker mode function. Processors that are not currently executing code remain in an inactive but alert state until a task is sent to them by an adjacent processor. Processors can also be programmed to temporarily suspend a task to check for incoming tasks or messages.
    Type: Application
    Filed: January 12, 2007
    Publication date: September 27, 2007
    Inventors: Charles Moore, Jeffrey Fox, John Rible
  • Publication number: 20070192566
    Abstract: A computer array (10) has a plurality of computers (12). The computers (12) communicate with each other asynchronously, and the computers (12) themselves operate in a generally asynchronous manner internally. When one computer (12) attempts to communicate with another it goes to sleep until the other computer (12) is ready to complete the transaction, thereby saving power and reducing heat production. The sleeping computer (12) can be awaiting data or instructions (12). In the case of instructions, the sleeping computer (12) can be waiting to store the instructions or to immediately execute the instructions. In the later case, the instructions are placed in an instruction register (30a) when they are received and executed therefrom, without first placing the instructions first into memory. The instructions can include a micro-loop (100) which is capable of performing a series of operations repeatedly.
    Type: Application
    Filed: May 26, 2006
    Publication date: August 16, 2007
    Inventors: Charles Moore, Jeffrey Fox, John Rible
  • Publication number: 20070192575
    Abstract: A computer array (10) has a plurality of computers (12). The computers (12) communicate with each other asynchronously, and the computers (12) themselves operate in a generally asynchronous manner internally. When one computer (12) attempts to communicate with another it goes to sleep until the other computer (12) is ready to complete the transaction, thereby saving power and reducing heat production. The sleeping computer (12) can be awaiting data or instructions (12). In the case of instructions, the sleeping computer (12) can be waiting to store the instructions or to immediately execute the instructions. In the later case, the instructions are placed in an instruction register (30a) when they are received and executed therefrom, without first placing the instructions first into memory. The instructions can include a micro-loop (100) which is capable of performing a series of operations repeatedly.
    Type: Application
    Filed: May 26, 2006
    Publication date: August 16, 2007
    Inventors: Charles Moore, Jeffrey Fox, John Rible
  • Patent number: D988203
    Type: Grant
    Filed: September 3, 2020
    Date of Patent: June 6, 2023
    Assignees: AMATRIMARA INC., BENTECH INC.
    Inventors: Scott Strong, Arash Jenab, Robert Benninghoff, Jeffrey Fox