Patents by Inventor Jeremy S. Caldwell

Jeremy S. Caldwell has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 8163153
    Abstract: A gel extraction device (10) comprises a hollow cutting member (12) having cutting edge (14) at one end and a squeeze bulb (16) at the other end. In a further embodiment, the air passage between the cutting edge and the bulb has a constriction zone (20) to prevent any extracted gel from being drawn too deeply into the extractor, in another embodiment, a blow-hole in the hollow cutting member or in the squeeze bulb provides for the passage of air displaced by gel through the extractor. The blow-hole may be covered to secure the gel in the receptacle for transfer from the matrix to a sample container.
    Type: Grant
    Filed: December 20, 2005
    Date of Patent: April 24, 2012
    Inventors: Jeremy S. Caldwell, Dale R. Caldwell, Leon C. Clouser, Jr.
  • Publication number: 20090286326
    Abstract: A gel extraction device (10) comprises a hollow cutting member (12) having cutting edge (14) at one end and a squeeze bulb (16) at the other end. In a further embodiment, the air passage between the cutting edge and the bulb has a constriction zone (20) to prevent any extracted gel from being drawn too deeply into the extractor, in another embodiment, a blow-hole in the hollow cutting member or in the squeeze bulb provides for the passage of air displaced by gel through the extractor. The blow-hole may be covered to secure the gel in the receptacle for transfer from the matrix to a sample container.
    Type: Application
    Filed: December 20, 2005
    Publication date: November 19, 2009
    Inventors: Jeremy S. Caldwell, Dale R. Caldwell, Leon C. Clouser, JR.
  • Patent number: 7604977
    Abstract: This invention provides novel methods for identifying agents that inhibit HIV infection. The anti-HIV agents are identified by screening test compounds for ability to modulate a biological activity of isopeptidase T (IsoT), e.g., its isopeptidase activity or its binding to another molecule such as viral protein R (Vpr). Such IsoT modulators can be further examined for their activity in inhibiting an activity indicative of HIV infection or HIV replication. These novel anti-HIV agents are useful in the prevention or treatment of HIV infection and conditions associated with or caused by HIV infection.
    Type: Grant
    Filed: April 21, 2006
    Date of Patent: October 20, 2009
    Assignee: IRM LLC
    Inventors: Kelli L. Kuhen, Jeremy S. Caldwell
  • Publication number: 20090252757
    Abstract: This invention provides novel HIV-interacting host factors. The invention also provides methods of using the HIV-interacting host factors to screen for compounds that inhibit HIV infection. The methods comprise first screening test compounds for modulators of an HIV interacting host factor disclosed herein, and then further screening the identified modulating compounds for ability to inhibit HIV infection. The invention further provides methods and pharmaceutical compositions for treating diseases and conditions associated with HIV infection.
    Type: Application
    Filed: December 8, 2006
    Publication date: October 8, 2009
    Applicant: IRM LLC
    Inventors: Deborah Nguyen, Kelli L. Kuhen, Jeremy S. Caldwell
  • Publication number: 20080253927
    Abstract: The present invention provides a system and method for high throughput processing using sample holders. The system has a plurality of work perimeters, with a rotational robot preferably associated with each work perimeter. At least one transfer station area is provided between adjacent work perimeters to facilitate robotic transfer of sample holders from one work perimeter to another area. Each work perimeter typically includes a plurality of defined station locations, with each station location positioned to be accessible by the robot associated with that area. In addition, each station location is typically configured to receive a device, such as an automated instrument or a holding nest. Device components are arranged at selected station locations according to specific application requirements to provide a flexible, robust, reliable, and accurate high throughput processing system.
    Type: Application
    Filed: June 23, 2008
    Publication date: October 16, 2008
    Applicant: IRM LLC
    Inventors: Kristina Marie Burow, Jeremy S. Caldwell, Robert Charles Downs, Scott Allan Lesley, James Kevin Mainquist, Andrew J. Meyer, Daniel G. Sipes, Mark Richard Weselak
  • Patent number: 7390458
    Abstract: Briefly, the present invention provides a system and method for high throughput processing using sample holders. The system has a plurality of work perimeters, with a rotational robot preferably associated with each work perimeter. At least one transfer station area is provided between adjacent work perimeters to facilitate robotic transfer of sample holders from one work perimeter to another area. Each work perimeter typically includes a plurality of defined station locations, with each station location positioned to be accessible by the robot associated with that area. In addition, each station location is typically configured to receive a device, such as an automated instrument or a holding nest. Device components are arranged at selected station locations according to specific application requirements to provide a flexible, robust, reliable, and accurate high throughput processing system.
    Type: Grant
    Filed: October 15, 2001
    Date of Patent: June 24, 2008
    Assignee: IRM LLC
    Inventors: Kristina Marie Burow, Jeremy S. Caldwell, Robert Charles Downs, Scott Allan Lesley, James Kevin Mainquist, Andrew J. Meyer, Daniel G. Sipes, Mark Richard Weselak
  • Patent number: 7364842
    Abstract: This invention relates to the discovery that the transcription factors Pbx1 and HMG I are involved in retrovirus, e.g., HIV, replication. Thus, the invention provides methods of identifying modulators of these proteins. Such modulators can be used as reagents in in vitro assays to modulate expression of retroviral sequences and may be used to inhibit HIV replication in vivo.
    Type: Grant
    Filed: May 18, 2004
    Date of Patent: April 29, 2008
    Assignee: IRM, LLC
    Inventors: Sheng Hao Chao, Jeremy S. Caldwell
  • Patent number: 7344833
    Abstract: This invention provides novel AP-1 modulatory polypeptides. The invention also provides methods for screening modulators of AP-1 transcription factor activities. The methods comprise first screening test agents for modulators of an AP-1-modulatory polypeptide and then further screening the identified modulating agents for modulators of AP-1 transcription factor activities. The invention further provides methods and pharmaceutical compositions for modulating AP-1 transcription factor activities in a cell and for treating diseases and conditions mediated by abnormal cellular proliferation.
    Type: Grant
    Filed: November 5, 2003
    Date of Patent: March 18, 2008
    Assignee: IRM LLC
    Inventors: Sumit Chanda, Suhaila White, John B. Hogenesch, Jeremy S. Caldwell
  • Patent number: 7179619
    Abstract: This invention provides methods of screening for compounds that inhibit herpesviral transcription and replication. The methods comprise screening test compounds for ability to enhance the activity of homeodomain transcription factor PDX1 in repressing transcription of herpesviral genes (e.g., the IE gene of cytomegalovirus). Transcriptional repression by PDX1 can be monitored using an expression vector comprising a reporter gene operably linked to a PDX1-binding, upstream transcription regulatory sequence of the herpesvirus. The invention further provides methods and pharmaceutical compositions for stimulating PDX1-mediated transcriptional repression in a subject and for treating diseases and conditions associated with herpesviral infection.
    Type: Grant
    Filed: July 7, 2004
    Date of Patent: February 20, 2007
    Assignee: IRM LLC
    Inventors: Sheng-Hao Chao, Jeremy S. Caldwell
  • Publication number: 20040171035
    Abstract: This invention provides novel p53 modulatory polypeptides. The invention also provides methods for screening modulators of p53. The methods comprise first screening test agents for modulators of a p53-modulatory polypeptide and then further screening the identified modulating agents for modulators of p53. The invention further provides methods and pharmaceutical compositions for modulating p53 bioactivities in a cell and for treating diseases and conditions mediated by abnormal cellular proliferation.
    Type: Application
    Filed: November 7, 2003
    Publication date: September 2, 2004
    Applicants: IRM LLC, The Scripps Research Institute
    Inventors: Qihong Huang, Sumit Chanda, John B. Hogenesch, Jeremy S. Caldwell
  • Publication number: 20040146903
    Abstract: This invention provides novel AP-1 modulatory polypeptides. The invention also provides methods for screening modulators of AP-1 transcription factor activities. The methods comprise first screening test agents for modulators of an AP-1-modulatory polypeptide and then further screening the identified modulating agents for modulators of AP-1 transcription factor activities. The invention further provides methods and pharmaceutical compositions for modulating AP-1 transcription factor activities in a cell and for treating diseases and conditions mediated by abnormal cellular proliferation.
    Type: Application
    Filed: November 5, 2003
    Publication date: July 29, 2004
    Applicant: IRM LLC, a Delaware Limited Liability Company
    Inventors: Sumit Chanda, Suhaila White, John B. Hogenesch, Jeremy S. Caldwell
  • Publication number: 20040076954
    Abstract: Methods for identifying responder genes and regulatory regions that confer responsiveness to a test substance or other perturbation are provided. Regulatory regions identified by such methods or other methods are cloned into expression constructs to control expression of a nucleic acid molecule that encodes, for example, a selectable marker or reporter, and introduced into cells. The resulting cells are used, for example, in high throughput screening assays for profiling substances and conditions and for studying the function of the regulatory region mediating the response. Addressable collections of the cells are also provided.
    Type: Application
    Filed: March 12, 2002
    Publication date: April 22, 2004
    Applicant: IRM, LLC
    Inventors: Jeremy S. Caldwell, John B. Hogenesch, Andrew I. Su
  • Publication number: 20030170642
    Abstract: A genetic screening methodology for rapid identification of candidate targets of any small molecule cellular effectors and other signals and modulators of cellular functions and pathways is provided. The effect of a small molecule or other signal on a cell is titrated by expressing within the cell cDNA that encodes a polypeptide that is the molecular target or that is responsible for directly or indirectly producing the molecular target.
    Type: Application
    Filed: March 12, 2002
    Publication date: September 11, 2003
    Applicant: IRM, LLC
    Inventors: Jeremy S. Caldwell, Sumit K. Chanda, Nikunj V. Somia, John B. Hogenesch, Michael P. Cooke, Pedro Aza-Blanc
  • Publication number: 20020090320
    Abstract: Briefly, the present invention provides a system and method for high throughput processing using sample holders. The system has a plurality of work perimeters, with a rotational robot preferably associated with each work perimeter. At least one transfer station area is provided between adjacent work perimeters to facilitate robotic transfer of sample holders from one work perimeter to another area. Each work perimeter typically includes a plurality of defined station locations, with each station location positioned to be accessible by the robot associated with that area. In addition, each station location is typically configured to receive a device, such as an automated instrument or a holding nest. Device components are arranged at selected station locations according to specific application requirements to provide a flexible, robust, reliable, and accurate high throughput processing system.
    Type: Application
    Filed: October 15, 2001
    Publication date: July 11, 2002
    Applicant: IRM LLC, a Delaware Limited Liability Company
    Inventors: Kristina Marie Burow, Jeremy S. Caldwell, Robert Charles Downs, Scott Allan Lesley, James Kevin Mainquist, Andrew J. Meyer, Daniel G. Sipes, Mark Richard Weselak