Patents by Inventor John Shanklin

John Shanklin has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20220204984
    Abstract: Compositions that are plants, seeds or crops that have a combination of defective BADC genes and genes for making hydroxy fatty acids produced normal levels of oil containing specialty fatty acids, and exhibited an increases in total oil accumulation, increase in absolute hydroxy (specialized) fatty acid accumulation per seed and/or per plant and/or per unit land area. Defective BADC genes and genes for synthesizing hydroxy fatty acids are combined to produce specialized fatty acids without substantially slowing production of endogenous fatty acids. Methods are also described for increasing production of unusual fatty acids and increasing total fatty acid levels in plants by a mechanism involving combining defective BADC genes and genes for making hydroxy fatty acids to produce steady or increased levels of oil containing the increased specialty products as described herein.
    Type: Application
    Filed: November 24, 2021
    Publication date: June 30, 2022
    Inventors: John Shanklin, Xioa-Hong Yu, Hui Liu, Jantana Keereetaweep, Yuanheng Cai
  • Publication number: 20210261632
    Abstract: The invention provides mutant or variant oleosin polypeptides having one or more amino acid substitutions, particularly one or more arginine substitution for lysine, and having one or more amino acid deletions. The mutant oleosin polypeptides provide for higher triacylglycerol compared to wild type oleosin, including when the mutant oleosin is expressed in plants. Also provided are polynucleotides encoding the mutant oleosin(s), constructs and host cells comprising the polynucleotides, methods for producing oil bodies comprising the mutant oleosin(s) and for producing oil in host cells and plants. The invention also relates to plants, particularly transgenic or recombinantly engineered plants, expressing one or more of the mutant oleosin polypeptides, as well as seeds and oil bodies derived from the plants.
    Type: Application
    Filed: February 19, 2021
    Publication date: August 26, 2021
    Inventors: John Shanklin, Sanket P. Anaokar
  • Publication number: 20210062163
    Abstract: The invention provides wild type stearoyl-ACP type desaturase, and its mutants, particularly T117R and D280K, for converting oleoyl-ACP, the normal product of the stearoyl-ACP desaturase, to a vicinal diol, erythro 9, 10 dihydroxy stearate. The invention provides mutant or variant stearoyl-ACP type desaturase polypeptides having one or more amino acid substitutions, particularly one or more substitution at amino acid 117 and/or amino acid 280, of the plastid enzyme polypeptide. The mutant polypeptides provide for higher vicinal diol, particularly 9, 10 dihydroxy stearate, compared to wild type stearoyl-acyl carrier protein (ACP) desaturase, including when the mutant stearoyl-ACP type desaturase is expressed in host cells. Also provided are polynucleotides encoding the mutant stearoyl-ACP type desaturase, constructs and host cells comprising the polynucleotides, methods for producing a vicinal diol, erythro 9, 10 dihydroxy stearate, in host cells.
    Type: Application
    Filed: August 28, 2020
    Publication date: March 4, 2021
    Inventors: John Shanklin, Edward J. Whittie
  • Patent number: 10351868
    Abstract: Heterologous expression of E. coli cyclopropane synthase in genotypic and phenotypic fad2fae1 plants facilitates accumulation of cyclopropane fatty acids. Co-expression of Sterculia foetida transferases, including lysophosphatidic acid acyltransferase, diacylglycerol acyltransferase (DGAT), and Phospholipid Diacyl Glycerol Acyltransferase (PDAT), with E. coli cyclopropane synthase further enhances cyclopropane fatty acid accumulation in fad2fae1 plant seeds.
    Type: Grant
    Filed: August 26, 2014
    Date of Patent: July 16, 2019
    Assignee: Brookhaven Science Associates, LLC
    Inventors: John Shanklin, Xiao-Hong Yu, Richa Rawat Prakash
  • Publication number: 20190144880
    Abstract: The invention provides combining certain genetic mutations in plants to increase sugar levels in the vegetative tissues of the plants. The specific combinations of mutations yield increased oil production in the vegetative tissues. In one embodiment, a plant comprises two mutations, wherein the two mutations are an adg1 mutation and a suc2 mutation. In one embodiment, a plant comprises three mutations, wherein the three mutations are an adg1 mutation, a suc2 mutation and a sdp1 mutation, or comprises an adg1 mutation, a suc2 mutation and a tt4 mutation. In one embodiment, the plant comprises four mutations, wherein the four mutations are an adg1 mutation, a suc2 mutation, an sdp1 mutation, and a tgd1 mutation, or comprises an adg1 mutation, a suc2 mutation, a tt4 mutation and a tgd1 mutation.
    Type: Application
    Filed: August 10, 2018
    Publication date: May 16, 2019
    Inventors: John Shanklin, Zhiyang Zhai
  • Patent number: 9976155
    Abstract: Compositions and methods include genetically encoding and expressing a novel ?9-18:0-ACP desaturase in plant cells. In some embodiments, nucleic acid molecules encode the novel ?9-18:0-ACP desaturase. In other embodiments, amino acid sequences have ?9-18:0-ACP desaturase activity. Methods can involve expression of ?9-18:0-ACP desaturase in plant cells, plant materials, and whole plants for the purpose of increasing the amount of unusual fatty acids in whole plants, plant seeds, and plant materials, for example, seeds.
    Type: Grant
    Filed: April 15, 2016
    Date of Patent: May 22, 2018
    Assignees: Dow AgroSciences LLC, Brookhaven Science Associates, LLC
    Inventors: John Shanklin, Tam Huu Nguyen, Terence A. Walsh, Mark S. Pidkowich, Edward J. Whittle
  • Patent number: 9957514
    Abstract: The present disclosure provides methods and compositions for genetic transformation of Lemnaceae species.
    Type: Grant
    Filed: August 21, 2014
    Date of Patent: May 1, 2018
    Assignees: Cold Spring Harbor Laboratory, Brookhaven Science Associates, LLC
    Inventors: Rob Martienssen, Almudena Molla-Morales, Alex Cantó-Pastor, Evan Ernst, John Shanklin, Yiheng Yan
  • Patent number: 9850291
    Abstract: The present invention discloses a novel gene encoding a transporter protein trigalactosyldiacylglycerol-5 (TGD5), mutations thereof and their use to enhance TAG production and retention in plant vegetative tissue.
    Type: Grant
    Filed: May 22, 2015
    Date of Patent: December 26, 2017
    Assignee: Brookhaven Science Associates, LLC
    Inventors: Changcheng Xu, Jilian Fan, Chengshi Yan, John Shanklin
  • Patent number: 9593344
    Abstract: In the tgd1-1 mutant that displays substantially enhanced TAG synthesis and turnover, disruption of SUGAR-DEPENDENT1 (SDP1) TAG lipase or PEROXISOMAL TRANSPORTER1 (PXA1) severely decreases FA turnover, leading to an increase in leaf TAG content up to 9% of dry weight and total leaf lipid by three-fold. The membrane lipid content and composition of tgd1-1 sdp1-4 and tgd1-1 pxa1-2 double mutants are altered and they are compromised in growth and development and fertility.
    Type: Grant
    Filed: July 2, 2015
    Date of Patent: March 14, 2017
    Assignee: Brookhaven Science Associates, LLC
    Inventors: Changcheng Xu, Jilian Fan, Chengshi Yan, John Shanklin
  • Publication number: 20160272986
    Abstract: Compositions and methods include genetically encoding and expressing a novel ?9-18:0-ACP desaturase in plant cells. In some embodiments, nucleic acid molecules encode the novel ?9-18:0-ACP desaturase. In other embodiments, amino acid sequences have ?9-18:0-ACP desaturase activity. Methods can involve expression of ?9-18:0-ACP desaturase in plant cells, plant materials, and whole plants for the purpose of increasing the amount of unusual fatty acids in whole plants, plant seeds, and plant materials, for example, seeds.
    Type: Application
    Filed: April 15, 2016
    Publication date: September 22, 2016
    Inventors: John Shanklin, Tam Huu Nguyen, Terence A. Walsh, Mark S. Pidkowich, Edward J. Whittle
  • Publication number: 20160222398
    Abstract: Heterologous expression of E. coli cyclopropane synthase in genotypic and phenotypic fad2fae1 plants facilitates accumulation of cyclopropane fatty acids. Co-expression of Sterculia foetida transferases, including lysophosphatidic acid acyltransferase, diacylglycerol acyltransferase (DGAT), and Phospholipid Diacyl Glycerol Acyltransferase (PDAT), with E. coli cyclopropane synthase further enhances cyclopropane fatty acid accumulation in fad2fae1 plant seeds.
    Type: Application
    Filed: August 26, 2014
    Publication date: August 4, 2016
    Applicant: Brookhaven Science Associates, LLC
    Inventors: John Shanklin, Xiao-Hong Yu, Richa Rawat Prakash
  • Publication number: 20160201069
    Abstract: The present disclosure provides methods and compositions for genetic transformation of Lemnaceae species.
    Type: Application
    Filed: August 21, 2014
    Publication date: July 14, 2016
    Applicants: Cold Spring Harbor Laboratory, Brookhaven Science Associates, LLC
    Inventors: Rob Martienssen, Almudena Molla-Morales, Cantó Pastor Alex, Evan Ernst, John Shanklin, Yihen Yan
  • Patent number: 9340776
    Abstract: Compositions and methods include genetically encoding and expressing a novel ?9-18:0-ACP desaturase in plant cells. In some embodiments, nucleic acid molecules encode the novel ?9-18:0-ACP desaturase. In other embodiments, amino acid sequences have ?9-18:0-ACP desaturase activity. Methods can involve expression of ?9-18:0-ACP desaturase in plant cells, plant materials, and whole plants for the purpose of increasing the amount of unusual fatty acids in whole plants, plant seeds, and plant materials, for example, seeds.
    Type: Grant
    Filed: June 24, 2011
    Date of Patent: May 17, 2016
    Assignees: Dow AgroSciences LLC, Brookhaven Science Associates, LLC
    Inventors: John Shanklin, Tam Huu Nguyen, Terence A. Walsh, Mark S. Pidkowich, Edward J. Whittle
  • Publication number: 20160002651
    Abstract: In the tgd1-1 mutant that displays substantially enhanced TAG synthesis and turnover, disruption of SUGAR-DEPENDENT1 (SDP1) TAG lipase or PEROXISOMAL TRANSPORTER1 (PXA1) severely decreases FA turnover, leading to an increase in leaf TAG content up to 9% of dry weight and total leaf lipid by three-fold. The membrane lipid content and composition of tgd1-1 sdp1-4 and tgd1-1 pxa1-2 double mutants are altered and they are compromised in growth and development and fertility.
    Type: Application
    Filed: July 2, 2015
    Publication date: January 7, 2016
    Applicant: Brookhaven Science Associates, LLC
    Inventors: Changcheng Xu, Jilian Fan, Chengshi Yan, John Shanklin
  • Publication number: 20150337017
    Abstract: The present invention discloses a novel gene encoding a transporter protein trigalactosyldiacylglycerol-5 (TGD5), mutations thereof and their use to enhance TAG production and retention in plant vegetative tissue.
    Type: Application
    Filed: May 22, 2015
    Publication date: November 26, 2015
    Inventors: Changcheng Xu, Jilian Fan, Chengshi Yan, John Shanklin
  • Patent number: 9193972
    Abstract: A nucleotide construct comprising a nucleotide sequence that forms a stem and a loop, wherein the loop comprises a nucleotide sequence that modulates expression of a target, wherein the stem comprises a nucleotide sequence that modulates expression of a target, and wherein the target modulated by the nucleotide sequence in the loop and the target modulated by the nucleotide sequence in the stem may be the same or different. Vectors, methods of regulating target expression, methods of providing a cell, and methods of treating conditions comprising the nucleotide sequence are also disclosed.
    Type: Grant
    Filed: August 5, 2014
    Date of Patent: November 24, 2015
    Assignee: Brookhaven Science Associates, LLC
    Inventors: John Shanklin, Tam Huu Nguyen
  • Publication number: 20140370563
    Abstract: The present invention is related to compositions and methods for enhanced synthesis of hydrocarbons, particularly, but not limited to, alkanes. The invention, in one embodiment, utilizes the co-expression of a hydrogen peroxide metabolizing enzyme in the presence of an aldehyde decarbonylase enzyme to relieve hydrogen peroxide inhibition of the aldehyde decarbonylase enzyme by hydrogen peroxide. In a preferred embodiment a catalase-aldehyde decarbonylase expression construct and fusion peptide is used. The present invention also relates to microorganisms engineered to express said enzymes and to produce hydrocarbon molecules.
    Type: Application
    Filed: August 24, 2012
    Publication date: December 18, 2014
    Applicant: BROOKHAVEN SCIENCE ASSOCIATES, LLC
    Inventors: John Shanklin, Carl Andre
  • Publication number: 20140342453
    Abstract: A nucleotide construct comprising a nucleotide sequence that forms a stem and a loop, wherein the loop comprises a nucleotide sequence that modulates expression of a target, wherein the stem comprises a nucleotide sequence that modulates expression of a target, and wherein the target modulated by the nucleotide sequence in the loop and the target modulated by the nucleotide sequence in the stem may be the same or different. Vectors, methods of regulating target expression, methods of providing a cell, and methods of treating conditions comprising the nucleotide sequence are also disclosed.
    Type: Application
    Filed: August 5, 2014
    Publication date: November 20, 2014
    Inventors: John Shanklin, Tam Huu Nguyen
  • Publication number: 20140230091
    Abstract: Methods and means are provided to increase the oil content of plants, particularly oleaginous plants by preventing feedback inhibition by 18:1-Coenzyme A or 18:1-Acyl Carrier Protein of the acetyl CoA-carboxylase enzyme in cells of these plants in various manners.
    Type: Application
    Filed: June 28, 2012
    Publication date: August 14, 2014
    Applicant: BROOKHAVEN SCIENCE ASSOCIATES, LLC
    Inventors: John Shanklin, Carl Andre
  • Patent number: 8796442
    Abstract: A nucleotide construct comprising a nucleotide sequence that forms a stem and a loop, wherein the loop comprises a nucleotide sequence that modulates expression of a target, wherein the stem comprises a nucleotide sequence that modulates expression of a target, and wherein the target modulated by the nucleotide sequence in the loop and the target modulated by the nucleotide sequence in the stem may be the same or different. Vectors, methods of regulating target expression, methods of providing a cell, and methods of treating conditions comprising the nucleotide sequence are also disclosed.
    Type: Grant
    Filed: March 20, 2008
    Date of Patent: August 5, 2014
    Assignee: Brookhaven Science Associates, LLC.
    Inventors: John Shanklin, Tam Nguyen