Patents by Inventor Jon Clardy
Jon Clardy has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).
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Patent number: 11124498Abstract: Disclosed herein, inter alia, are compositions for modulating protease activity and treating cancer.Type: GrantFiled: November 15, 2017Date of Patent: September 21, 2021Assignees: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA, MASSACHUSETTS INSTITUTE OF TECHNOLOGY, PRESIDENT AND FELLOWS OF HARVARD COLLEGEInventors: Michael A. Fischbach, Chun-Jun Guo, Christopher A. Voigt, Fang-Yuan Chang, Jon Clardy, Thomas Wyche
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Patent number: 10793590Abstract: Compounds of formula (I) or formula (II), compositions and methods useful for treating and/or preventing a fungal infections are provided. wherein the substituents are as defined in the appended claims.Type: GrantFiled: June 2, 2017Date of Patent: October 6, 2020Assignees: President and Fellows of Harvard College, Wisconsin Alumni Research Foundation, Universidad de Costa RicaInventors: Ethan Van Arnam, Clarissa Sit, Antonio Ruzzini, Jon Clardy, Cameron Currie, Adrian Alberto Pinto-Tomas
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Publication number: 20200048227Abstract: Disclosed herein, inter alia, are compositions for modulating protease activity and treating cancer.Type: ApplicationFiled: November 15, 2017Publication date: February 13, 2020Inventors: Michael A. Fischbach, Chun-Jun Guo, Christopher A. Voigt, Fang-Yuan Chang, Jon Clardy, Thomas Wyche
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Patent number: 10227290Abstract: Provided herein are sphingolipid compounds that are useful for activating natural killer T cells. Also provided are methods for treating or preventing a disease or disorder that is treatable by activating the immune system by stimulating natural killer T cells. The compounds are therefore useful for treating or reducing the likelihood of occurrence of an immune diseases and disorders, such as autoimmune diseases or disorders. The compounds may also be used for treating or reducing the likelihood of occurrence of a microbial infection or for treating or reducing the likelihood of occurrence of a cancer in a subject by administering the sphingolipid compounds described herein.Type: GrantFiled: February 7, 2013Date of Patent: March 12, 2019Assignees: The Regents of the University of California, President and Fellows of Harvard CollegeInventors: Michael A. Fischbach, Jeffrey A. Bluestone, Cristina Penaranda, Laura Brown, Jon Clardy
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Publication number: 20160331719Abstract: Provided herein are pure and isolated natural products and analogs thereof of Formula (I), (II), (III), and (IV), pharmaceutical compositions thereof, and methods of use, for example, for treating a bacterial infection. Further provided are methods useful in identifying an inhibitor of bacterial sugar fermentation in a bacterial strain, such as a compound (inhibitor) of Formula (I), (II), (III), or (IV): or a pharmaceutically acceptable salt thereof.Type: ApplicationFiled: April 22, 2016Publication date: November 17, 2016Applicants: Children's Medical Center Corporation, President and Fellows of Harvard CollegeInventors: Paula I. Watnick, Patrick Ymele-Leki, Jon Clardy, Shugeng Cao
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Patent number: 9359275Abstract: Provided herein are pure and isolated natural products and analogs thereof of Formula (I), (II), (III), and (IV), pharmaceutical compositions thereof, and methods of use, for example, for treating a bacterial infection. Further provided are methods useful in identifying an inhibitor of bacterial sugar fermentation in a bacterial strain, such as a compound (inhibitor) of Formula (I), (II), (III), or (IV): or a pharmaceutically acceptable salt thereof.Type: GrantFiled: February 25, 2013Date of Patent: June 7, 2016Assignees: Children's Medical Center Corporation, President and Fellows of Harvard CollegeInventors: Paula I. Watnick, Patrick Ymele-Leki, Jon Clardy, Shugeng Cao
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Publication number: 20160115145Abstract: Embodiments of the invention relate to compounds and methods for controlling algal growth, for example, in bodies of water or surfaces exposed to algae. Provided are compounds having algicidal activities and methods of use of these compounds as well as formulations and compositions comprising the compound having algicidal activities.Type: ApplicationFiled: September 9, 2015Publication date: April 28, 2016Applicant: PRESIDENT AND FELLOWS OF HARVARD COLLEGEInventors: Roberto Kolter, Rebecca Case, Jon Clardy, Mohammad Seyedsayamdost
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Patent number: 9131687Abstract: Embodiments of the invention relate to compounds and methods for controlling algal growth, for example, in bodies of water or surfaces exposed to algae. Provided are compounds having algicidal activities and methods of use of these compounds as well as formulations and compositions comprising the compound having algicidal activities.Type: GrantFiled: August 22, 2011Date of Patent: September 15, 2015Assignee: PRESIDENT AND FELLOWS OF HARVARD COLLEGEInventors: Roberto Kolter, Rebecca Case, Jon Clardy, Mohammad Seyedsayamdost
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Publication number: 20140377291Abstract: Provided herein are sphingolipid compounds that are useful for activating natural killer T cells. Also provided are methods for treating or preventing a disease or disorder that is treatable by activating the immune system by stimulating natural killer T cells. The compounds are therefore useful for treating or reducing the likelihood of occurrence of an immune diseases and disorders, such as autoimmune diseases or disorders. The compounds may also be used for treating or reducing the likelihood of occurrence of a microbial infection or for treating or reducing the likelihood of occurrence of a cancer in a subject by administering the sphingolipid compounds described herein.Type: ApplicationFiled: February 7, 2013Publication date: December 25, 2014Inventors: Michael A. Fischbach, Jeffrey A. Bluestone, Cristina Penaranda, Laura Brown, Jon Clardy
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Publication number: 20140199372Abstract: Disclosed are methods of cultivating or isolating a microorganism using one or more quinones as growth factors. Also disclosed are methods of treating a mammalian species with deficiency in symbionts using such compounds.Type: ApplicationFiled: May 24, 2012Publication date: July 17, 2014Applicant: NORTHEASTERN UNIVERSITYInventors: Kim Lewis, Pallavi Murugkar, Anthony D'onofrio, Eric Stewart, Eric Dimise, Jon Clardy, Kathrin Witt, Bijaya Sharma
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Publication number: 20140056951Abstract: Methods of treating or reducing biofilms, treating a biofilm-related disorder, and preventing biofilm formation using polyamines is described.Type: ApplicationFiled: November 4, 2013Publication date: February 27, 2014Applicant: PRESIDENT AND FELLOWS OF HARVARD COLLEGEInventors: Richard LOSICK, Illana KOLODKIN-GAL, Jon CLARDY, Shugeng CAO, Matt CABEEN, Roberto KOLTER, Liraz CHAI, Thomas BÖTTCHER
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Publication number: 20140056952Abstract: Methods of treating or reducing biofilms, treating a biofilm-related disorder, and preventing biofilm formation using polyamines is described.Type: ApplicationFiled: November 4, 2013Publication date: February 27, 2014Applicant: President and Fellows of Harvard CollegeInventors: Richard LOSICK, Illana KOLODKIN-GAL, Jon CLARDY, Shugeng CAO, Matt CABEEN, Roberto KOLTER, Liraz CHAI, Thomas BÖTTCHER
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Publication number: 20130317094Abstract: Described herein are materials and methods for the inhibition of bacterial QS. Methods of treating bacterial infections by administration of one or more ellagitannins in amount effective to inhibit bacterial QS is also provided.Type: ApplicationFiled: May 14, 2013Publication date: November 28, 2013Applicant: THE FLORIDA INTERNATIONAL UNIVERSITY BOARD OF TRUSTEESInventors: Kalai Mathee, Allison L. Adonizio, Frederick Ausubel, Jon Clardy, Bradley Bennett, Kelsey Downum
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Publication number: 20130252815Abstract: Embodiments of the invention relate to compounds and methods for controlling algal growth, for example, in bodies of water or surfaces exposed to algae. Provided are compounds having algicidal activities and methods of use of these compounds as well as formulations and compositions comprising the compound having algicidal activities.Type: ApplicationFiled: August 22, 2011Publication date: September 26, 2013Applicant: PRESIDENT AND FELLOWS OF HARVARD COLLEGEInventors: Roberto Kolter, Rebecca Case, Jon Clardy, Mohammad Seyedsayamdost
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Publication number: 20130245130Abstract: Provided herein are pure and isolated natural products and analogs thereof of Formula (I), (II), (III), and (IV), pharmaceutical compositions thereof, and methods of use, for example, for treating a bacterial infection. Further provided are methods useful in identifying an inhibitor of bacterial sugar fermentation in a bacterial strain, such as a compound (inhibitor) of Formula (I), (II), (III), or (IV): or a pharmaceutically acceptable salt thereof.Type: ApplicationFiled: February 25, 2013Publication date: September 19, 2013Applicants: President and Fellows of Harvard College, Children's Medical Center CorporationInventors: Paula I. Watnick, Patrick Ymele-Leki, Jon Clardy, Shugeng Cao
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Publication number: 20130071439Abstract: Methods of treating or reducing biofilms, treating a biofilm-related disorder, and preventing biofilm formation using D-amino acids are described.Type: ApplicationFiled: January 10, 2011Publication date: March 21, 2013Applicant: PRESIDENT AND FELLOWS OF HARVARD COLLEGEInventors: Richard Losick, Jon Clardy, Roberto Kolter, Illana Kolodkin-Gal, Diego Romero, Shugeng Cao
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Publication number: 20130059096Abstract: A method of treating, reducing, or inhibiting biofilm formation by bacteria, the method comprising: contacting an article with a composition comprising an effective amount of a D-amino acid, said composition being essentially free of the corresponding L-amino acid, thereby treating, reducing or inhibiting formation of the biofilm, wherein the D-amino acid is selected from the group consisting of D-alanine, D-cysteine, D-aspartic acid, D-glutamic acid, D-histidine, D-isoleucine, D-lysine, D-leucine, D-asparagine, D-proline, D-glutamine, D-arginine, D-serine, D-threonine, D-valine, D-tryptophan, D-tyrosine, and a combination thereof.Type: ApplicationFiled: January 10, 2011Publication date: March 7, 2013Applicant: President and Fellows of Harvard CollegeInventors: Richard Losick, Jon Clardy, Roberto Kolter, Illana Kolodkin-Gal, Diego Romero, Shugeng Cao
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Patent number: 8222434Abstract: The present inventions are directed to a novel bactobolin analog bactobolin D. The present inventions also are directed to a method of producing a composition comprising at least one bactobolin analog using a bacteria strain comprising a bacterial cell comprising the biosynthetic locus of the bactobolin analog in Burkholderia thailandensis (bta cluster) or a homolog structure (at least 95% sequence identity) thereof, and further isolation and purification of the bactobolin analog. For example, the bacterial strain can be a wild type bacterial strain such as a Burkholderia strain comprising a bta cluster (e.g. Burkholderia thailandensis (e.g. E264, Bt4, and TXDOH) and Burkholderia pseudomallei (e.g. K96243, 1106a, and 1106b).Type: GrantFiled: April 5, 2010Date of Patent: July 17, 2012Assignees: University of Washington through its Center for Commercialization, President and Fellows of Harvard CollegeInventors: E. Peter Greenberg, Josephine R. Chandler, Breck Duerkop, Patricia Silva Lima, Joshua Alan Blodgett, Jon Clardy, Mohammad R. Seyedsayamdost
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Publication number: 20110105421Abstract: Described herein are materials and methods for the inhibition of bacterial QS. Methods of treating bacterial infections by administration of one or more ellagitannins in amount effective to inhibit bacterial QS is also provided.Type: ApplicationFiled: March 13, 2009Publication date: May 5, 2011Applicant: The Florida International University Board of TrusteesInventors: Kalai Mathee, Allison L. Adonizio, Frederick Ausubel, Jon Clardy, Bradley Bennett, Kelsey Downum
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Publication number: 20040259176Abstract: The present invention relates to methods of facilitating death of cancer cells in a subject by inhibiting tissue transglutaminase in the subject under conditions effective to facilitate death of cancer cells. Also disclosed are methods for identifying candidate compounds suitable for facilitating death of cancer cells in a subject by contacting tissue transglutaminase with a compound and identifying those compounds which bind to the tissue transglutaminase as candidate compounds suitable for facilitating death of cancer cells in a subject. The present invention also discloses methods of producing a tissue transglutaminase crystal suitable for X-ray diffraction as well as crystals produced by such methods. Also disclosed are compounds suitable for facilitating death of cancer cells in a subject as well as methods for designing such compounds.Type: ApplicationFiled: February 24, 2004Publication date: December 23, 2004Inventors: Richard A. Cerione, Jon Clardy, Shenping Liu