Patents by Inventor Joerg SIEBENMORGEN

Joerg SIEBENMORGEN has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20250076630
    Abstract: A method for generating an image of a sample includes radiating a first grid-shaped light sheet of a first wavelength range onto the sample in such a way that the sample is inhomogeneously illuminated by the first light sheet, capturing the light emitted by the sample due to the radiating of the first light sheet of the first wavelength range onto the sample; and reconstructing first areas of the sample, which are not illuminated or are more weakly illuminated using the first light sheet of the first wavelength range, on the basis of the captured light of the second areas of the sample, which are more strongly illuminated using the light sheet of the first wavelength range, by means of a machine learning system.
    Type: Application
    Filed: August 30, 2024
    Publication date: March 6, 2025
    Applicant: Carl Zeiss Microscopy GmbH
    Inventors: Manuel Amthor, Daniel Haase, Joerg Siebenmorgen
  • Patent number: 12241837
    Abstract: An apparatus and method for structured illumination microscopy, having an illumination beam path for irradiating a sample with excitation light with a two-dimensional illumination pattern at angles greater than the angle for total internal reflection. The illumination beam path has an illumination objective used to irradiate the sample. A first separation device for separating the excitation light in a first linear coordinate direction in a pupil plane and a displacement device for laterally displacing the illumination pattern in a sample plane, having a detection beam path containing at least one microscope objective for guiding emission light to a camera. The emission light is emitted by the sample as a consequence of the irradiation by the excitation light. A camera for recording images of the sample, has a control unit for calculating microscopic images of the sample using partial images of the sample recorded for different positions of the illumination pattern in the sample plane.
    Type: Grant
    Filed: February 6, 2023
    Date of Patent: March 4, 2025
    Assignee: Carl Zeiss Microscopy GmbH
    Inventors: Joerg Siebenmorgen, Ingo Kleppe, Ralf Netz
  • Publication number: 20240257313
    Abstract: Generating an overview image of an object includes, during a first capture duration, scanning regions of the object along a trajectory with illumination radiation, where the trajectory is chosen individually on the basis of properties of the object. First images of the object which together with position data (x, y, z) of an absolute distance measurement system are stored as an individual overview image are captured during the scanning of the trajectory. During a second capture duration, at least regions of the object are scanned with illumination radiation, and second images are captured; regions of the object which have already been imaged during the first capture duration are not imaged again. The first images captured during the first capture duration and the second images captured during the second capture duration are merged to form a resultant overview image of the object.
    Type: Application
    Filed: January 25, 2024
    Publication date: August 1, 2024
    Inventors: Thomas Kalkbrenner, Joerg Engel, Joerg Siebenmorgen
  • Patent number: 12007545
    Abstract: In a light sheet microscope, a detection device images a sample volume and an illumination device illuminates the sample with a light sheet. A light sheet plane is arranged substantially perpendicularly to the optical imaging axis and an illumination width extends perpendicular to the light sheet plane. A processing device is provided to control setting of the location of the light sheet plane in the sample volume, and recording a plurality of images of the sample volume with different locations of the light sheet plane. For the plurality of images recorded, a spacing, which is measured along the optical imaging axis, between adjacent locations of the light sheet plane is greater than or equal to half the illumination width, but not greater than the illumination width. Intermediate images for the stack of images in additional locations of the light sheet plane in the sample volume are computed.
    Type: Grant
    Filed: October 28, 2021
    Date of Patent: June 11, 2024
    Assignee: Carl Zeiss Microscopy GmbH
    Inventors: Ralf Netz, Joerg Siebenmorgen
  • Publication number: 20230266246
    Abstract: An apparatus and method for structured illumination microscopy, having an illumination beam path for irradiating a sample with excitation light with a two-dimensional illumination pattern at angles greater than the angle for total internal reflection. The illumination beam path has an illumination objective used to irradiate the sample. A first separation device for separating the excitation light in a first linear coordinate direction in a pupil plane and a displacement device for laterally displacing the illumination pattern in a sample plane, having a detection beam path containing at least one microscope objective for guiding emission light to a camera. The emission light is emitted by the sample as a consequence of the irradiation by the excitation light. A camera for recording images of the sample, has a control unit for calculating microscopic images of the sample using partial images of the sample recorded for different positions of the illumination pattern in the sample plane.
    Type: Application
    Filed: February 6, 2023
    Publication date: August 24, 2023
    Inventors: Joerg SIEBENMORGEN, Ingo KLEPPE, Ralf NETZ
  • Patent number: 11719922
    Abstract: A single plane illumination microscope having an illumination optical system for illuminating a sample located on a sample carrier in a medium, and which is parallel to a planar reference surface. The sample is illuminated by a light sheet via an illumination light path. A detection optical system has a detection beam path. The optical axes of the illumination and detection optical systems each define an angle that is not equal to zero degrees along with the normal to the reference surface. A barrier layer system includes at least one layer of a given material having a given thickness and separates the medium from the illumination and detection optical systems. A base area of the barrier layer system is in contact with the region that is accessible for illumination and detection activities, said base area running parallel to the reference surface.
    Type: Grant
    Filed: April 14, 2021
    Date of Patent: August 8, 2023
    Assignee: CARL ZEISS MICROSCOPY GMBH
    Inventors: Thomas Kalkbrenner, Ralf Netz, Helmut Lippert, Joerg Siebenmorgen
  • Publication number: 20230236400
    Abstract: A method, an arrangement for microscopy and a microscope for three-dimensional imaging in microscopy, in which aberrations of a specimen detection radiation coming from a specimen are corrected in a detection beam path by means of a correction element and the corrected specimen detection radiation is captured in a spatially resolved form. The inventions are distinguished by the fact that a best-possible correction setting of the correction element, with which aberrations occurring at the time are reduced as much as possible, is determined; and, on the basis of the best-possible correction setting, a flawed correction setting is determined, a setting with which aberrations occurring lead to an asymmetric point spread function of the specimen detection radiation.
    Type: Application
    Filed: January 25, 2023
    Publication date: July 27, 2023
    Inventors: Thomas Kalkbrenner, Joerg Siebenmorgen
  • Patent number: 11555991
    Abstract: A method for illuminating samples in microscopic imaging methods, wherein a number m of different wavelengths ?i, with m>I and i=I, . . . , m, is selected for the illumination. For each of the wavelengths ?i a target phase function ??i(x, y, ?i) is predefined, wherein x and y denote spatial coordinates in a plane perpendicular to an optical axis z and each target phase function ??i(x, y, ?i) is effective only for the corresponding wavelength ?i. The target phase functions ??i are predefined depending on the structure of the sample and/or the beam shape and/or illumination light structure to be impressed on the light used for illumination. A total phase mask is then produced which realises all target phase functions ??i(x, y, ?i). This total phase mask is then illuminated simultaneously or successively with coherent light of wavelengths ?i such that the predefined structure of the illumination light is generated in the region of the sample.
    Type: Grant
    Filed: May 24, 2019
    Date of Patent: January 17, 2023
    Assignee: CARL ZEISS MICROSCOPY GMBH
    Inventors: Joerg Siebenmorgen, Ralf Netz
  • Patent number: 11371927
    Abstract: A method for optically examining a plurality of microscopic samples. The samples are channeled one after the other by means of a flow into at least one flow channel in which the samples advance along a flow direction. The samples are illuminated, and light emitted from the samples is detected and analyzed. A device for carrying out the method in which samples are illuminated in that at least one light sheet with a light sheet plane is directed onto the at least one flow channel, wherein the light sheet is oriented so as to intersect the at least one flow channel in an intersection region, and the normal of the light sheet plane forms an angle differing from null together with the flow direction in the intersection region. The light emitted from the sample is registered by an imaging optical detection unit, and the focal plane of said optical detection unit lies in the intersection region.
    Type: Grant
    Filed: September 25, 2018
    Date of Patent: June 28, 2022
    Assignee: Carl Zeiss Microscopy GmbH
    Inventors: Thomas Kalkbrenner, Joerg Siebenmorgen, Thomas Ohrt
  • Publication number: 20220137382
    Abstract: In a light sheet microscope, a detection device images a sample volume and an illumination device illuminates the sample with a light sheet. A light sheet plane is arranged substantially perpendicularly to the optical imaging axis and an illumination width extends perpendicular to the light sheet plane. A processing device is provided to control setting of the location of the light sheet plane in the sample volume, and recording a plurality of images of the sample volume with different locations of the light sheet plane. For the plurality of images recorded, a spacing, which is measured along the optical imaging axis, between adjacent locations of the light sheet plane is greater than or equal to half the illumination width, but not greater than the illumination width. Intermediate images for the stack of images in additional locations of the light sheet plane in the sample volume are computed.
    Type: Application
    Filed: October 28, 2021
    Publication date: May 5, 2022
    Inventors: Ralf NETZ, Joerg SIEBENMORGEN
  • Publication number: 20210231936
    Abstract: A single plane illumination microscope having an illumination optical system for illuminating a sample located on a sample carrier in a medium, and which is parallel to a planar reference surface. The sample is illuminated by a light sheet via an illumination light path. A detection optical system has a detection beam path. The optical axes of the illumination and detection optical systems each define an angle that is not equal to zero degrees along with the normal to the reference surface. A barrier layer system includes at least one layer of a given material having a given thickness and separates the medium from the illumination and detection optical systems. A base area of the barrier layer system is in contact with the region that is accessible for illumination and detection activities, said base area running parallel to the reference surface.
    Type: Application
    Filed: April 14, 2021
    Publication date: July 29, 2021
    Applicant: Carl Zeiss Microscopy GmbH
    Inventors: Thomas Kalkbrenner, Ralf Netz, Helmut Lippert, Joerg Siebenmorgen
  • Publication number: 20210199942
    Abstract: A method for illuminating samples in microscopic imaging methods, wherein a number m of different wavelengths ?i, with m>I and i=I, . . . , m, is selected for the illumination. For each of the wavelengths ?i a target phase function ??i(x, y, ?i) is predefined, wherein x and y denote spatial coordinates in a plane perpendicular to an optical axis z and each target phase function ??i(x, y, ?i) is effective only for the corresponding wavelength ?i. The target phase functions ??i are predefined depending on the structure of the sample and/or the beam shape and/or illumination light structure to be impressed on the light used for illumination. A total phase mask is then produced which realises all target phase functions ??i(x, y, ?i). This total phase mask is then illuminated simultaneously or successively with coherent light of wavelengths ?i such that the predefined structure of the illumination light is generated in the region of the sample.
    Type: Application
    Filed: May 24, 2019
    Publication date: July 1, 2021
    Applicant: Carl Zeiss Microscopy GmbH
    Inventors: Joerg SIEBENMORGEN, Ralf NETZ
  • Patent number: 10983322
    Abstract: A single plane illumination microscope having an illumination optical system for illuminating a sample located on a sample carrier in a medium, and which is parallel to a planar reference surface. The sample is illuminated by a light sheet via an illumination light path. A detection optical system has a detection beam path. The optical axes of the illumination and detection optical systems each define an angle that is not equal to zero degrees along with the normal to the reference surface. A barrier layer system includes at least one layer of a given material having a given thickness and separates the medium from the illumination and detection optical systems. A base area of the barrier layer system is in contact with the region that is accessible for illumination and detection activities, said base area running parallel to the reference surface.
    Type: Grant
    Filed: October 20, 2017
    Date of Patent: April 20, 2021
    Assignee: Carl Zeiss Microscopy GmbH
    Inventors: Thomas Kalkbrenner, Ralf Netz, Helmut Lippert, Joerg Siebenmorgen
  • Publication number: 20200284715
    Abstract: A method for optically examining a plurality of microscopic samples. The samples are channeled one after the other by means of a flow into at least one flow channel in which the samples advance along a flow direction. The samples are illuminated, and light emitted from the samples is detected and analyzed. A device for carrying out the method in which samples are illuminated in that at least one light sheet with a light sheet plane is directed onto the at least one flow channel, wherein the light sheet is oriented so as to intersect the at least one flow channel in an intersection region, and the normal of the light sheet plane forms an angle differing from null together with the flow direction in the intersection region. The light emitted from the sample is registered by an imaging optical detection unit, and the focal plane of said optical detection unit lies in the intersection region.
    Type: Application
    Filed: September 25, 2018
    Publication date: September 10, 2020
    Applicant: Carl Zeiss Microscopy GmbH
    Inventors: Thomas KALKBRENNER, Joerg SIEBENMORGEN, Thomas OHRT
  • Patent number: 10642015
    Abstract: A light sheet microscope which includes an illumination apparatus generating coherent illumination light for several illumination wavelengths, a beam-shaping module generating a light sheet from illumination light, an illumination objective illuminating a specimen with the light sheet and a detection objective for imaging light which is emitted by the specimen onto a laminar detector, wherein the optical axes of the detection objective and of the illumination objective are not parallel to each other. In such a light sheet microscope, the beam-shaping module includes a phase-selective element with several selection areas separated from each other spatially, wherein in each case one selection area is assigned to one specific illumination wavelength, and wherein a phase distribution predefined for the respective illumination wavelength is impressed on each selection area.
    Type: Grant
    Filed: March 11, 2016
    Date of Patent: May 5, 2020
    Assignee: Carl Zeiss Microscopy GmbH
    Inventors: Helmut Lippert, Tobias Kaufhold, Thomas Kalkbrenner, Joerg Siebenmorgen
  • Patent number: 10477124
    Abstract: A device and a method for imaging a sample arranged in an object plane. The device includes an optical relay system that images an area of the sample from the object plane into an intermediate image plane. The device may also include an optical imaging system with an objective having an optical axis that lies perpendicularly on the intermediate image plan, and which is focused on the intermediate image plane, with the result that the object plane can be imaged undistorted onto a detector. The device also can include an illumination apparatus for illuminating the sample with a light sheet, wherein the light sheet lies essentially in the object plane and defines an illumination direction, and wherein the normal of the object plane defines a detection direction.
    Type: Grant
    Filed: August 31, 2015
    Date of Patent: November 12, 2019
    Assignee: Carl Zeiss Microscopy GmbH
    Inventors: Helmut Lippert, Thomas Kalkbrenner, Ingo Kleppe, Joerg Siebenmorgen, Ralf Wolleschensky
  • Publication number: 20190265454
    Abstract: A single plane illumination microscope having an illumination optical system for illuminating a sample located on a sample carrier in a medium, and which is parallel to a planar reference surface. The sample is illuminated by a light sheet via an illumination light path. A detection optical system has a detection beam path. The optical axes of the illumination and detection optical systems each define an angle that is not equal to zero degrees along with the normal to the reference surface. A barrier layer system includes at least one layer of a given material having a given thickness and separates the medium from the illumination and detection optical systems. A base area of the barrier layer system is in contact with the region that is accessible for illumination and detection activities, said base area running parallel to the reference surface.
    Type: Application
    Filed: October 20, 2017
    Publication date: August 29, 2019
    Applicant: Carl Zeiss Microscopy GmbH
    Inventors: Thomas KALKBRENNER, Ralf NETZ, Helmut LIPPERT, Joerg SIEBENMORGEN
  • Patent number: 10247934
    Abstract: A method for examining a specimen via light sheet microscopy includes selecting several illumination wavelengths for the specimen. To structure the illumination light, a predefined phase distribution is impressed on the phase-selective element and a predefined aperture structure is impressed on an aperture in the aperture plane. The phase-selective element is then illuminated in an intermediate image plane in an illumination beam path with illumination light, which is structured by the phase-selective element. The structured illumination light is imaged into an aperture plane arranged downstream of the phase-selective element. The aperture structure is adapted such that the zero orders of the structured illumination light in the aperture plane are substantially removed. The specimen is illuminated with the structured light sheet in the light sheet plane. Light emitted by the specimen is detected in a detection direction which forms an angle different from zero with the light sheet plane.
    Type: Grant
    Filed: November 18, 2015
    Date of Patent: April 2, 2019
    Assignee: Carl Zeiss Microscopy GmbH
    Inventors: Thomas Kalkbrenner, Helmut Lippert, Joerg Siebenmorgen
  • Publication number: 20180267289
    Abstract: A method for examining a specimen via light sheet microscopy includes selecting several illumination wavelengths for the specimen. To structure the illumination light, a predefined phase distribution is impressed on the phase-selective element and a predefined aperture structure is impressed on an aperture in the aperture plane. The phase-selective element is then illuminated in an intermediate image plane in an illumination beam path with illumination light, which is structured by the phase-selective element. The structured illumination light is imaged into an aperture plane arranged downstream of the phase-selective element. The aperture structure is adapted such that the zero orders of the structured illumination light in the aperture plane are substantially removed. The specimen is illuminated with the structured light sheet in the light sheet plane. Light emitted by the specimen is detected in a detection direction which forms an angle different from zero with the light sheet plane.
    Type: Application
    Filed: November 18, 2015
    Publication date: September 20, 2018
    Inventors: Thomas KALKBRENNER, Helmut LIPPERT, Joerg SIEBENMORGEN
  • Publication number: 20180081159
    Abstract: The invention relates to a light sheet microscope which comprises an illumination apparatus, which generates coherent illumination light for several illumination wavelengths, a beam-shaping module (8) for generating a light sheet from illumination light, an illumination objective (10) for the illumination of a specimen (1) with the light sheet and a detection objective (12) for imaging light which is emitted by the specimen onto a laminar detector, wherein the optical axis of the detection objective (12) forms an angle different from 0° and 180° with the optical axis of the illumination objective (10).
    Type: Application
    Filed: March 11, 2016
    Publication date: March 22, 2018
    Applicant: Carl Zeiss Microscopy GmbH
    Inventors: Helmut LIPPERT, Tobias KAUFHOLD, Thomas KALKBRENNER, Joerg SIEBENMORGEN