Patents by Inventor John L. Schroeder

John L. Schroeder has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20210280268
    Abstract: The present invention is an accelerated conformational sampling method for predicting target peptide and protein structures comprising a process of determining energy minimized synthetic templates using a simple system for modeling individual molecular bonds within the subject peptide or protein. Use of these synthetic templates greatly reduces the computational resources necessary for optimally determining structural features of the target peptide or protein. The present invention also provides methods for rapid and efficient analysis of the effect of mutations on target peptides and proteins.
    Type: Application
    Filed: May 20, 2021
    Publication date: September 9, 2021
    Applicant: DNASTAR, INC.
    Inventors: Frederick R. BLATTNER, Steven J. DARNELL, Matthew R. LARSON, Amanda E. MITCHELL, John L. SCHROEDER
  • Patent number: 11031094
    Abstract: The present invention is an accelerated conformational sampling method for predicting target peptide and protein structures comprising a process of determining energy minimized synthetic templates using a simple system for modeling individual molecular bonds within the subject peptide or protein. Use of these synthetic templates greatly reduces the computational resources necessary for optimally determining structural features of the target peptide or protein. The present invention also provides methods for rapid and efficient analysis of the effect of mutations on target peptides and proteins.
    Type: Grant
    Filed: July 15, 2016
    Date of Patent: June 8, 2021
    Assignee: DNASTAR, INC.
    Inventors: Frederick R. Blattner, Steven J. Darnell, Matthew R. Larson, Amanda E. Mitchell, John L. Schroeder
  • Publication number: 20180260517
    Abstract: The present invention is an accelerated conformational sampling method for predicting target peptide and protein structures comprising a process of determining energy minimized synthetic templates using a simple system for modeling individual molecular bonds within the subject peptide or protein. Use of these synthetic templates greatly reduces the computational resources necessary for optimally determining structural features of the target peptide or protein. The present invention also provides methods for rapid and efficient analysis of the effect of mutations on target peptides and proteins.
    Type: Application
    Filed: July 15, 2016
    Publication date: September 13, 2018
    Applicant: DNASTAR, INC.
    Inventors: Frederick R. BLATTNER, Steven J. DARNELL, Matthew R. LARSON, Amanda E. MITCHELL, John L. SCHROEDER
  • Patent number: 7486693
    Abstract: A computing network uses Time Division Multiplexing (TDM) to divide the time on a bus into a plurality of frames, each frame having a plurality of time slots. Each time slot is assigned no more than one of the plurality of devices within a collision domain, the assignments indicating the identity of the device permitted to transmit packets onto the network during the assigned time slot. A bus cadence unit simultaneously sends an epoch packet initiating the frame. The epoch packet contains a time slot assignment table containing the time slot assignments, the device identification, as well as a time slot offset and duration. Each device on the network is configured to measure a frame interval between repeating epoch packets. The measured frame interval is further processed in each receiving node to obtain a calibrated frame interval. The calibrated frame interval is used to accurately synchronize transmissions of data from the various devices onto the network.
    Type: Grant
    Filed: March 26, 2002
    Date of Patent: February 3, 2009
    Assignee: General Electric Company
    Inventors: Randy L. Walter, John L. Schroeder, Gerald W. Vanbaren, Donald G. Hodges, Courtney L. Albers
  • Publication number: 20030115369
    Abstract: A computing network uses Time Division Multiplexing (TDM) to divide the time on a bus into a plurality of frames, each frame having a plurality of time slots. Each time slot is assigned no more than one of the plurality of devices within a collision domain, the assignments indicating the identity of the device permitted to transmit packets onto the network during the assigned time slot. A bus cadence unit simultaneously sends an epoch packet initiating the frame. The epoch packet contains a time slot assignment table containing the time slot assignments, the device identification, as well as a time slot offset and duration. Each device on the network is configured to measure a frame interval between repeating epoch packets. The measured frame interval is further processed in each receiving node to obtain a calibrated frame interval. The calibrated frame interval is used to accurately synchronize transmissions of data from the various devices onto the network.
    Type: Application
    Filed: March 26, 2002
    Publication date: June 19, 2003
    Inventors: Randy L. Walter, John L. Schroeder, Gerald W. Vanbaran, Donald G. Hodges, Courtney L. Albers
  • Patent number: 5902562
    Abstract: A method for preparing carbon materials having high surface area and high macropore volume to provide high permeability. These carbon materials are prepared by dissolving a carbonizable polymer precursor, in a solvent. The solution is cooled to form a gel. The solvent is extracted from the gel by employing a non-solvent for the polymer. The non-solvent is removed by critical point drying in CO.sub.2 at an elevated pressure and temperature or evaporation in a vacuum oven. The dried product is heated in an inert atmosphere in a first heating step to a first temperature and maintained there for a time sufficient to substantially cross-link the polymer material. The cross-linked polymer material is then carbonized in an inert atmosphere.
    Type: Grant
    Filed: October 27, 1997
    Date of Patent: May 11, 1999
    Assignee: Sandia Corporation
    Inventors: Robert R. Lagasse, John L. Schroeder
  • Patent number: 5187775
    Abstract: A display system for use on a digital computer is specifically designed to display information about nucleotide sequences, such as DNA sequences and the protein or amino acid sequences associated with those nucleotide sequences. The system uses a specially adapted font which includes special three letter characters representing the amino acids. The letters in the special characters are kerned for compact presentation. The use of such three letter characters, created to be of a width three times that of the remaining monospace characters in the font, allows amino acid sequences to be stored and presented with the corresponding nucleotide sequences in such a fashion that they are properly aligned and also usually legible.
    Type: Grant
    Filed: March 15, 1990
    Date of Patent: February 16, 1993
    Assignee: Dnastar, Inc.
    Inventors: John L. Schroeder, Michael R. Slater
  • Patent number: 4771384
    Abstract: A system and method for the construction of one-dimensional maps from fragmentation data is disclosed. Particularly useful for construction of restriction maps of DNA, the system and method completely permutes sites, single digest fragments, and any available multiple digest fragments, and displays maps in rank-order according to a quality factor. Display of constructed maps includes information about relative ordering of all fragments, sites, and particularly about closely-spaced sites and fragments.
    Type: Grant
    Filed: July 24, 1986
    Date of Patent: September 13, 1988
    Assignee: Dnastar, Inc.
    Inventors: Donna L. Daniels, John L. Schroeder, Frederick R. Blattner, Michael Waterman