Abstract: The method comprises: the reverse transcription of the template RNA, the amplification and high-throughput sequencing of the cDNAs obtained in this way, the mapping of the sequenced cDNAs/reads to the reference genome using computerized alignment methods, a computerized evaluation of the mapping results with regard to the reverse transcription event pattern (the RT signature) at the nucleotide positions and feeding the digitalised data of the RT signatures into a computerized machine learning based classification system. Reverse transcription is carried out in parallel reaction batches with different reverse transcriptases and/or under different reaction conditions. The evaluation of the mapping results with regard to the RT signature is carried out using the events ‘arrest’ and/or ‘readthrough with mismatch’ and/or ‘readthrough with sequence gap(s)’. RT signature data obtained using the parallel reaction batches are fed into the classification system.