Patents by Inventor Jonathan A. Ellman
Jonathan A. Ellman has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).
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Patent number: 9245290Abstract: This invention provides novel caspase inhibitors useful for prophylaxis or treatment of a number of pathologies, including, for example, Huntington's disease. In certain embodiments the inhibitors include inhibitors of casepase-3 and/or casepase-6.Type: GrantFiled: August 15, 2013Date of Patent: January 26, 2016Assignees: Buck Institute for Research on Aging, The Regents of the University of CaliforniaInventors: Lisa M. Ellerby, Jonathan A. Ellman, Melissa J. Leyva
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Publication number: 20150276610Abstract: A nanoplasmonic resonator (NPR) comprising a metallic nanodisk with alternating shielding layer(s), having a tagged biomolecule conjugated or tethered to the surface of the nanoplasmonic resonator for highly sensitive measurement of enzymatic activity. NPRs enhance Raman signals in a highly reproducible manner, enabling fast detection of protease and enzyme activity, such as Prostate Specific Antigen (paPSA), in real-time, at picomolar sensitivity levels. Experiments on extracellular fluid (ECF) from paPSA-positive cells demonstrate specific detection in a complex bio-fluid background in real-time single-step detection in very small sample volumes.Type: ApplicationFiled: February 7, 2014Publication date: October 1, 2015Applicant: The Regents of the University of CaliforniaInventors: Xiang ZHANG, Jonathan A. ELLMAN, Fanqing Frank CHEN, Kai-Hang SU, Qi-Huo WEI, Cheng SUN
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Patent number: 9145575Abstract: This invention pertains to the in vitro detection of proteases using a single peptide-conjugate nanocrescent surface enhanced Raman scattering (SERS) probes with at least nanomolar sensitivity. The probe enables detection of proteolytic activity in extremely small volume and at low concentration. In certain embodiments the probes comprise an indicator for the detection of an active protease, where the indicator comprises a nanocrescent attached to a peptide, where said peptide comprises a recognition site for the protease and a Raman tag attached to the peptide.Type: GrantFiled: January 28, 2013Date of Patent: September 29, 2015Assignee: The Regents of the University of CaliforniaInventors: Gang L. Liu, Jonathan A. Ellman, Luke P. Lee, Fanqing Frank Chen
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Patent number: 8685743Abstract: A nanoplasmonic resonator (NPR) comprising a metallic nanodisk with alternating shielding layer(s), having a tagged biomolecule conjugated or tethered to the surface of the nanoplasmonic resonator for highly sensitive measurement of enzymatic activity. NPRs enhance Raman signals in a highly reproducible manner, enabling fast detection of protease and enzyme activity, such as Prostate Specific Antigen (paPSA), in real-time, at picomolar sensitivity levels. Experiments on extracellular fluid (ECF) from paPSA-positive cells demonstrate specific detection in a complex bio-fluid background in real-time single-step detection in very small sample volumes.Type: GrantFiled: April 30, 2010Date of Patent: April 1, 2014Assignee: The Regents of the University of CaliforniaInventors: Xiang Zhang, Jonathan A. Ellman, Fanqing Frank Chen, Kai-Hang Su, Qi-Huo Wei, Cheng Sun
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Publication number: 20140011847Abstract: This invention provides novel caspase inhibitors useful for prophylaxis or treatment of a number of pathologies, including, for example, Huntington's disease. In certain embodiments the inhibitors include inhibitors of casepase-3 and/or casepase-6.Type: ApplicationFiled: August 15, 2013Publication date: January 9, 2014Applicants: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA, BUCK INSTITUTE FOR RESEARCH ON AGINGInventors: Lisa M. ELLERBY, Jonathan A. ELLMAN, Melissa J. LEYVA
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Patent number: 8518942Abstract: This invention provides novel caspase inhibitors useful for prophylaxis or treatment of a number of pathologies, including, for example, Huntington's disease. In certain embodiments the inhibitors include inhibitors of casepase-3 and/or casepase-6.Type: GrantFiled: August 6, 2009Date of Patent: August 27, 2013Assignees: Buck Institute for Research on Aging, The Regents of the University of CaliforniaInventors: Lisa M. Ellerby, Jonathan A. Ellman, Melissa J. Leyva
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Patent number: 8476451Abstract: The present invention provides novel tubulysin analogues, methods of making and methods of using such analogues and conjugates thereof. The compounds of the invention are highly potent cell-growth inhibitors have been developed that are smaller and considerably more stable than tubulysin D.Type: GrantFiled: July 21, 2008Date of Patent: July 2, 2013Assignee: The Regents of the University of CaliforniaInventors: Jonathan A. Ellman, Andrew W. Patterson, Hillary Peltier
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Patent number: 8361932Abstract: This invention pertains to the in vitro detection of proteases using a single peptide-conjugate nanocrescent surface enhanced Raman scattering (SERS) probes with at least nanomolar sensitivity. The probe enables detection of proteolytic activity in extremely small volume and at low concentration. In certain embodiments the probes comprise an indicator for the detection of an active protease, where the indicator comprises a nanocrescent attached to a peptide, where said peptide comprises a recognition site for the protease and a Raman tag attached to the peptide.Type: GrantFiled: May 2, 2007Date of Patent: January 29, 2013Assignee: The Regents of the University of CaliforniaInventors: Gang L. Liu, Jonathan A. Ellman, Luke P. Lee, Fanqing Frank Chen
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Patent number: 8273926Abstract: A method of preparing an olefin comprising: reacting a polyol in the presence of a carboxylic acid, such that an olefin is produced by the deoxygenation of the polyol. The reacting step can comprise (a) providing a composition comprising the polyol, (b) heating the composition, and (c) introducing the carboxylic acid to the composition wherein the introducing step occurs prior to, at the same time as, or subsequent to the heating step. In one embodiment, the polyol is glycerol, the carboxylic acid is formic acid, and the olefin is allyl alcohol, which is produced at a yield of about 80% or greater.Type: GrantFiled: July 27, 2009Date of Patent: September 25, 2012Assignee: The Regents of the University of CaliforniaInventors: Robert G. Bergman, Jonathan A. Ellman, Elena Arceo Rebollo, Peter C. Marsden
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Publication number: 20110263650Abstract: The present invention provides novel tubulysin analogues, methods of making and methods of using such analogues and conjugates thereof. The essential features for the potent cytotoxicity of tubulysin D have been established for the first time by the synthesis and evaluation of a series of analogues. By identifying functionality that surprisingly is not necessary for activity, highly potent cell-growth inhibitors have been developed that are smaller and considerably more stable than tubulysin D.Type: ApplicationFiled: July 21, 2008Publication date: October 27, 2011Applicant: HELMHOLTZ-ZENTRUM FÜR INFEKTIONS-FORSCHUNG GMBHInventors: Jonathan A. Ellman, Andrew W. Patterson, Hillary Peltier, Florenz Sasse
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Publication number: 20110230527Abstract: This invention provides novel caspase inhibitors useful for prophylaxis or treatment of a number of pathologies, including, for example, Huntington's disease. In certain embodiments the inhibitors include inhibitors of casepase-3 and/or casepase-6.Type: ApplicationFiled: August 6, 2009Publication date: September 22, 2011Inventors: Lisa M. Ellerby, Jonathan A. Ellman
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Publication number: 20110058164Abstract: A nanoplasmonic resonator (NPR) comprising a metallic nanodisk with alternating shielding layer(s), having a tagged biomolecule conjugated or tethered to the surface of the nanoplasmonic resonator for highly sensitive measurement of enzymatic activity. NPRs enhance Raman signals in a highly reproducible manner, enabling fast detection of protease and enzyme activity, such as Prostate Specific Antigen (paPSA), in real-time, at picomolar sensitivity levels. Experiments on extracellular fluid (ECF) from paPSA-positive cells demonstrate specific detection in a complex bio-fluid background in real-time single-step detection in very small sample volumes.Type: ApplicationFiled: April 30, 2010Publication date: March 10, 2011Applicant: The Regents of the University of CaliforniaInventors: Xiang Zhang, Jonathan A. Ellman, Fanqing Frank Chen, Cheng Sun, Kai-Hang Su, Qi-Huo Wei
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Publication number: 20110046018Abstract: This invention provides novel compositions and methods for the detection, and/or quantification, of the presence and/or activity of one or more kinases and/or phosphatases. In certain embodiments this invention a device for the detection of kinase and/or phosphatase activity where the device comprises a Raman active surface comprising features that enhance Raman scattering having attached thereto a plurality of kinase and/or phosphatase substrate molecules.Type: ApplicationFiled: December 23, 2008Publication date: February 24, 2011Inventors: Fanqing Frank Chen, Gang L. Liu, Jonathan A. Ellman
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Publication number: 20110021568Abstract: The present invention provides novel tubulysin analogues, methods of making and methods of using such analogues and conjugates thereof. The compounds of the invention are highly potent cell-growth inhibitors have been developed that are smaller and considerably more stable than tubulysin D.Type: ApplicationFiled: July 21, 2008Publication date: January 27, 2011Applicant: THE REGENTS OF THE UNIVERSITY OF CALIFORNIAInventors: Jonathan A. Ellman, Andrew W. Patterson, Hillary Peltier
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Publication number: 20100048412Abstract: This invention pertains to the in vitro detection of proteases using a single peptide-conjugate nanocrescent surface enhanced Raman scattering (SERS) probes with at least nanomolar sensitivity. The probe enables detection of proteolytic activity in extremely small volume and at low concentration. In certain embodiments the probes comprise an indicator for the detection of an active protease, where the indicator comprises a nanocrescent attached to a peptide, where said peptide comprises a recognition site for the protease and a Raman tag attached to the peptide.Type: ApplicationFiled: May 2, 2007Publication date: February 25, 2010Applicant: The Regents of the University of CaliforniaInventors: Gang L. Liu, Jonathan A. Ellman, Luke P. Lee, Fanqing Frank Chen
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Patent number: 7629437Abstract: A method is presented for the preparation and use of fluorogenic peptide substrates that allows for the configuration of general substrate libraries to rapidly identify the primary and extended specificity of enzymes, such as proteases. The substrates contain a fluorogenic-leaving group, such as 7-amino-4-carbamoylmethyl-coumarin (ACC). Substrates incorporating the ACC leaving group show comparable kinetic profiles as those with the traditionally used 7-amino-4-methyl-coumarin (AMC) leaving group. The bifunctional nature of ACC allows for the efficient production of single substrates and substrate libraries using solid-phase synthesis techniques.Type: GrantFiled: October 15, 2003Date of Patent: December 8, 2009Assignee: The Regents of the University of CaliforniaInventors: Jennifer L. Harris, Bradley J. Backes, Jonathan A. Ellman, Charles S. Craik
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Publication number: 20090287004Abstract: A method of preparing an olefin comprising: reacting a polyol in the presence of a carboxylic acid, such that an olefin is produced by the deoxygenation of the polyol. The reacting step can comprise (a) providing a composition comprising the polyol, (b) heating the composition, and (c) introducing the carboxylic acid to the composition wherein the introducing step occurs prior to, at the same time as, or subsequent to the heating step. In one embodiment, the polyol is glycerol, the carboxylic acid is formic acid, and the olefin is allyl alcohol, which is produced at a yield of about 80% or greater.Type: ApplicationFiled: July 27, 2009Publication date: November 19, 2009Applicant: The Regents of the University of CaliforniaInventors: Robert G. Bergman, Jonathan A. Ellman, Elena Arceo Rebollo, Peter C. Marsden
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Patent number: 7119105Abstract: The present invention relates to () non-peptide aspartyl protease inhibitors; (ii) methods for modulating the processing of an amyloid precursor protein (APP); (iii) methods for modulating the processing of a tau protein (?-protein); and (iv) methods for treating neurodegenerative diseases.Type: GrantFiled: February 5, 2004Date of Patent: October 10, 2006Assignee: The Regents of the University of CaliforniaInventors: Jonathan A. Ellman, Gary Lynch, Irwin D. Kuntz, Xiaoning Bi, Christina E. Lee, A. Geoffrey Skillman, Tasir Haque
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Patent number: 7001727Abstract: A library of candidate target binding fragments (CTBF's) each CTBF being a small organic molecule and having a linkable functional group (LFG) or blocked form thereof (BLFG), wherein the LFG or BLFG contains a linking group (LG), the LG being a disulfide group.Type: GrantFiled: September 26, 2003Date of Patent: February 21, 2006Assignee: The Regents of the University of CaliforniaInventors: Jonathan A. Ellman, Ingrid Choong
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Publication number: 20040175777Abstract: A method is presented for the preparation and use of fluorogenic peptide substrates that allows for the configuration of general substrate libraries to rapidly identify the primary and extended specificity of enzymes, such as proteases. The substrates contain a fluorogenic-leaving group, such as 7-amino-4-carbamoylmethyl-coumarin (ACC). Substrates incorporating the ACC leaving group show comparable kinetic profiles as those with the traditionally used 7-amino-4-methyl-coumarin (AMC) leaving group. The bifunctional nature of ACC allows for the efficient production of single substrates and substrate libraries using solid-phase synthesis techniques. The approximately 3-fold increased quantum yield of ACC over AMC permits reduction in enzyme and substrate concentrations. As a consequence, a greater number of substrates can be tolerated in a single assay, thus enabling an increase in the diversity space of the library.Type: ApplicationFiled: October 15, 2003Publication date: September 9, 2004Applicant: The Regents of the University of CaliforniaInventors: Jennifer L. Harris, Bradley J. Backes, Jonathan A. Ellman, Charles S. Craik