Patents by Inventor John Bryan Jones

John Bryan Jones has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 8431121
    Abstract: This invention provides chimeric molecules that are catalytic antagonists of a target molecule. The catalytic antagonists of this invention preferably comprise a targeting moiety attached to an enzyme that degrades the molecule specifically bound by the targeting moiety. The catalytic antagonists of this invention thus bind to a target recognized by the targeting moiety (e.g., a receptor) the enzyme component of the chimera then degrades all or part of the target. This typically results in a reduction or loss of activity of the target and release of the chimeric molecule. The chimeric molecule is then free to attack and degrade another target molecule.
    Type: Grant
    Filed: November 23, 2010
    Date of Patent: April 30, 2013
    Assignees: Danisco US Inc., Governing Council of the University of Toronto
    Inventors: Benjamin G. Davis, John Bryan Jones, Richard R. Bott, Karl John Sanford, David Aaron Estell
  • Patent number: 8357524
    Abstract: This invention provides novel chemically modified mutant serine hydrolases that catalyze a transamidation and/or a transpeptidation and/or a transesterification reaction. The modified serine hydrolases have one or more amino acid residues in a subsite replaced with a cysteine, wherein the cysteine is modified by replacing the thiol hydrogen in the cysteine with a substituent group providing a thiol side chain comprising a moiety selected from the group consisting of a polar aromatic substituent, an alkyl amino group with a positive charge, and a glycoside. In particularly preferred embodiments, the substitutents include an oxazolidinone, a C1 to C15 alkyl amino group with a positive charge, or a glycoside.
    Type: Grant
    Filed: July 30, 2012
    Date of Patent: January 22, 2013
    Assignee: Danisco US Inc.
    Inventors: John Bryan Jones, Michael Dickman, Richard C. Lloyd
  • Publication number: 20120295329
    Abstract: This invention provides novel chemically modified mutant serine hydrolases that catalyze a transamidation and/or a transpeptidation and/or a transesterification reaction. The modified serine hydrolases have one or more amino acid residues in a subsite replaced with a cysteine, wherein the cysteine is modified by replacing the thiol hydrogen in the cysteine with a substituent group providing a thiol side chain comprising a moiety selected from the group consisting of a polar aromatic substituent, an alkyl amino group with a positive charge, and a glycoside. In particularly preferred embodiments, the substitutents include an oxazolidinone, a C1 to C15 alkyl amino group with a positive charge, or a glycoside.
    Type: Application
    Filed: July 30, 2012
    Publication date: November 22, 2012
    Applicant: The Governing Council of the University of Toronto
    Inventors: John Bryan Jones, Michael Dickman, Richard C. Lloyd
  • Publication number: 20120156721
    Abstract: This invention provides novel chemically modified mutant serine hydrolases that catalyze a transamidation and/or a transpeptidation and/or a transesterification reaction. The modified serine hydrolases have one or more amino acid residues in a subsite replaced with a cysteine, wherein the cysteine is modified by replacing the thiol hydrogen in the cysteine with a substituent group providing a thiol side chain comprising a moiety selected from the group consisting of a polar aromatic substituent, an alkyl amino group with a positive charge, and a glycoside. In particularly preferred embodiments, the substitutents include an oxazolidinone, a C1 to C15 alkyl amino group with a positive charge, or a glycoside.
    Type: Application
    Filed: February 24, 2012
    Publication date: June 21, 2012
    Applicant: The Governing Council of the University of Toronto
    Inventors: John Bryan Jones, Michael Dickman, Richard C. Lloyd
  • Patent number: 8148128
    Abstract: This invention provides novel chemically modified mutant serine hydrolases that catalyze a transamidation and/or a transpeptidation and/or a transesterification reaction. The modified serine hydrolases have one or more amino acid residues in a subsite replaced with a cysteine, wherein the cysteine is modified by replacing the thiol hydrogen in the cysteine with a substituent group providing a thiol side chain comprising a moiety selected from the group consisting of a polar aromatic substituent, an alkyl amino group with a positive charge, and a glycoside. In particularly preferred embodiments, the substitutents include an oxazolidinone, a C1 to C15 alkyl amino group with a positive charge, or a glycoside.
    Type: Grant
    Filed: September 19, 2008
    Date of Patent: April 3, 2012
    Assignee: The Governing Council of the University of Toronto
    Inventors: John Bryan Jones, Michael Dickman, Richard C. Lloyd
  • Publication number: 20110262419
    Abstract: This invention provides chimeric molecules that are catalytic antagonists of a target molecule. The catalytic antagonists of this invention preferably comprise a targeting moiety attached to an enzyme that degrades the molecule specifically bound by the targeting moiety. The catalytic antagonists of this invention thus bind to a target recognized by the targeting moiety (e.g., a receptor) the enzyme component of the chimera then degrades all or part of the target. This typically results in a reduction or loss of activity of the target and release of the chimeric molecule. The chimeric molecule is then free to attack and degrade another target molecule.
    Type: Application
    Filed: November 23, 2010
    Publication date: October 27, 2011
    Applicant: DANISCO US, INC.
    Inventors: Benjamin G. Davis, John Bryan Jones, Richard R. Bott, Karl John Stanford, David Aaron Estell
  • Publication number: 20090075329
    Abstract: This invention provides novel chemically modified mutant serine hydrolases that catalyze a transamidation and/or a transpeptidation and/or a transesterification reaction. The modified serine hydrolases have one or more amino acid residues in a subsite replaced with a cysteine, wherein the cysteine is modified by replacing the thiol hydrogen in the cysteine with a substituent group providing a thiol side chain comprising a moiety selected from the group consisting of a polar aromatic substituent, an alkyl amino group with a positive charge, and a glycoside. In particularly preferred embodiments, the substitutents include an oxazolidinone, a C1 to C15 alkyl amino group with a positive charge, or a glycoside.
    Type: Application
    Filed: September 19, 2008
    Publication date: March 19, 2009
    Inventors: John Bryan Jones, Michael Dickman, Richard C. Lloyd
  • Publication number: 20080193389
    Abstract: The present invention is directed to glyodendrimeric proteases, composition with glycodendrimeric proteases and methods for inhibiting adhesion binding in microorganisms by contacting microorganisms with a glycodendrimeric protease or a composition with a glycodendrimeric protease. The invention may be used to treat patients in need of treatment.
    Type: Application
    Filed: October 20, 2006
    Publication date: August 14, 2008
    Inventors: Richard R. Bott, M. M. Cowan, Benjamin G. Davis, John Bryan Jones
  • Patent number: 7371553
    Abstract: This invention provides modified enzymes comprising one or more amino acid residues replaced by cysteine residues, where the cysteine residues are modified by replacing the thiol hydrogen in the cysteine residues with a substituent group providing a thiol side chain comprising a multiply charged moiety. The enzymes show improved interaction and/or specificity and/or activity with charged substrates.
    Type: Grant
    Filed: November 19, 2004
    Date of Patent: May 13, 2008
    Assignees: Genencor International, Inc., The Governing Council of the University of Toronto
    Inventors: Benjamin G. Davis, John Bryan Jones, Richard R. Bott
  • Publication number: 20040170618
    Abstract: This invention provides chimeric molecules that are catalytic antagonists of a target molecule. The catalytic antagonists of this invention preferably comprise a targeting moiety attached to an enzyme that degrades the molecule specifically bound by the targeting moiety. The catalytic antagonists of this invention thus bind to a target recognized by the targeting moiety (e.g., a receptor) the enzyme component of the chimera then degrades all or part of the target. This typically results in a reduction or loss of activity of the target and release of the chimeric molecule. The chimeric molecule is then free to attack and degrade another target molecule.
    Type: Application
    Filed: March 1, 2004
    Publication date: September 2, 2004
    Inventors: Benjamin G. Davis, John Bryan Jones, Richard R. Bott, Karl John Sanford, David Aaron Estell
  • Publication number: 20040097720
    Abstract: The present invention is directed to glyodendrimeric proteases, composition with glycodendrimeric proteases and methods for inhibiting adhesion binding in microorganisms by contacting microorganisms with a glycodendrimeric protease or a composition with a glycodendrimeric protease. The invention may be used to treat patients in need of treatment.
    Type: Application
    Filed: April 16, 2003
    Publication date: May 20, 2004
    Inventors: Richard R. Bott, M. M. Cowan, Benjamin G. Davis, John Bryan Jones
  • Patent number: 6627744
    Abstract: The present invention relates to a chemically modified mutant protein including a cysteine residue substituted for a residue other than cysteine n a precursor protein, the substituted cysteine residue being subsequently modified by reacting the cysteine residue with a glycosylated thiosulfonate. Also a method of producing the chemically modified mutant protein is provided. The present invention also relates to a glycosylated methanethiosulfonate. Another aspect of the present invention is a method of modifying the functional characteristics of a protein including providing a protein and reacting the protein with a glycosylated methanethiosulfonate reagent under conditions effective to produce a glycoprotein with altered functional characteristics as compared to the protein. In addition, the present invention relates to methods of determining the structure-function relationships of chemically modified mutant proteins.
    Type: Grant
    Filed: April 2, 2001
    Date of Patent: September 30, 2003
    Assignee: Genencor International, Inc.
    Inventors: Benjamin G. Davis, John Bryan Jones, Richard R. Bott
  • Publication number: 20020127695
    Abstract: This invention provides modified enzymes comprising one or more amino acid residues replaced by cysteine residues, where the cysteine residues are modified by replacing the thiol hydrogen in the cysteine residues with a substituent group providing a thiol side chain comprising a multiply charged moiety. The enzymes show improved interaction and/or specificity and/or activity with charged substrates.
    Type: Application
    Filed: February 12, 2002
    Publication date: September 12, 2002
    Applicant: GenenCor International, Inc.
    Inventors: Benjamin G. Davis, John Bryan Jones, Richard R. Bott
  • Patent number: 6379942
    Abstract: This invention provides modified enzymes comprising one or more amino acid residues replaced by cysteine residues, where the cysteine residues are modified by replacing the thiol hydrogen in the cysteine residues with a substituent group providing a thiol side chain comprising a multiply charged moiety. The enzymes show improved interaction and/or specificity and/or activity with charged substrates.
    Type: Grant
    Filed: December 20, 1999
    Date of Patent: April 30, 2002
    Assignee: Genencor International, Inc.
    Inventors: Benjamin G. Davis, John Bryan Jones, Richard R. Bott
  • Publication number: 20020019039
    Abstract: The present invention relates to a chemically modified mutant protein including a cysteine residue substituted for a residue other than cysteine n a precursor protein, the substituted cysteine residue being subsequently modified by reacting the cysteine residue with a glycosylated thiosulfonate. Also a method of producing the chemically modified mutant protein is provided. The present invention also relates to a glycosylated methanethiosulfonate. Another aspect of the present invention is a method of modifying the functional characteristics of a protein including providing a protein and reacting the protein with a glycosylated methanethiosulfonate reagent under conditions effective to produce a glycoprotein with altered functional characteristics as compared to the protein. In addition, the present invention relates to methods of determining the structure-function relationships of chemically modified mutant proteins.
    Type: Application
    Filed: April 2, 2001
    Publication date: February 14, 2002
    Inventors: Benjamin G. Davis, John Bryan Jones, Richard R. Bott