Patents by Inventor Johnny Israeli

Johnny Israeli has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230245718
    Abstract: The present invention provides methods, systems, computer program products that use deep learning with neural networks to denoise ATAC-seq datasets. The methods, systems, and programs provide for increased efficiency, accuracy, and speed in identifying genomic sites of chromatin accessibility in a wide range of tissue and cell types.
    Type: Application
    Filed: April 11, 2023
    Publication date: August 3, 2023
    Applicant: NVIDIA Corporation
    Inventors: Johnny ISRAELI, Nikolai YAKOVENKO
  • Patent number: 11657897
    Abstract: The present invention provides methods, systems, computer program products that use deep learning with neural networks to denoise ATAC-seq datasets. The methods, systems, and programs provide for increased efficiency, accuracy, and speed in identifying genomic sites of chromatin accessibility in a wide range of tissue and cell types.
    Type: Grant
    Filed: December 31, 2018
    Date of Patent: May 23, 2023
    Assignee: NVIDIA Corporation
    Inventors: Johnny Israeli, Nikolai Yakovenko
  • Patent number: 11443832
    Abstract: The present disclosure provides methods, systems, and computer program products that use deep learning models to classify candidate mutations detected in sequencing data, particularly suboptimal sequencing data. The methods, systems, and programs provide for increased efficiency, accuracy, and speed in identifying mutations from a wide range of sequencing data.
    Type: Grant
    Filed: March 7, 2019
    Date of Patent: September 13, 2022
    Assignee: NVIDIA Corporation
    Inventors: Johnny Israeli, Avantika Lal, Michael Vella, Nikolai Yakovenko, Zhen Hu
  • Publication number: 20200365234
    Abstract: The present disclosure provides methods, systems, and computer program products that use embeddings of candidate variation information and deep learning models to accurately and efficiently detect variations in biopolymer sequencing data, particularly suboptimal sequencing data.
    Type: Application
    Filed: May 13, 2019
    Publication date: November 19, 2020
    Applicant: NVIDIA Corporation
    Inventors: Nikolai YAKOVENKO, Johnny ISRAELI, Avantika LAL, Michael VELLA, Zhen HU
  • Publication number: 20200286587
    Abstract: The present disclosure provides methods, systems, and computer program products that use deep learning models to classify candidate mutations detected in sequencing data, particularly suboptimal sequencing data. The methods, systems, and programs provide for increased efficiency, accuracy, and speed in identifying mutations from a wide range of sequencing data.
    Type: Application
    Filed: March 7, 2019
    Publication date: September 10, 2020
    Applicant: NVIDIA Corporation
    Inventors: Johnny ISRAELI, Avantika LAL, Michael VELLA, Nikolai YAKOVENKO, Zhen HU
  • Publication number: 20200211674
    Abstract: The present invention provides methods, systems, computer program products that use deep learning with neural networks to denoise ATAC-seq datasets. The methods, systems, and programs provide for increased efficiency, accuracy, and speed in identifying genomic sites of chromatin accessibility in a wide range of tissue and cell types.
    Type: Application
    Filed: December 31, 2018
    Publication date: July 2, 2020
    Applicant: NVIDIA Corporation
    Inventors: Johnny ISRAELI, Nikolai YAKOVENKO
  • Publication number: 20200027210
    Abstract: In various examples, a virtualized computing platform for advanced computing operations—including image reconstruction, segmentation, processing, analysis, visualization, and deep learning—may be provided. The platform may allow for inference pipeline customization by selecting, organizing, and adapting constructs of task containers for local, on-premises implementation. Within the task containers, machine learning models generated off-premises may be leveraged and updated for location specific implementation to perform image processing operations. As a result, and using the virtualized computing platform, facilities such as hospitals and clinics may more seamlessly train, deploy, and integrate machine learning models within a production environment for providing informative and actionable medical information to practitioners.
    Type: Application
    Filed: July 18, 2019
    Publication date: January 23, 2020
    Inventors: Nicholas Haemel, Bojan Vukojevic, Risto Haukioja, Andrew Feng, Yan Cheng, Sachidanand Alle, Daguang Xu, Holger Reinhard Roth, Johnny Israeli