Patents by Inventor John M Clemens

John M Clemens has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20200370097
    Abstract: The present invention provides systems, devices, methods, kits, and compositions for nucleic acid analysis using digital PCR. In particular, methods are provided to analyze high titer samples that cannot be divided into a sufficient number of partitions containing zero nucleic acid molecules per partition to allow for Poisson analysis (digital PCR analysis).
    Type: Application
    Filed: August 11, 2020
    Publication date: November 26, 2020
    Inventors: John M. Clemens, Eric B. Shain
  • Patent number: 10774376
    Abstract: The present invention provides systems, devices, methods, kits, and compositions for nucleic acid analysis using digital PCR. In particular, methods are provided to analyze high titer samples that cannot be divided into a sufficient number of partitions containing zero nucleic acid molecules per partition to allow for Poisson analysis (digital PCR analysis).
    Type: Grant
    Filed: December 28, 2015
    Date of Patent: September 15, 2020
    Assignee: ABBOTT MOLECULAR INC.
    Inventors: John M. Clemens, Eric B. Shain
  • Publication number: 20200123605
    Abstract: Provided herein are systems and methods for nucleic acid sequencing by synthesis in a plurality of wells using detectably labeled chain terminating nucleotides with photolabile blocking groups and pulses of photocleaving light. In certain embodiments, the systems and methods provides a plurality of deblock-scan cycles comprising an initial deblock time period followed by a scanning light period, wherein at least one of the following occurs in each deblock-scan cycle: 1) the deblock time period is shorter than the scan time period; 2) the deblock time period is only long enough to deblock the photolabile groups that are part of a primer in less than all of the plurality of wells; or 3) the deblock time period is between 25 and 150 mSec and the scan time is at least 200 mSec. Such shorter deblock time periods help prevent the addition of more than one nucleotide to the primer prior to scanning (e.g., accuracy is enhanced).
    Type: Application
    Filed: December 23, 2019
    Publication date: April 23, 2020
    Inventors: Mark W. Eshoo, John M. Clemens, Mark A. Hayden
  • Patent number: 10550428
    Abstract: Provided herein are systems and methods for nucleic acid sequencing by synthesis in a plurality of wells using detectably labeled chain terminating nucleotides with photolabile blocking groups and pulses of photocleaving light. In certain embodiments, the systems and methods provides a plurality of deblock-scan cycles comprising an initial deblock time period followed by a scanning light period, wherein at least one of the following occurs in each deblock-scan cycle: 1) the deblock time period is shorter than the scan time period; 2) the deblock time period is only long enough to deblock the photolabile groups that are part of a primer in less than all of the plurality of wells; or 3) the deblock time period is between 25 and 150 mSec and the scan time is at least 200 mSec. Such shorter deblock time periods help prevent the addition of more than one nucleotide to the primer prior to scanning (e.g., accuracy is enhanced).
    Type: Grant
    Filed: September 16, 2015
    Date of Patent: February 4, 2020
    Assignee: IBIS BIOSCIENCES, INC.
    Inventors: Mark W. Eshoo, John M. Clemens, Mark A. Hayden
  • Publication number: 20170247755
    Abstract: Provided herein are systems and methods for nucleic acid sequencing by synthesis in a plurality of wells using detectably labeled chain terminating nucleotides with photolabile blocking groups and pulses of photocleaving light. In certain embodiments, the systems and methods provides a plurality of deblock-scan cycles comprising an initial deblock time period followed by a scanning light period, wherein at least one of the following occurs in each deblock-scan cycle: 1) the deblock time period is shorter than the scan time period; 2) the deblock time period is only long enough to deblock the photolabile groups that are part of a primer in less than all of the plurality of wells; or 3) the deblock time period is between 25 and 150 mSec and the scan time is at least 200 mSec. Such shorter deblock time periods help prevent the addition of more than one nucleotide to the primer prior to scanning (e.g., accuracy is enhanced).
    Type: Application
    Filed: September 16, 2015
    Publication date: August 31, 2017
    Inventors: Mark W. Eshoo, John M. Clemens, Mark A. Hayden
  • Publication number: 20160130636
    Abstract: The present invention provides systems, devices, methods, kits, and compositions for nucleic acid analysis using digital PCR. In particular, methods are provided to analyze high titer samples that cannot be divided into a sufficient number of partitions containing zero nucleic acid molecules per partition to allow for Poisson analysis (digital PCR analysis).
    Type: Application
    Filed: December 28, 2015
    Publication date: May 12, 2016
    Inventors: John M. Clemens, Eric B. Shain
  • Patent number: 9222886
    Abstract: Systems, devices, methods, kits, and compositions for nucleic acid analysis using digital PCR are provided. In particular, methods to analyze high titer samples that cannot be divided into a sufficient number of partitions containing zero nucleic acid molecules per partition to allow for Poisson analysis (digital PCR analysis) are described.
    Type: Grant
    Filed: December 27, 2011
    Date of Patent: December 29, 2015
    Assignee: ABBOTT MOLECULAR INC.
    Inventors: John M. Clemens, Eric B. Shain
  • Publication number: 20140302505
    Abstract: Disclosed are example methods and systems to determine the quantity of an analyte initially present in a chemical and or biological reaction. Also disclosed are computer implemented methods and systems to automate portions of the analysis comprising mathematical or graphical analysis of an amplification reaction.
    Type: Application
    Filed: April 25, 2014
    Publication date: October 9, 2014
    Inventors: Eric B. Shain, John M. Clemens, Tzyy-Wen Jeng, George J. Schneider
  • Publication number: 20120215457
    Abstract: Disclosed are example methods and systems to determine the quantity of an analyte initially present in a chemical and or biological reaction. Also disclosed are computer implemented methods and systems to automate portions of the analysis comprising mathematical or graphical analysis of an amplification reaction.
    Type: Application
    Filed: January 13, 2012
    Publication date: August 23, 2012
    Inventors: ERIC B. SHAIN, John M. Clemens, Tzyy-Wen Jeng, George J. Schneider
  • Publication number: 20120164652
    Abstract: The present invention provides systems, devices, methods, kits, and compositions for nucleic acid analysis using digital PCR. In particular, methods are provided to analyze high titer samples that cannot be divided into a sufficient number of partitions containing zero nucleic acid molecules per partition to allow for Poisson analysis (digital PCR analysis).
    Type: Application
    Filed: December 27, 2011
    Publication date: June 28, 2012
    Applicant: IBIS BIOSCIENCES, INC.
    Inventors: John M. Clemens, Eric B. Shain
  • Patent number: 8099243
    Abstract: A method and system for determining the quantity of an analyte initially present in a chemical and or biological reaction as well as a computer implemented method and system to automate portions of the analysis comprising mathematical or graphical analysis of an amplification reaction.
    Type: Grant
    Filed: August 11, 2008
    Date of Patent: January 17, 2012
    Assignee: Abbott Laboratories
    Inventors: Eric B. Shain, John M. Clemens, Tzyy-Wen Jeng, George J. Schneider
  • Patent number: 8005625
    Abstract: A method and system for determining the quantity of an analyte initially present in a chemical and or biological reaction as well as a computer implemented method and system to automate portions of the analysis comprising mathematical or graphical analysis of an amplification reaction.
    Type: Grant
    Filed: August 11, 2008
    Date of Patent: August 23, 2011
    Assignee: Abbott Laboratories, Inc.
    Inventors: Eric B. Shain, John M. Clemens, Tzyy-Wen Jeng, George J. Schneider
  • Patent number: 7565250
    Abstract: A method and system for determining the quantity of an analyte initially present in a chemical and or biological reaction as well as a computer implemented method and system to automate portions of the analysis comprising mathematical or graphical analysis of an amplification reaction.
    Type: Grant
    Filed: November 17, 2004
    Date of Patent: July 21, 2009
    Assignee: Abbott Laboratories Inc.
    Inventors: Eric B. Shain, John M. Clemens, Tzyy-Wen Jeng, George J. Schneider
  • Publication number: 20090047679
    Abstract: A method and system for determining the quantity of an analyte initially present in a chemical and or biological reaction as well as a computer implemented method and system to automate portions of the analysis comprising mathematical or graphical analysis of an amplification reaction.
    Type: Application
    Filed: August 11, 2008
    Publication date: February 19, 2009
    Applicant: Abbott Laboratories
    Inventors: Eric B. Shain, John M. Clemens, Tzyy-Wen Jeng, George J. Schneider
  • Publication number: 20080299583
    Abstract: A method and system for determining the quantity of an analyte initially present in a chemical and or biological reaction as well as a computer implemented method and system to automate portions of the analysis comprising mathematical or graphical analysis of an amplification reaction.
    Type: Application
    Filed: August 11, 2008
    Publication date: December 4, 2008
    Applicant: ABBOTT LABORATORIES
    Inventors: Eric B. Shain, John M. Clemens, Tzyy-Wen Jeng, George J. Schneider
  • Publication number: 20020127727
    Abstract: A method of performing a determination of an item of interest in a sample using a single structure is disclosed. A sample is provided accessible to the single structure. A first container for processing the sample is placed in a first process path on the single structure. The sample is transferred to the first container in the first process path. A reagent is added to the first container in the first process path. Contents of the first container is mixed in the first process path. The item of interest in the sample is separated from the contents of the first container in the first process path. The separated item of interest in the sample is transferred from the first container in the first process path to a second container in a second process path on the single structure. Contents of the second container is brought to a first temperature different from a temperature of the first process path in the second process path. The item of interest in the second container is detected in the second process path.
    Type: Application
    Filed: March 7, 2002
    Publication date: September 12, 2002
    Inventors: Mark C. Bach, Daniel Bay, Michael K. Carter, John M. Clemens, Daniel G. Dahlke, Charles M. Galitz, Robert C. Gray, Folim Halaka, Steve Herchenbach, Ronald E. Kukla, Curtis J. Pepe, Mark Pierce, Scott G. Safar, Julius Toth, Gary Zuck
  • Patent number: 6413780
    Abstract: A method of performing a determination of an item of interest in a sample using a single structure is disclosed. A sample is provided accessible to the single structure. A first container for processing the sample is placed in a first process path on the single structure. The sample is transferred to the first container in the first process path. A reagent is added to the first container in the first process path. Contents of the first container is mixed in the first process path. The item of interest in the sample is separated from the contents of the first container in the first process path. The separated item of interest in the sample is transferred from the first container in the first process path to a second container in a second process path on the single structure. Contents of the second container is brought to a first temperature different from a temperature of the first process path in the second process path. The item of interest in the second container is detected in the second process path.
    Type: Grant
    Filed: October 11, 1999
    Date of Patent: July 2, 2002
    Assignee: Abbott Laboratories
    Inventors: Mark C. Bach, Daniel Bay, Michael K. Carter, John M. Clemens, Daniel G. Dahlke, Charles M. Galitz, Robert C. Gray, Folim Halaka, Steve Herchenbach, Ronald E. Kukla, Curtis J. Pepe, Mark Pierce, Scott G. Safar, Julius Toth, Gary Zuck
  • Patent number: 6190617
    Abstract: A sample container segment assembly for use in an automated, continuous, and random access analytical system is disclosed. The assembly includes a sample container which is received by a sample container segment, and the sample container segment is received on a carousel of the automated analytical instrument. The test sample container includes an upper skirt and a body having a reservoir for receipt of the test sample. The segment includes a base, a frame, and a handle. The frame has a shelf for which the upper skirt of the test sample container rests on, and has openings for receipt of the body of the sample container. The carousel has a carousel trough for receipt of the base of the sample container segment, and has a plurality of alignment pins disposed in the carousel trough. The base of the sample container segment has a circular slot and an elongated slot for receiving the alignment pins and positioning the sample container segment relative to the carousel.
    Type: Grant
    Filed: October 23, 1997
    Date of Patent: February 20, 2001
    Assignee: Abbott Laboratories
    Inventors: Frederick L. Clark, Larry W. Moore, Donny Ray Walker, John M Clemens, William J. Kanewske, III, B. Jane Smith
  • Patent number: 5960160
    Abstract: A liquid heater assembly including a heater body having therein a coiled tube for passing liquids, a pair of heating elements, a thermistor, a thermostat, and a backup thermostat. Liquid enters the coiled liquid tube at an inlet end and exits the coiled liquid tube at an outlet end. The coiled liquid tube is positioned within the heater body between the pair of heating elements. The outlet end extends below a planar surface of the heater body. The thermistor detects the temperature changes of the heater body. The resistance of the thermistor is used to regulate the supply of power to the heating elements. The thermostat and the backup thermostat are connected in series between the power source and the heating elements to provide a safety shutoff when the heater body reaches a predetermined overheat temperature. The heater body is maintained at a predetermined temperature by regulating the electrical current to the heating elements.
    Type: Grant
    Filed: December 28, 1995
    Date of Patent: September 28, 1999
    Assignee: Abbott Laboratories
    Inventors: Frederic L. Clark, Richard R. Martin, Larry W. Moore, John M. Clemens, William D. Rumbaugh, B. Jane Smith
  • Patent number: 5762878
    Abstract: A sample container segment assembly for use in an automated, continuous, and random access analytical system is disclosed. The assembly includes a sample container which is received by a sample container segment, and the sample container segment is received on a carousel of the automated analytical instrument. The test sample container includes an upper skirt and a body having a reservoir for receipt of the test sample. The segment includes a base, a frame, and a handle. The frame has a shelf for which the upper skirt of the test sample container rests on, and has openings for receipt of the body of the sample container. The carousel has a carousel trough for receipt of the base of the sample container segment, and has a plurality of alignment pins disposed in the carousel trough. The base of the sample container segment has a circular slot and an elongated slot for receiving the alignment pins and positioning the sample container segment relative to the carousel.
    Type: Grant
    Filed: September 9, 1996
    Date of Patent: June 9, 1998
    Assignee: Abbott Laboratories
    Inventors: Frederick L. Clark, Kendall B. Hendrick, Richard R. Martin, Larry W. Moore, William J. Raymoure, Paul R. Schrier, Edna S. Walker, Donny Ray Walker, Gary E. Winter, Kevin M. Cloonan, David A. Yost, John M. Clemens, William J. Kanewske, III, Douglas D. McDowell, Carl M. Oleksak, William D. Rumbaugh, B. Jane Smith, James A. Vaught, Apparao Tayi, Robert A. Wohlford, James E. Mitchell, Robert B. Hance, Peter A. Lagocki, Richard A. Merriam, Charles D. Pennington, Linda S. Schmidt, Adrian M. Spronk, Richard L. Vickstrom, William E. Watkins, III, Gilbert Clift, Alyn K. Stanton, David B. Hills