Patents by Inventor Jennifer SHOCK

Jennifer SHOCK has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230187027
    Abstract: The present disclosure provides methods and systems for identifying natural product-encoding multi-gene clusters (MGCs). In some embodiments, the present disclosure also teaches methods for producing sequenced and assembled metagenomic libraries that are amenable to MGC search bionformatic tools and techniques.
    Type: Application
    Filed: September 23, 2022
    Publication date: June 15, 2023
    Inventors: Oliver LIU, Eyal AKIVA, Tom Hayon EYLES, Ute GALM, Sangita GANESH, Stephanie Leanne Brown HENDRIX, William W. HWANG, Jeffrey Hoon KIM, Alexander NECKELMANN, Samuel OTENG-PABI, Claus PELIKAN, Devin SCANNELL, Zachariah SERBER, Jennifer SHOCK, Michael W. SNEDDON, Xiao YANG
  • Patent number: 11495326
    Abstract: The present disclosure provides methods and systems for identifying natural product-encoding multi-gene clusters (MGCs). In some embodiments, the present disclosure also teaches methods for producing sequenced and assembled metagenomic libraries that are amenable to MGC search bioinformatic tools and techniques.
    Type: Grant
    Filed: September 21, 2021
    Date of Patent: November 8, 2022
    Assignee: Zymergen Inc.
    Inventors: Oliver Liu, Eyal Akiva, Tom Hayon Eyles, Ute Galm, Sangita Ganesh, Stephanie Leanne Brown Hendrix, William W. Hwang, Jeffrey Hoon Kim, Alexander Neckelmann, Samuel Oteng-Pabi, Claus Pelikan, Devin Scannell, Zachariah Serber, Jennifer Shock, Michael W. Sneddon, Xiao Yang
  • Publication number: 20220005550
    Abstract: The present disclosure provides methods and systems for identifying natural product-encoding multi-gene clusters (MGCs). In some embodiments, the present disclosure also teaches methods for producing sequenced and assembled metagenomic libraries that are amenable to MGC search bionformatic tools and techniques.
    Type: Application
    Filed: September 21, 2021
    Publication date: January 6, 2022
    Inventors: Oliver LIU, Eyal AKIVA, Tom Hayon EYLES, Ute GALM, Sangita GANESH, Stephanie Leanne Brown HENDRIX, William W. HWANG, Jeffrey Hoon KIM, Alexander NECKELMANN, Samuel OTENG-PABI, Claus PELIKAN, Devin SCANNELL, Zachariah SERBER, Jennifer SHOCK, Michael W. SNEDDON, Xiao YANG
  • Patent number: 11189362
    Abstract: The present disclosure provides methods and systems for identifying natural product-encoding multi-gene clusters (MGCs). In some embodiments, the present disclosure also teaches methods for producing sequenced and assembled metagenomic libraries that are amenable to MGC search bionformatic tools and techniques.
    Type: Grant
    Filed: February 16, 2021
    Date of Patent: November 30, 2021
    Assignee: Zymergen Inc.
    Inventors: Oliver Liu, Eyal Akiva, Tom Hayon Eyles, Ute Galm, Sangita Ganesh, Stephanie Leanne Brown Hendrix, William W. Hwang, Jeffrey Hoon Kim, Alexander Neckelmann, Samuel Oteng-Pabi, Claus Pelikan, Devin Scannell, Zachariah Serber, Jennifer Shock, Michael Sneddon, Xiao Yang
  • Publication number: 20210277390
    Abstract: The disclosure is directed to an approach for discovering novel insecticidal proteins from highly heterogeneous environmental sources. The methodology utilizes metagenomic enrichment procedures that increase the representation of specific genera of bacteria, prior to deep sequencing, in order to access novel variants of insecticidal proteins. In aspects, the taught methods are useful for creating large genomic libraries enriched for Bacillus sp. The enriched genomic libraries are useful for the discovery of novel cry toxin genes, which enable the identification of novel Cry proteins.
    Type: Application
    Filed: May 17, 2021
    Publication date: September 9, 2021
    Inventors: Jeffrey KIM, Oliver LIU, Jennifer SHOCK, Maritza DUARTE
  • Publication number: 20210257056
    Abstract: The present disclosure provides methods and systems for identifying natural product-encoding multi-gene clusters (MGCs). In some embodiments, the present disclosure also teaches methods for producing sequenced and assembled metagenomic libraries that are amenable to MGC search bionformatic tools and techniques.
    Type: Application
    Filed: February 16, 2021
    Publication date: August 19, 2021
    Inventors: Oliver LIU, Eyal AKIVA, Tom Hayon EYLES, Ute GALM, Sangita GANESH, Stephanie Leanne Brown HENDRIX, William W. HWANG, Jeffrey Hoon KIM, Alexander NECKELMANN, Samuel OTENG-PABI, Claus PELIKAN, Devin SCANNELL, Zachariah SERBER, Jennifer SHOCK, Michael SNEDDON, Xiao YANG
  • Patent number: 11046974
    Abstract: The disclosure presents a platform for discovering novel insecticidal proteins from highly heterogeneous environmental sources. The methodology utilizes metagenomic enrichment procedures and unique genetic amplification techniques, which enables access to a broad class of unknown microbial diversity and their resultant proteome. The disclosed insecticidal protein discovery platform (IPDP) can be computationally driven and is able to integrate molecular biology, automation, and advanced machine learning protocols. The platform will enable researchers to rapidly and accurately access the vast repertoire of untapped insecticidal proteins produced by uncharacterized and complex microbial environmental samples. Also presented herein are a group of newly discovered pore-forming toxins (PFT) from a rare class of insecticidal proteins, which were discovered utilizing the insecticidal protein discovery platform.
    Type: Grant
    Filed: September 1, 2020
    Date of Patent: June 29, 2021
    Assignee: Zymergen Inc.
    Inventors: William W. Hwang, Jeffrey Kim, Oliver Liu, Jennifer Shock
  • Patent number: 11008569
    Abstract: The disclosure is directed to an approach for discovering novel insecticidal proteins from highly heterogeneous environmental sources. The methodology utilizes metagenomic enrichment procedures that increase the representation of specific genera of bacteria, prior to deep sequencing, in order to access novel variants of insecticidal proteins. In aspects, the taught methods are useful for creating large genomic libraries enriched for Bacillus sp. The enriched genomic libraries are useful for the discovery of novel cry toxin genes, which enable the identification of novel Cry proteins.
    Type: Grant
    Filed: August 20, 2020
    Date of Patent: May 18, 2021
    Assignee: Zymergen Inc.
    Inventors: Jeffrey Kim, Oliver Liu, Jennifer Shock, Maritza Duarte
  • Publication number: 20210015109
    Abstract: The disclosure presents a platform for discovering novel insecticidal proteins from highly heterogeneous environmental sources. The methodology utilizes metagenomic enrichment procedures and unique genetic amplification techniques, which enables access to abroad class of unknown microbial diversity and their resultant proteome. The disclosed insecticidal protein discovery platform (IPDP) can be computationally driven and is able to integrate molecular biology, automation, and advanced machine learning protocols. The platform will enable researchers to rapidly and accurately access the vast repertoire of untapped insecticidal proteins produced by uncharacterized and complex microbial environmental samples. Also presented herein are a group of newly discovered pore-forming toxins (PFT) from a rare class of insecticidal proteins, which were discovered utilizing the insecticidal protein discovery platform.
    Type: Application
    Filed: March 1, 2019
    Publication date: January 21, 2021
    Inventors: William W. HWANG, Jeffrey KIM, Oliver LIU, Jennifer SHOCK
  • Publication number: 20200399654
    Abstract: The disclosure presents a platform for discovering novel insecticidal proteins from highly heterogeneous environmental sources. The methodology utilizes metagenomic enrichment procedures and unique genetic amplification techniques, which enables access to a broad class of unknown microbial diversity and their resultant proteome. The disclosed insecticidal protein discovery platform (IPDP) can be computationally driven and is able to integrate molecular biology, automation, and advanced machine learning protocols. The platform will enable researchers to rapidly and accurately access the vast repertoire of untapped insecticidal proteins produced by uncharacterized and complex microbial environmental samples. Also presented herein are a group of newly discovered pore-forming toxins (PFT) from a rare class of insecticidal proteins, which were discovered utilizing the insecticidal protein discovery platform.
    Type: Application
    Filed: September 1, 2020
    Publication date: December 24, 2020
    Inventors: William W. HWANG, Jeffrey Kim, Oliver Liu, Jennifer Shock
  • Publication number: 20200385711
    Abstract: The disclosure is directed to an approach for discovering novel insecticidal proteins from highly heterogeneous environmental sources. The methodology utilizes metagenomic enrichment procedures that increase the representation of specific genera of bacteria, prior to deep sequencing, in order to access novel variants of insecticidal proteins. In aspects, the taught methods are useful for creating large genomic libraries enriched for Bacillus sp. The enriched genomic libraries are useful for the discovery of novel cry toxin genes, which enable the identification of novel Cry proteins.
    Type: Application
    Filed: August 20, 2020
    Publication date: December 10, 2020
    Inventors: Jeffrey KIM, Oliver LIU, Jennifer SHOCK, Maritza DUARTE