Patents by Inventor Jonathan A. Ellman

Jonathan A. Ellman has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 9245290
    Abstract: This invention provides novel caspase inhibitors useful for prophylaxis or treatment of a number of pathologies, including, for example, Huntington's disease. In certain embodiments the inhibitors include inhibitors of casepase-3 and/or casepase-6.
    Type: Grant
    Filed: August 15, 2013
    Date of Patent: January 26, 2016
    Assignees: Buck Institute for Research on Aging, The Regents of the University of California
    Inventors: Lisa M. Ellerby, Jonathan A. Ellman, Melissa J. Leyva
  • Publication number: 20150276610
    Abstract: A nanoplasmonic resonator (NPR) comprising a metallic nanodisk with alternating shielding layer(s), having a tagged biomolecule conjugated or tethered to the surface of the nanoplasmonic resonator for highly sensitive measurement of enzymatic activity. NPRs enhance Raman signals in a highly reproducible manner, enabling fast detection of protease and enzyme activity, such as Prostate Specific Antigen (paPSA), in real-time, at picomolar sensitivity levels. Experiments on extracellular fluid (ECF) from paPSA-positive cells demonstrate specific detection in a complex bio-fluid background in real-time single-step detection in very small sample volumes.
    Type: Application
    Filed: February 7, 2014
    Publication date: October 1, 2015
    Applicant: The Regents of the University of California
    Inventors: Xiang ZHANG, Jonathan A. ELLMAN, Fanqing Frank CHEN, Kai-Hang SU, Qi-Huo WEI, Cheng SUN
  • Patent number: 9145575
    Abstract: This invention pertains to the in vitro detection of proteases using a single peptide-conjugate nanocrescent surface enhanced Raman scattering (SERS) probes with at least nanomolar sensitivity. The probe enables detection of proteolytic activity in extremely small volume and at low concentration. In certain embodiments the probes comprise an indicator for the detection of an active protease, where the indicator comprises a nanocrescent attached to a peptide, where said peptide comprises a recognition site for the protease and a Raman tag attached to the peptide.
    Type: Grant
    Filed: January 28, 2013
    Date of Patent: September 29, 2015
    Assignee: The Regents of the University of California
    Inventors: Gang L. Liu, Jonathan A. Ellman, Luke P. Lee, Fanqing Frank Chen
  • Patent number: 8685743
    Abstract: A nanoplasmonic resonator (NPR) comprising a metallic nanodisk with alternating shielding layer(s), having a tagged biomolecule conjugated or tethered to the surface of the nanoplasmonic resonator for highly sensitive measurement of enzymatic activity. NPRs enhance Raman signals in a highly reproducible manner, enabling fast detection of protease and enzyme activity, such as Prostate Specific Antigen (paPSA), in real-time, at picomolar sensitivity levels. Experiments on extracellular fluid (ECF) from paPSA-positive cells demonstrate specific detection in a complex bio-fluid background in real-time single-step detection in very small sample volumes.
    Type: Grant
    Filed: April 30, 2010
    Date of Patent: April 1, 2014
    Assignee: The Regents of the University of California
    Inventors: Xiang Zhang, Jonathan A. Ellman, Fanqing Frank Chen, Kai-Hang Su, Qi-Huo Wei, Cheng Sun
  • Publication number: 20140011847
    Abstract: This invention provides novel caspase inhibitors useful for prophylaxis or treatment of a number of pathologies, including, for example, Huntington's disease. In certain embodiments the inhibitors include inhibitors of casepase-3 and/or casepase-6.
    Type: Application
    Filed: August 15, 2013
    Publication date: January 9, 2014
    Applicants: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA, BUCK INSTITUTE FOR RESEARCH ON AGING
    Inventors: Lisa M. ELLERBY, Jonathan A. ELLMAN, Melissa J. LEYVA
  • Patent number: 8518942
    Abstract: This invention provides novel caspase inhibitors useful for prophylaxis or treatment of a number of pathologies, including, for example, Huntington's disease. In certain embodiments the inhibitors include inhibitors of casepase-3 and/or casepase-6.
    Type: Grant
    Filed: August 6, 2009
    Date of Patent: August 27, 2013
    Assignees: Buck Institute for Research on Aging, The Regents of the University of California
    Inventors: Lisa M. Ellerby, Jonathan A. Ellman, Melissa J. Leyva
  • Patent number: 8476451
    Abstract: The present invention provides novel tubulysin analogues, methods of making and methods of using such analogues and conjugates thereof. The compounds of the invention are highly potent cell-growth inhibitors have been developed that are smaller and considerably more stable than tubulysin D.
    Type: Grant
    Filed: July 21, 2008
    Date of Patent: July 2, 2013
    Assignee: The Regents of the University of California
    Inventors: Jonathan A. Ellman, Andrew W. Patterson, Hillary Peltier
  • Patent number: 8361932
    Abstract: This invention pertains to the in vitro detection of proteases using a single peptide-conjugate nanocrescent surface enhanced Raman scattering (SERS) probes with at least nanomolar sensitivity. The probe enables detection of proteolytic activity in extremely small volume and at low concentration. In certain embodiments the probes comprise an indicator for the detection of an active protease, where the indicator comprises a nanocrescent attached to a peptide, where said peptide comprises a recognition site for the protease and a Raman tag attached to the peptide.
    Type: Grant
    Filed: May 2, 2007
    Date of Patent: January 29, 2013
    Assignee: The Regents of the University of California
    Inventors: Gang L. Liu, Jonathan A. Ellman, Luke P. Lee, Fanqing Frank Chen
  • Patent number: 8273926
    Abstract: A method of preparing an olefin comprising: reacting a polyol in the presence of a carboxylic acid, such that an olefin is produced by the deoxygenation of the polyol. The reacting step can comprise (a) providing a composition comprising the polyol, (b) heating the composition, and (c) introducing the carboxylic acid to the composition wherein the introducing step occurs prior to, at the same time as, or subsequent to the heating step. In one embodiment, the polyol is glycerol, the carboxylic acid is formic acid, and the olefin is allyl alcohol, which is produced at a yield of about 80% or greater.
    Type: Grant
    Filed: July 27, 2009
    Date of Patent: September 25, 2012
    Assignee: The Regents of the University of California
    Inventors: Robert G. Bergman, Jonathan A. Ellman, Elena Arceo Rebollo, Peter C. Marsden
  • Publication number: 20110263650
    Abstract: The present invention provides novel tubulysin analogues, methods of making and methods of using such analogues and conjugates thereof. The essential features for the potent cytotoxicity of tubulysin D have been established for the first time by the synthesis and evaluation of a series of analogues. By identifying functionality that surprisingly is not necessary for activity, highly potent cell-growth inhibitors have been developed that are smaller and considerably more stable than tubulysin D.
    Type: Application
    Filed: July 21, 2008
    Publication date: October 27, 2011
    Applicant: HELMHOLTZ-ZENTRUM FÜR INFEKTIONS-FORSCHUNG GMBH
    Inventors: Jonathan A. Ellman, Andrew W. Patterson, Hillary Peltier, Florenz Sasse
  • Publication number: 20110230527
    Abstract: This invention provides novel caspase inhibitors useful for prophylaxis or treatment of a number of pathologies, including, for example, Huntington's disease. In certain embodiments the inhibitors include inhibitors of casepase-3 and/or casepase-6.
    Type: Application
    Filed: August 6, 2009
    Publication date: September 22, 2011
    Inventors: Lisa M. Ellerby, Jonathan A. Ellman
  • Publication number: 20110058164
    Abstract: A nanoplasmonic resonator (NPR) comprising a metallic nanodisk with alternating shielding layer(s), having a tagged biomolecule conjugated or tethered to the surface of the nanoplasmonic resonator for highly sensitive measurement of enzymatic activity. NPRs enhance Raman signals in a highly reproducible manner, enabling fast detection of protease and enzyme activity, such as Prostate Specific Antigen (paPSA), in real-time, at picomolar sensitivity levels. Experiments on extracellular fluid (ECF) from paPSA-positive cells demonstrate specific detection in a complex bio-fluid background in real-time single-step detection in very small sample volumes.
    Type: Application
    Filed: April 30, 2010
    Publication date: March 10, 2011
    Applicant: The Regents of the University of California
    Inventors: Xiang Zhang, Jonathan A. Ellman, Fanqing Frank Chen, Cheng Sun, Kai-Hang Su, Qi-Huo Wei
  • Publication number: 20110046018
    Abstract: This invention provides novel compositions and methods for the detection, and/or quantification, of the presence and/or activity of one or more kinases and/or phosphatases. In certain embodiments this invention a device for the detection of kinase and/or phosphatase activity where the device comprises a Raman active surface comprising features that enhance Raman scattering having attached thereto a plurality of kinase and/or phosphatase substrate molecules.
    Type: Application
    Filed: December 23, 2008
    Publication date: February 24, 2011
    Inventors: Fanqing Frank Chen, Gang L. Liu, Jonathan A. Ellman
  • Publication number: 20110021568
    Abstract: The present invention provides novel tubulysin analogues, methods of making and methods of using such analogues and conjugates thereof. The compounds of the invention are highly potent cell-growth inhibitors have been developed that are smaller and considerably more stable than tubulysin D.
    Type: Application
    Filed: July 21, 2008
    Publication date: January 27, 2011
    Applicant: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
    Inventors: Jonathan A. Ellman, Andrew W. Patterson, Hillary Peltier
  • Publication number: 20100048412
    Abstract: This invention pertains to the in vitro detection of proteases using a single peptide-conjugate nanocrescent surface enhanced Raman scattering (SERS) probes with at least nanomolar sensitivity. The probe enables detection of proteolytic activity in extremely small volume and at low concentration. In certain embodiments the probes comprise an indicator for the detection of an active protease, where the indicator comprises a nanocrescent attached to a peptide, where said peptide comprises a recognition site for the protease and a Raman tag attached to the peptide.
    Type: Application
    Filed: May 2, 2007
    Publication date: February 25, 2010
    Applicant: The Regents of the University of California
    Inventors: Gang L. Liu, Jonathan A. Ellman, Luke P. Lee, Fanqing Frank Chen
  • Patent number: 7629437
    Abstract: A method is presented for the preparation and use of fluorogenic peptide substrates that allows for the configuration of general substrate libraries to rapidly identify the primary and extended specificity of enzymes, such as proteases. The substrates contain a fluorogenic-leaving group, such as 7-amino-4-carbamoylmethyl-coumarin (ACC). Substrates incorporating the ACC leaving group show comparable kinetic profiles as those with the traditionally used 7-amino-4-methyl-coumarin (AMC) leaving group. The bifunctional nature of ACC allows for the efficient production of single substrates and substrate libraries using solid-phase synthesis techniques.
    Type: Grant
    Filed: October 15, 2003
    Date of Patent: December 8, 2009
    Assignee: The Regents of the University of California
    Inventors: Jennifer L. Harris, Bradley J. Backes, Jonathan A. Ellman, Charles S. Craik
  • Publication number: 20090287004
    Abstract: A method of preparing an olefin comprising: reacting a polyol in the presence of a carboxylic acid, such that an olefin is produced by the deoxygenation of the polyol. The reacting step can comprise (a) providing a composition comprising the polyol, (b) heating the composition, and (c) introducing the carboxylic acid to the composition wherein the introducing step occurs prior to, at the same time as, or subsequent to the heating step. In one embodiment, the polyol is glycerol, the carboxylic acid is formic acid, and the olefin is allyl alcohol, which is produced at a yield of about 80% or greater.
    Type: Application
    Filed: July 27, 2009
    Publication date: November 19, 2009
    Applicant: The Regents of the University of California
    Inventors: Robert G. Bergman, Jonathan A. Ellman, Elena Arceo Rebollo, Peter C. Marsden
  • Patent number: 7119105
    Abstract: The present invention relates to () non-peptide aspartyl protease inhibitors; (ii) methods for modulating the processing of an amyloid precursor protein (APP); (iii) methods for modulating the processing of a tau protein (?-protein); and (iv) methods for treating neurodegenerative diseases.
    Type: Grant
    Filed: February 5, 2004
    Date of Patent: October 10, 2006
    Assignee: The Regents of the University of California
    Inventors: Jonathan A. Ellman, Gary Lynch, Irwin D. Kuntz, Xiaoning Bi, Christina E. Lee, A. Geoffrey Skillman, Tasir Haque
  • Patent number: 7001727
    Abstract: A library of candidate target binding fragments (CTBF's) each CTBF being a small organic molecule and having a linkable functional group (LFG) or blocked form thereof (BLFG), wherein the LFG or BLFG contains a linking group (LG), the LG being a disulfide group.
    Type: Grant
    Filed: September 26, 2003
    Date of Patent: February 21, 2006
    Assignee: The Regents of the University of California
    Inventors: Jonathan A. Ellman, Ingrid Choong
  • Publication number: 20040175777
    Abstract: A method is presented for the preparation and use of fluorogenic peptide substrates that allows for the configuration of general substrate libraries to rapidly identify the primary and extended specificity of enzymes, such as proteases. The substrates contain a fluorogenic-leaving group, such as 7-amino-4-carbamoylmethyl-coumarin (ACC). Substrates incorporating the ACC leaving group show comparable kinetic profiles as those with the traditionally used 7-amino-4-methyl-coumarin (AMC) leaving group. The bifunctional nature of ACC allows for the efficient production of single substrates and substrate libraries using solid-phase synthesis techniques. The approximately 3-fold increased quantum yield of ACC over AMC permits reduction in enzyme and substrate concentrations. As a consequence, a greater number of substrates can be tolerated in a single assay, thus enabling an increase in the diversity space of the library.
    Type: Application
    Filed: October 15, 2003
    Publication date: September 9, 2004
    Applicant: The Regents of the University of California
    Inventors: Jennifer L. Harris, Bradley J. Backes, Jonathan A. Ellman, Charles S. Craik