Patents by Inventor Jon Clardy

Jon Clardy has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 11124498
    Abstract: Disclosed herein, inter alia, are compositions for modulating protease activity and treating cancer.
    Type: Grant
    Filed: November 15, 2017
    Date of Patent: September 21, 2021
    Assignees: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA, MASSACHUSETTS INSTITUTE OF TECHNOLOGY, PRESIDENT AND FELLOWS OF HARVARD COLLEGE
    Inventors: Michael A. Fischbach, Chun-Jun Guo, Christopher A. Voigt, Fang-Yuan Chang, Jon Clardy, Thomas Wyche
  • Patent number: 10793590
    Abstract: Compounds of formula (I) or formula (II), compositions and methods useful for treating and/or preventing a fungal infections are provided. wherein the substituents are as defined in the appended claims.
    Type: Grant
    Filed: June 2, 2017
    Date of Patent: October 6, 2020
    Assignees: President and Fellows of Harvard College, Wisconsin Alumni Research Foundation, Universidad de Costa Rica
    Inventors: Ethan Van Arnam, Clarissa Sit, Antonio Ruzzini, Jon Clardy, Cameron Currie, Adrian Alberto Pinto-Tomas
  • Publication number: 20200048227
    Abstract: Disclosed herein, inter alia, are compositions for modulating protease activity and treating cancer.
    Type: Application
    Filed: November 15, 2017
    Publication date: February 13, 2020
    Inventors: Michael A. Fischbach, Chun-Jun Guo, Christopher A. Voigt, Fang-Yuan Chang, Jon Clardy, Thomas Wyche
  • Patent number: 10227290
    Abstract: Provided herein are sphingolipid compounds that are useful for activating natural killer T cells. Also provided are methods for treating or preventing a disease or disorder that is treatable by activating the immune system by stimulating natural killer T cells. The compounds are therefore useful for treating or reducing the likelihood of occurrence of an immune diseases and disorders, such as autoimmune diseases or disorders. The compounds may also be used for treating or reducing the likelihood of occurrence of a microbial infection or for treating or reducing the likelihood of occurrence of a cancer in a subject by administering the sphingolipid compounds described herein.
    Type: Grant
    Filed: February 7, 2013
    Date of Patent: March 12, 2019
    Assignees: The Regents of the University of California, President and Fellows of Harvard College
    Inventors: Michael A. Fischbach, Jeffrey A. Bluestone, Cristina Penaranda, Laura Brown, Jon Clardy
  • Publication number: 20160331719
    Abstract: Provided herein are pure and isolated natural products and analogs thereof of Formula (I), (II), (III), and (IV), pharmaceutical compositions thereof, and methods of use, for example, for treating a bacterial infection. Further provided are methods useful in identifying an inhibitor of bacterial sugar fermentation in a bacterial strain, such as a compound (inhibitor) of Formula (I), (II), (III), or (IV): or a pharmaceutically acceptable salt thereof.
    Type: Application
    Filed: April 22, 2016
    Publication date: November 17, 2016
    Applicants: Children's Medical Center Corporation, President and Fellows of Harvard College
    Inventors: Paula I. Watnick, Patrick Ymele-Leki, Jon Clardy, Shugeng Cao
  • Patent number: 9359275
    Abstract: Provided herein are pure and isolated natural products and analogs thereof of Formula (I), (II), (III), and (IV), pharmaceutical compositions thereof, and methods of use, for example, for treating a bacterial infection. Further provided are methods useful in identifying an inhibitor of bacterial sugar fermentation in a bacterial strain, such as a compound (inhibitor) of Formula (I), (II), (III), or (IV): or a pharmaceutically acceptable salt thereof.
    Type: Grant
    Filed: February 25, 2013
    Date of Patent: June 7, 2016
    Assignees: Children's Medical Center Corporation, President and Fellows of Harvard College
    Inventors: Paula I. Watnick, Patrick Ymele-Leki, Jon Clardy, Shugeng Cao
  • Publication number: 20160115145
    Abstract: Embodiments of the invention relate to compounds and methods for controlling algal growth, for example, in bodies of water or surfaces exposed to algae. Provided are compounds having algicidal activities and methods of use of these compounds as well as formulations and compositions comprising the compound having algicidal activities.
    Type: Application
    Filed: September 9, 2015
    Publication date: April 28, 2016
    Applicant: PRESIDENT AND FELLOWS OF HARVARD COLLEGE
    Inventors: Roberto Kolter, Rebecca Case, Jon Clardy, Mohammad Seyedsayamdost
  • Patent number: 9131687
    Abstract: Embodiments of the invention relate to compounds and methods for controlling algal growth, for example, in bodies of water or surfaces exposed to algae. Provided are compounds having algicidal activities and methods of use of these compounds as well as formulations and compositions comprising the compound having algicidal activities.
    Type: Grant
    Filed: August 22, 2011
    Date of Patent: September 15, 2015
    Assignee: PRESIDENT AND FELLOWS OF HARVARD COLLEGE
    Inventors: Roberto Kolter, Rebecca Case, Jon Clardy, Mohammad Seyedsayamdost
  • Publication number: 20140377291
    Abstract: Provided herein are sphingolipid compounds that are useful for activating natural killer T cells. Also provided are methods for treating or preventing a disease or disorder that is treatable by activating the immune system by stimulating natural killer T cells. The compounds are therefore useful for treating or reducing the likelihood of occurrence of an immune diseases and disorders, such as autoimmune diseases or disorders. The compounds may also be used for treating or reducing the likelihood of occurrence of a microbial infection or for treating or reducing the likelihood of occurrence of a cancer in a subject by administering the sphingolipid compounds described herein.
    Type: Application
    Filed: February 7, 2013
    Publication date: December 25, 2014
    Inventors: Michael A. Fischbach, Jeffrey A. Bluestone, Cristina Penaranda, Laura Brown, Jon Clardy
  • Publication number: 20140199372
    Abstract: Disclosed are methods of cultivating or isolating a microorganism using one or more quinones as growth factors. Also disclosed are methods of treating a mammalian species with deficiency in symbionts using such compounds.
    Type: Application
    Filed: May 24, 2012
    Publication date: July 17, 2014
    Applicant: NORTHEASTERN UNIVERSITY
    Inventors: Kim Lewis, Pallavi Murugkar, Anthony D'onofrio, Eric Stewart, Eric Dimise, Jon Clardy, Kathrin Witt, Bijaya Sharma
  • Publication number: 20140056951
    Abstract: Methods of treating or reducing biofilms, treating a biofilm-related disorder, and preventing biofilm formation using polyamines is described.
    Type: Application
    Filed: November 4, 2013
    Publication date: February 27, 2014
    Applicant: PRESIDENT AND FELLOWS OF HARVARD COLLEGE
    Inventors: Richard LOSICK, Illana KOLODKIN-GAL, Jon CLARDY, Shugeng CAO, Matt CABEEN, Roberto KOLTER, Liraz CHAI, Thomas BÖTTCHER
  • Publication number: 20140056952
    Abstract: Methods of treating or reducing biofilms, treating a biofilm-related disorder, and preventing biofilm formation using polyamines is described.
    Type: Application
    Filed: November 4, 2013
    Publication date: February 27, 2014
    Applicant: President and Fellows of Harvard College
    Inventors: Richard LOSICK, Illana KOLODKIN-GAL, Jon CLARDY, Shugeng CAO, Matt CABEEN, Roberto KOLTER, Liraz CHAI, Thomas BÖTTCHER
  • Publication number: 20130317094
    Abstract: Described herein are materials and methods for the inhibition of bacterial QS. Methods of treating bacterial infections by administration of one or more ellagitannins in amount effective to inhibit bacterial QS is also provided.
    Type: Application
    Filed: May 14, 2013
    Publication date: November 28, 2013
    Applicant: THE FLORIDA INTERNATIONAL UNIVERSITY BOARD OF TRUSTEES
    Inventors: Kalai Mathee, Allison L. Adonizio, Frederick Ausubel, Jon Clardy, Bradley Bennett, Kelsey Downum
  • Publication number: 20130252815
    Abstract: Embodiments of the invention relate to compounds and methods for controlling algal growth, for example, in bodies of water or surfaces exposed to algae. Provided are compounds having algicidal activities and methods of use of these compounds as well as formulations and compositions comprising the compound having algicidal activities.
    Type: Application
    Filed: August 22, 2011
    Publication date: September 26, 2013
    Applicant: PRESIDENT AND FELLOWS OF HARVARD COLLEGE
    Inventors: Roberto Kolter, Rebecca Case, Jon Clardy, Mohammad Seyedsayamdost
  • Publication number: 20130245130
    Abstract: Provided herein are pure and isolated natural products and analogs thereof of Formula (I), (II), (III), and (IV), pharmaceutical compositions thereof, and methods of use, for example, for treating a bacterial infection. Further provided are methods useful in identifying an inhibitor of bacterial sugar fermentation in a bacterial strain, such as a compound (inhibitor) of Formula (I), (II), (III), or (IV): or a pharmaceutically acceptable salt thereof.
    Type: Application
    Filed: February 25, 2013
    Publication date: September 19, 2013
    Applicants: President and Fellows of Harvard College, Children's Medical Center Corporation
    Inventors: Paula I. Watnick, Patrick Ymele-Leki, Jon Clardy, Shugeng Cao
  • Publication number: 20130071439
    Abstract: Methods of treating or reducing biofilms, treating a biofilm-related disorder, and preventing biofilm formation using D-amino acids are described.
    Type: Application
    Filed: January 10, 2011
    Publication date: March 21, 2013
    Applicant: PRESIDENT AND FELLOWS OF HARVARD COLLEGE
    Inventors: Richard Losick, Jon Clardy, Roberto Kolter, Illana Kolodkin-Gal, Diego Romero, Shugeng Cao
  • Publication number: 20130059096
    Abstract: A method of treating, reducing, or inhibiting biofilm formation by bacteria, the method comprising: contacting an article with a composition comprising an effective amount of a D-amino acid, said composition being essentially free of the corresponding L-amino acid, thereby treating, reducing or inhibiting formation of the biofilm, wherein the D-amino acid is selected from the group consisting of D-alanine, D-cysteine, D-aspartic acid, D-glutamic acid, D-histidine, D-isoleucine, D-lysine, D-leucine, D-asparagine, D-proline, D-glutamine, D-arginine, D-serine, D-threonine, D-valine, D-tryptophan, D-tyrosine, and a combination thereof.
    Type: Application
    Filed: January 10, 2011
    Publication date: March 7, 2013
    Applicant: President and Fellows of Harvard College
    Inventors: Richard Losick, Jon Clardy, Roberto Kolter, Illana Kolodkin-Gal, Diego Romero, Shugeng Cao
  • Patent number: 8222434
    Abstract: The present inventions are directed to a novel bactobolin analog bactobolin D. The present inventions also are directed to a method of producing a composition comprising at least one bactobolin analog using a bacteria strain comprising a bacterial cell comprising the biosynthetic locus of the bactobolin analog in Burkholderia thailandensis (bta cluster) or a homolog structure (at least 95% sequence identity) thereof, and further isolation and purification of the bactobolin analog. For example, the bacterial strain can be a wild type bacterial strain such as a Burkholderia strain comprising a bta cluster (e.g. Burkholderia thailandensis (e.g. E264, Bt4, and TXDOH) and Burkholderia pseudomallei (e.g. K96243, 1106a, and 1106b).
    Type: Grant
    Filed: April 5, 2010
    Date of Patent: July 17, 2012
    Assignees: University of Washington through its Center for Commercialization, President and Fellows of Harvard College
    Inventors: E. Peter Greenberg, Josephine R. Chandler, Breck Duerkop, Patricia Silva Lima, Joshua Alan Blodgett, Jon Clardy, Mohammad R. Seyedsayamdost
  • Publication number: 20110105421
    Abstract: Described herein are materials and methods for the inhibition of bacterial QS. Methods of treating bacterial infections by administration of one or more ellagitannins in amount effective to inhibit bacterial QS is also provided.
    Type: Application
    Filed: March 13, 2009
    Publication date: May 5, 2011
    Applicant: The Florida International University Board of Trustees
    Inventors: Kalai Mathee, Allison L. Adonizio, Frederick Ausubel, Jon Clardy, Bradley Bennett, Kelsey Downum
  • Publication number: 20040259176
    Abstract: The present invention relates to methods of facilitating death of cancer cells in a subject by inhibiting tissue transglutaminase in the subject under conditions effective to facilitate death of cancer cells. Also disclosed are methods for identifying candidate compounds suitable for facilitating death of cancer cells in a subject by contacting tissue transglutaminase with a compound and identifying those compounds which bind to the tissue transglutaminase as candidate compounds suitable for facilitating death of cancer cells in a subject. The present invention also discloses methods of producing a tissue transglutaminase crystal suitable for X-ray diffraction as well as crystals produced by such methods. Also disclosed are compounds suitable for facilitating death of cancer cells in a subject as well as methods for designing such compounds.
    Type: Application
    Filed: February 24, 2004
    Publication date: December 23, 2004
    Inventors: Richard A. Cerione, Jon Clardy, Shenping Liu