Patents by Inventor John Lyles

John Lyles has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 8551704
    Abstract: The invention provides methods and compositions for the controlled termination of polymerase mediated primer extension reactions. The methods and compositions of the invention are broadly useful, and in a preferred aspect can be used in identifying sequence elements of template nucleic acids. Control of termination not only provides temporal control over termination, but, when used in conjunction with optically confined reaction regions, also spatially controls such termination.
    Type: Grant
    Filed: February 11, 2008
    Date of Patent: October 8, 2013
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Geoffrey Otto, John Lyle
  • Publication number: 20130212885
    Abstract: An electric shaver includes a housing and a cutter surface, the housing provides a container for the motor and power source components and further provides a graspable form or grip that fits the hand in a comfortable manner when the shaver is oriented with the grip above the cutter surface. In this orientation, the cutter faces downward with the grip above the cutter so as to meet the skin surface of the scalp. The cutter surface may comprise a housing made of a flexible material such as a castable elastomer that allows the cutter surface to meet the complex curvilinear surface of the head. The grip portion of the housing comprises a pair of concave surfaces each comprising a central axis that is parallel to the cutter surface and, therefore, tangent to the curved surface being shaved.
    Type: Application
    Filed: August 8, 2011
    Publication date: August 22, 2013
    Inventor: John Lyles
  • Patent number: 8440793
    Abstract: Provided herein are stable peptide analogs of the native alpha-melanocyte stimulating hormone (?-MSH) having selectivity for the melanocortin 1 receptor (MC1R). Also provided herein are pharmaceutical preparations of the ?-MSH peptide analogs, as well as methods of using these analogs in the treatment of medical and veterinary conditions involving MC1R.
    Type: Grant
    Filed: March 20, 2009
    Date of Patent: May 14, 2013
    Assignee: Genzyme Corporation
    Inventors: Michael A. Perricone, John Lyle Dzuris, Timothy E. Weeden, James E. Stefano, Clark Q. Pan, Andrea E. Edling
  • Patent number: 8388982
    Abstract: Compositions, devices, systems and methods for reducing and/or preventing photo-induced damage of one or more reactants in an illuminated analytical reaction by addition of one or more photo-induced damage mitigating agents to the reaction mixture and allowing the reaction to proceed for a period that is less than a photo-induced damage threshold period.
    Type: Grant
    Filed: November 19, 2009
    Date of Patent: March 5, 2013
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Xiangxu Kong, Gene Shen, Andrei Fedorov, John Lyle, Grace Lee, Lubomir Sebo, Duc Do, Robert Weber, Stephen Dudek
  • Publication number: 20130038717
    Abstract: A method and apparatus for identifying a position of a platform. Features are identified in a series of images generated by a camera system associated with the platform while the platform is moving. A shift in a perspective of the camera system is identified from a shift in a position of the features in the series of images. A change in the position of the platform is identified based on the shift in the perspective.
    Type: Application
    Filed: August 9, 2011
    Publication date: February 14, 2013
    Applicant: THE BOEING COMPANY
    Inventors: Carson Reynolds, Emad William Saad, John Lyle Vian, Masatoshi Ishikawa
  • Publication number: 20130029853
    Abstract: Methods, compositions, and systems are provided for characterization of modified nucleic acids. In certain preferred embodiments, single molecule sequencing methods are provided for identification of modified nucleotides within nucleic acid sequences. Modifications detectable by the methods provided herein include chemically modified bases, enzymatically modified bases, abasic sites, non-natural bases, secondary structures, and agents bound to a template nucleic acid.
    Type: Application
    Filed: October 2, 2012
    Publication date: January 31, 2013
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Benjamin Flusberg, Stephen Turner, Jessica Lee, Lei Jia, Jonas Korlach, Jon Sorenson, Dale Webster, John Lyle, Kevin Travers, Jeremiah Hanes, Joseph Puglisi
  • Publication number: 20130017838
    Abstract: A method and apparatus comprising a location reference system and a control module. The location reference system is configured to generate location information for a number of mobile platforms in an environment. The control module is configured to receive the location information for the number of mobile platforms from the location reference system. The control module is further configured to generate command signals for the number of mobile platforms using the location information. The control module is further configured to send the command signals to the number of mobile platforms to operate the number of mobile platforms in the environment such that operation of the number of mobile platforms emulates the operation of a number of spacecraft systems in a non-Earth terrestrial environment.
    Type: Application
    Filed: July 15, 2011
    Publication date: January 17, 2013
    Applicant: THE BOEING COMPANY
    Inventors: Matthew Aaron Vavrina, John Lyle Vian
  • Publication number: 20120302459
    Abstract: Methods of producing substrates having selected active chemical regions by employing elements of the substrates in assisting the localization of active chemical groups in desired regions of the substrate. The methods may include optical, chemical and/or mechanical processes for the deposition, removal, activation and/or deactivation of chemical groups in selected regions of the substrate to provide selective active regions of the substrate.
    Type: Application
    Filed: June 4, 2012
    Publication date: November 29, 2012
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: David R. Rank, Jeffrey Wegener, Jonas Korlach, Daniel Roitman, Yue Xu, John Lyle, Stephen Turner, Paul Peluso, Geoff Otto, Ron Cicero
  • Publication number: 20120261144
    Abstract: A method and apparatus for managing fires. A computer system is configured to receive fire related information from at least a first portion of a plurality of assets and analyze the fire-related information to generate a result. The computer system is configured to coordinate an operation of a second portion of the plurality of assets using the result.
    Type: Application
    Filed: April 14, 2011
    Publication date: October 18, 2012
    Applicant: THE BOEING COMPANY
    Inventors: John Lyle Vian, Emad William Saad
  • Patent number: 8193123
    Abstract: Methods of producing substrates having selected active chemical regions by employing elements of the substrates in assisting the localization of active chemical groups in desired regions of the substrate. The methods may include optical, chemical and/or mechanical processes for the deposition, removal, activation and/or deactivation of chemical groups in selected regions of the substrate to provide selective active regions of the substrate.
    Type: Grant
    Filed: October 26, 2007
    Date of Patent: June 5, 2012
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: David R. Rank, Jeffery Wegener, Jonas Korlach, Daniel Roitman, Yue Xu, John Lyle, Stephen Turner, Paul Peluso, Geoff Otto, Ron Cicero
  • Patent number: 8133672
    Abstract: Compositions, kits, methods and systems for nucleotide sequencing comprising producing polymerase reactions that exhibit two kinetically observable steps within an observable phase of the polymerase reaction. Two slow step systems can be produced, for example, by selecting the appropriate polymerase enzyme, polymerase reaction conditions including cofactors, and polymerase reaction substrates including the primed template and nucleotides.
    Type: Grant
    Filed: March 30, 2009
    Date of Patent: March 13, 2012
    Assignee: Pacific Biosciences of California, Inc.
    Inventors: Keith Bjornson, Harold Lee, Jonas Korlach, Stephen Turner, Arek Bibillo, Fred Christians, Robin Emig, Molly He, Insil Park, Lei Jia, Andrei Fedorov, John Lyle
  • Publication number: 20120052488
    Abstract: Compositions, devices, systems and methods for reducing and/or preventing photo-induced damage of one or more reactants in an illuminated analytical reaction by addition of one or more photoprotective compounds to the reaction mixture and allowing the reaction to proceed for a period that is less than a photo-induced damage threshold period.
    Type: Application
    Filed: August 11, 2011
    Publication date: March 1, 2012
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Stephen Yue, Robert Weber, Xiangxu Kong, Andrei Fedorov, John Lyle
  • Publication number: 20120009567
    Abstract: Compositions, kits, methods and systems for single molecule nucleotide sequencing comprising producing polymerase reactions having monovalent cations that control the median pulse width for incorporated nucleotides are disclosed. The levels of alkali metals such as lithium, sodium, potassium, rubidium, and cesium in the polymerization are used to control pulse width while allowing other sequencing parameters to remain within a desirable range.
    Type: Application
    Filed: July 7, 2011
    Publication date: January 12, 2012
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Andrei Fedorov, John Lyle, Keith Bjornson, Jeremiah Hanes
  • Publication number: 20110283285
    Abstract: The different advantageous embodiments provide a system comprising a number of computers, a graphical user interface, first program code stored on the computer, and second program code stored on the computer. The graphical user interface is executed by a computer in the number of computers. The computer is configured to run the first program code to define a mission using a number of mission elements. The computer is configured to run the second program code to generate instructions for a number of assets to execute the mission and monitor the number of assets during execution of the mission.
    Type: Application
    Filed: May 14, 2010
    Publication date: November 17, 2011
    Applicant: THE BOEING COMPANY
    Inventors: Emad William Saad, Stefan Richard Bieniawski, Paul Edward Riley Pigg, John Lyle Vian, Paul Michael Robinette, Donald Coolidge Wunsch, II
  • Patent number: 8060270
    Abstract: A method for inspecting structures that includes using a plurality of independent unmanned mobile vehicles. The unmanned mobile vehicles are equipped with a control and guidance system for enabling each unmanned mobile vehicle to operate autonomously. Each unmanned mobile vehicle may be programmed with an operating program that defines a path of travel for it, relative to a structure to be inspected. The unmanned mobile vehicles are deployed so that they cooperatively form a swarm that travels about the structure. At least one of said unmanned mobile vehicles is used to obtain inspection data of a portion of the structure as it executes its respective operating program.
    Type: Grant
    Filed: May 21, 2008
    Date of Patent: November 15, 2011
    Assignee: The Boeing Company
    Inventors: John Lyle Vian, Ali Reza Mansouri, Emad William Saad
  • Publication number: 20110183320
    Abstract: Methods, compositions, and systems are provided for characterization of modified nucleic acids. In certain preferred embodiments, single molecule sequencing methods are provided for identification of modified nucleotides within nucleic acid sequences. Modifications detectable by the methods provided herein include chemically modified bases, enzymatically modified bases, abasic sites, non-natural bases, secondary structures, and agents bound to a template nucleic acid.
    Type: Application
    Filed: November 12, 2010
    Publication date: July 28, 2011
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Benjamin Flusberg, Jonas Korlach, Jeffrey Wegener, Tyson A. Clark, Igor Vilfan, Andrey Kislyuk, Stephen Turner, Jon Sorenson, Kevin Travers, Cheryl Heiner, Austin B. Tomaney, Patrick Marks, Jessica Lee, Lei Jia, Dale Webster, John Lyle, Jeremiah Hanes, Joseph Puglisi
  • Publication number: 20110160077
    Abstract: Systems and methods are provided for single-molecule sequencing of template nucleic acids in which the signal from a label attached to a polymerase enzyme is used to monitor conformational changes in the polymerase which occur while labeled nucleotides or nucleotide analogs are added to a growing nucleic acid chain which is complementary to the template nucleic acid. The signal indicative of the conformational state of the enzyme is used to determine with higher confidence when true nucleotide or nucleotide analog incorporation events occur, allowing for the improved quality of base calls and sequence determination.
    Type: Application
    Filed: December 14, 2010
    Publication date: June 30, 2011
    Applicant: Pacific Biosciences of California, Inc.
    Inventors: Mark Chaisson, Sonya Clark, Christopher Silk, John Lyle, Lei Jia, Keith Bjornson
  • Patent number: 7948147
    Abstract: A sensor network is described which includes a stretchable silicon substrate, and a plurality of nodes fabricated on the stretchable silicon substrate. The nodes include at least one of an energy harvesting and storage element, a communication device, a sensing device, and a processor. The nodes are interconnected via interconnecting conductors formed in the substrate.
    Type: Grant
    Filed: February 19, 2009
    Date of Patent: May 24, 2011
    Assignee: The Boeing Company
    Inventors: Michael Alexander Carralero, John Lyle Vian
  • Publication number: 20110082717
    Abstract: The different advantageous embodiments further provide a system for hierarchical mission management comprising a number of mission planners, a data processing system, and a communication system. The number of mission planners are associated with a number of agent groups. The data processing system is configured to execute the number of mission planners. The communication system is configured to provide communication between the number of mission planners.
    Type: Application
    Filed: October 5, 2009
    Publication date: April 7, 2011
    Applicant: THE BOEING COMPANY
    Inventors: Emad William Saad, John Lyle Vian, Ryan James Meuth, Donald C. Wunsch, II
  • Patent number: D672504
    Type: Grant
    Filed: August 11, 2011
    Date of Patent: December 11, 2012
    Inventor: John Lyles