Patents by Inventor John R. Stuelpnagel

John R. Stuelpnagel has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20030157504
    Abstract: The invention relates to compositions and methods for multiplex decoding of microsphere array sensors.
    Type: Application
    Filed: June 28, 2002
    Publication date: August 21, 2003
    Inventors: Mark S. Chee, John R. Stuelpnagel, Anthony W. Czarnik
  • Publication number: 20030108900
    Abstract: The invention is directed to a variety of multiplexing methods used to amplify and/or genotype a variety of samples simultaneously.
    Type: Application
    Filed: July 12, 2002
    Publication date: June 12, 2003
    Inventors: Arnold Oliphant, John R. Stuelpnagel, Mark S. Chee, Scott L. Butler
  • Publication number: 20030108867
    Abstract: The invention relates to DNA sequencing by synthesis techniques, including those utilizing the detection of pyrophosphate (PPi) generated during the DNA synthesis reaction (pyrosequencing). The methods and compositions utilize biosensor arrays comprising microspheres distributed on a surface.
    Type: Application
    Filed: February 25, 2000
    Publication date: June 12, 2003
    Inventors: Mark S Chee, John R Stuelpnagel
  • Publication number: 20030036064
    Abstract: The present invention relates to detection or genotyping (or other sample analysis) of target nucleic acids following immobilization of the target nucleic acids onto a surface. The target nucleic acids can be re-used multiple times, thus conserving sample materials and simplifying sample preparation.
    Type: Application
    Filed: August 16, 2001
    Publication date: February 20, 2003
    Inventors: John R. Stuelpnagel, Mark S. Chee
  • Publication number: 20020187515
    Abstract: The invention relates to compositions and methods for decoding microsphere array sensors.
    Type: Application
    Filed: July 12, 2002
    Publication date: December 12, 2002
    Applicant: Illumina, Inc.
    Inventors: Mark S. Chee, Steven R. Auger, John R. Stuelpnagel
  • Publication number: 20020150909
    Abstract: The invention relates to the use of a computer system to compare images generated from a randomly ordered array. This system preserves the relative position of each site within the array so that the same site can be compared in different images.
    Type: Application
    Filed: August 9, 2001
    Publication date: October 17, 2002
    Inventors: John R. Stuelpnagel, Mark S. Chee, Todd A. Dickinson, Bahram G. Kermani, Juergen Haas
  • Publication number: 20020132221
    Abstract: The invention relates to compositions and methods for decoding microsphere array sensors.
    Type: Application
    Filed: June 24, 1999
    Publication date: September 19, 2002
    Inventors: MARK S. CHEE, JOHN R. STUELPNAGEL, ANTHONY W. CZARNIK
  • Publication number: 20020132241
    Abstract: The present invention is directed to sensitive and accurate multiplexed assays for target analyte detection.
    Type: Application
    Filed: July 24, 2001
    Publication date: September 19, 2002
    Inventors: Jian-Bing Fan, John R. Stuelpnagel, Mark S. Chee
  • Patent number: 6429027
    Abstract: The invention relates to compositions and methods for decoding microsphere array sensors.
    Type: Grant
    Filed: February 24, 1999
    Date of Patent: August 6, 2002
    Assignee: Illumina, Inc.
    Inventors: Mark S. Chee, Steven R. Auger, John R. Stuelpnagel
  • Patent number: 6396995
    Abstract: A holder for an array of bundles containing multiple fiber optic strands provides a pattern of openings into which one each of each bundle is fit. The openings may (but need not) penetrate the full holder thickness to permit working with bundles from either bundle end. In one embodiment the holder thickness equals the bundle length, and the holder is sized similarly to a microscope slide. An alternative embodiment temporarily retains bundles in a desired registration and subjects the retained bundles to molten material such as wax that is allowed to harden around the bundles and become the holder. A modular holder comprises laminates that each contain parallel grooves sized to receive a bundle. A holder for a single bundle includes cooperating grip-like members, one of which is pivotably attached and biased toward the other member. A common form factor may be used for each holder type to facilitate retaining holders in a common docking station.
    Type: Grant
    Filed: May 19, 2000
    Date of Patent: May 28, 2002
    Assignee: Illumina, Inc.
    Inventors: John R. Stuelpnagel, Mark S. Chee, Richard J. Pytelewski, Todd Alan Dickinson, Gan G. Wang
  • Publication number: 20020051971
    Abstract: In accordance with the objects outlined above, the present invention provides microfluidic devices for the detection of a target analyte in a sample. The devices comprise a solid support that has any number of modules, including a a sample inlet port and at least one sample handling well comprising a well inlet port and a well outlet port. The device generally further comprises a first microchannel to allow fluid contact between the sample inlet port and the sample handling well. The device also comprises a detection module comprising a substrate with a surface comprising discrete sites, and a population of microspheres comprising at least a first and a second subpopulation, wherein each subpopulation comprises a bioactive agent. The microspheres are distributed on said surface. The detection module also comprises a detection inlet port to receive the sample. The device also comprises a second microchannel to allow fluid contact between the sample handling well and the detection inlet port.
    Type: Application
    Filed: May 21, 1999
    Publication date: May 2, 2002
    Inventors: JOHN R. STUELPNAGEL, MARK S. CHEE, KEVIN GUNDERSON