Patents by Inventor Jonathan Kaufman

Jonathan Kaufman has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20260112455
    Abstract: A method for identifying compounds with threshold activity against a target macromolecule first generates multiple poses for each compound fragment in a plurality of compound fragments against an atomic model of the target macromolecule. This creates a collection of configurations, or a “pose set,” for the compound fragments. Each pose is associated with a subset of interaction features drawn from a broader set of such features. Each feature corresponds to a subregion of the target macromolecule's atomic model. Each pose is quantified by application to a physics model. This assigns a score to the interaction features associated with the poses. A binding hypothesis is formed for the macromolecule, using the collection of interaction features and their corresponding scores. From this hypothesis, derived compounds are identified. These derived compounds are tested for their activity against the macromolecule, leading to the identification of those that exhibit the desired threshold activity.
    Type: Application
    Filed: October 21, 2025
    Publication date: April 23, 2026
    Inventors: Jonathan Kaufman, Derek Miller
  • Publication number: 20260080972
    Abstract: A method for identifying derived compounds exhibiting activity for a target macromolecule generates experiences. Each experience uses an initial compound in plurality of initial compounds to construct a derived compound through a hierarchical proximal policy. The policy has a parent molecular reaction model and a child reactant model that uses an environment of the target macromolecule. The parent model evaluates a plurality of molecular reactions. The child model evaluates a corresponding plurality of reactants for a selected molecular reaction. Using the plurality of experiences, the parameters of the parent model are updated in accordance with a first surrogate objective while the parameters of the child model are updated in accordance with a second surrogate objective. The generation of derived compounds and hierarchical proximal policy updating continues until convergence. Then, a subset of the derived compounds from the experiences is tested for activity against the target macromolecule.
    Type: Application
    Filed: September 16, 2025
    Publication date: March 19, 2026
    Inventors: Derek Miller, Jonathan Kaufman, Matthew Tieman
  • Publication number: 20250271525
    Abstract: The invention provides systems and methods for providing a diagnostic examination to a patient, including, but not limited to a determination of the permeability of a patients' body cavity.
    Type: Application
    Filed: May 6, 2025
    Publication date: August 28, 2025
    Inventors: Jonathan KAUFMAN, Michael B. CHANCELLOR
  • Patent number: 12326492
    Abstract: The invention provides systems and methods for providing a diagnostic examination to a patient, including, but not limited to a determination of the permeability of a patients' body cavity.
    Type: Grant
    Filed: November 30, 2018
    Date of Patent: June 10, 2025
    Assignee: LIPELLA PHARMACEUTICALS, INC.
    Inventors: Jonathan Kaufman, Michael B. Chancellor
  • Publication number: 20240347130
    Abstract: Systems and methods for characterizing interactions between molecules and targets are provided. Candidate molecules are selected using first interaction scores for each molecule and a target. Molecular graphs of each molecule are inputted into a first and/or second model to retrieve a first plurality of on-target interaction features or a second plurality of off-target interaction features, respectively. Second interaction scores are obtained using the first and/or second plurality of features and evaluated to filter the plurality of candidate molecules. For each molecule, a third plurality of binding affinity interaction features and/or a fourth plurality of specificity interaction features are determined. The plurality of candidate molecules is filtered based at least on counts of features in the third and/or fourth plurality of features. Predictions of interaction between each molecule and the target are determined using at least the third and/or fourth plurality of features.
    Type: Application
    Filed: April 12, 2024
    Publication date: October 17, 2024
    Inventors: Derek Miller, Jonathan Kaufman
  • Publication number: 20230240990
    Abstract: Provided are liposomes that encapsulate adenosine. The liposomes may be formed from sphingomyelin or a combination of sphingomyelin and 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) or a combination of sphingomyelin and 1,2-dimyristoyl-sn-glycero-3-phosphorylglycerol (DMPG) or a combination of sphingomyelin, DMPG, and DMPC. The liposomes encapsulating adenosine may be used to induce cartilage regeneration, treat osteoarthritis, alleviate joint pain, and/or slow, arrest, and/or reverse progressive structural tissue damage associated with osteoarthritis or treat osteoarthritis, rheumatoid arthritis, acute gouty arthritis, and/or synovitis. The liposomes may release adenosine for up to two weeks.
    Type: Application
    Filed: January 25, 2023
    Publication date: August 3, 2023
    Inventors: Siddhesh R. ANGLE, Carmen CORCIULO, Bruce N. CRONSTEIN, Jonathan KAUFMAN
  • Patent number: 11607386
    Abstract: Provided are liposomes that encapsulate adenosine. The liposomes may be formed from sphingomyelin or a combination of sphingomyelin and 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) or a combination of sphingomyelin and 1,2-dimyristoyl-sn-glycero-3-phosphorylglycerol (DMPG) or a combination of sphingomyelin, DMPG, and DMPC. The liposomes encapsulating adenosine may be used to induce cartilage regeneration, treat osteoarthritis, alleviate joint pain, and/or slow, arrest, and/or reverse progressive structural tissue damage associated with osteoarthritis or treat osteoarthritis, rheumatoid arthritis, acute gouty arthritis, and/or synovitis. The liposomes may release adenosine for up to two weeks.
    Type: Grant
    Filed: April 3, 2020
    Date of Patent: March 21, 2023
    Assignee: New York University
    Inventors: Siddhesh R. Angle, Carmen Corciulo, Bruce N. Cronstein, Jonathan Kaufman
  • Publication number: 20220168223
    Abstract: Provided are liposomes that encapsulate adenosine. The liposomes may be formed from sphingomyelin or a combination of sphingomyelin and 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) or a combination of sphingomyelin and 1,2-dimyristoyl-sn-glycero-3-phosphorylglycerol (DMPG) or a combination of sphingomyelin, DMPG, and DMPC. The liposomes encapsulating adenosine may be used to induce cartilage regeneration, treat osteoarthritis, alleviate joint pain, and/or slow, arrest, and/or reverse progressive structural tissue damage associated with osteoarthritis or treat osteoarthritis, rheumatoid arthritis, acute gouty arthritis, and/or synovitis. The liposomes may release adenosine for up to two weeks.
    Type: Application
    Filed: April 3, 2020
    Publication date: June 2, 2022
    Inventors: Siddhesh R. ANGLE, Carmen CORCIULO, Bruce N. CRONSTEIN, Jonathan KAUFMAN
  • Publication number: 20190094323
    Abstract: The invention provides systems and methods for providing a diagnostic examination to a patient, including, but not limited to a determination of the permeability of a patients' body cavity.
    Type: Application
    Filed: November 30, 2018
    Publication date: March 28, 2019
    Inventors: Jonathan KAUFMAN, Michael B. CHANCELLOR
  • Publication number: 20170189564
    Abstract: The invention provides systems and methods for providing a diagnostic examination to a patient, including, but not limited to a determination of the permeability of a patients' body cavity.
    Type: Application
    Filed: April 3, 2015
    Publication date: July 6, 2017
    Inventors: Jonathan Kaufman, Michael B. Chancellor
  • Publication number: 20160136306
    Abstract: The invention provides systems and methods for providing a diagnostic examination to a patient, including, but not limited to a determination of the permeability of a patients' body cavity.
    Type: Application
    Filed: April 3, 2015
    Publication date: May 19, 2016
    Inventors: Jonathan Kaufman, Michael B. Chancellor
  • Publication number: 20160045623
    Abstract: The invention provides systems and methods for providing a diagnostic examination to a patient, including, but not limited to a determination of the permeability of a patients' body cavity.
    Type: Application
    Filed: September 23, 2015
    Publication date: February 18, 2016
    Inventors: Jonathan KAUFMAN, Ari GOLDBERG
  • Publication number: 20150030667
    Abstract: Methods and compositions for treating underactive bladder and/or symptoms thereof are disclosed, wherein the composition including an effective amount of a therapeutic agent and a pharmaceutically acceptable lipid vehicle is locally administered to the bladder, thereby treating the underactive bladder and/or symptoms thereof.
    Type: Application
    Filed: March 25, 2014
    Publication date: January 29, 2015
    Applicant: LIPELLA PHARMACEUTICALS, INC.
    Inventors: Jonathan KAUFMAN, Michael B. CHANCELLOR
  • Publication number: 20100280331
    Abstract: Non-invasive methods and devices are disclosed to derive estimates of body Core Temperature from external sensors that provide electrocardiograph (ECG) data, and Mean Skin Temperature data. The ECG and Mean Skin Temperature are input to a model that provides estimates of Core Temperature temperature. The model is derived regressively from ECG, Mean Skin Temperature and Core Temperature data obtained from a number of test subjects. A monitoring device may be used, for example, to trigger an alarm, display Core Temperature data to the device wearer or to a remote monitoring station, or to activate an emergency temperature control system or device.
    Type: Application
    Filed: November 28, 2007
    Publication date: November 4, 2010
    Inventors: Jonathan Kaufman, Stephen M. Coleman
  • Patent number: 7456131
    Abstract: A monolith comprises a zeolite, a thermally conductive carbon, and a binder. The zeolite is included in the form of beads, pellets, powders and mixtures thereof. The thermally conductive carbon can be carbon nano-fibers, diamond or graphite which provide thermal conductivities in excess of about 100 W/m·K to more than 1,000 W/m·K. A method of preparing a zeolite monolith includes the steps of mixing a zeolite dispersion in an aqueous colloidal silica binder with a dispersion of carbon nano-fibers in water followed by dehydration and curing of the binder is given.
    Type: Grant
    Filed: August 28, 2006
    Date of Patent: November 25, 2008
    Assignee: UT-Battelle, LLC
    Inventors: James Klett, Lynn Klett, Jonathan Kaufman
  • Publication number: 20080078034
    Abstract: A method for dyeing high density polyethelene fiber fabric, which includes applying an aliphatic stain on the fabric.
    Type: Application
    Filed: September 29, 2006
    Publication date: April 3, 2008
    Inventors: Jonathan Kaufman, Rodney Pursell, Lynn B. Klett, James W. Klett
  • Publication number: 20080051279
    Abstract: A monolith comprises a zeolite, a thermally conductive carbon, and a binder. The zeolite is included in the form of beads, pellets, powders and mixtures thereof. The thermally conductive carbon can be carbon nano-fibers, diamond or graphite which provide thermal conductivities in excess of about 100 W/m·K to more than 1,000 W/m·K. A method of preparing a zeolite monolith includes the steps of mixing a zeolite dispersion in an aqueous colloidal silica binder with a dispersion of carbon nano-fibers in water followed by dehydration and curing of the binder is given.
    Type: Application
    Filed: August 28, 2006
    Publication date: February 28, 2008
    Applicant: UT-BATTELLE, LLC
    Inventors: James Klett, Lynn Klett, Jonathan Kaufman
  • Publication number: 20070187531
    Abstract: An apparatus to amalgamate substances which includes at least two substance holding tanks, an inert gas tank, an amalgamation mixing chamber, and a nozzle. The inert gas tank is in fluid communication with the at least two substance holding tanks such that when actuated, inert gas will further pressurize substances contained in the at least two substance holding tanks. The amalgamation mixing chamber is in fluid communication with the at least two substance holding tanks such that when actuated, the substances in the at least two substance holding tanks enter and mix in the amalgamation mixing chamber. The nozzle is in fluid communication with the amalgamation mixing chamber such that when actuated, the mixed substances in the amalgamated mixing chamber are discharged from the nozzle.
    Type: Application
    Filed: February 14, 2006
    Publication date: August 16, 2007
    Inventors: Joseph Wolfe, Jonathan Kaufman
  • Publication number: 20070028930
    Abstract: To treat premature ejaculation, delay ejaculation, or improve male sexual control, control bladder urgency and/or minimize or alleviate irritated bladder or bladder urgency, an effective amount of St. John's Wort extract rich in hyperforin is administered to a male prior to sexual intercourse, or to a male or female patient otherwise in need thereof.
    Type: Application
    Filed: June 27, 2006
    Publication date: February 8, 2007
    Applicant: Delithe Natural Products Inc.
    Inventors: Michael Chancellor, Pradeep Tyagi, Jonathan Kaufman
  • Publication number: 20060253025
    Abstract: An invention is disclosed for the assessment of various properties of bone. A method and apparatus are disclosed that use a pair of non-contact (i.e., air-coupled) ultrasound transducers. The invention includes a pair of non-contact ultrasound transducers placed above skin on opposite sides of the bone and generating an ultrasound signal and directing the signal through both the bone to obtain a bone output signal. The method further includes establishing a set of parameters associated with the bone output signal and then further processing the parameters in order to obtain the desired bone property. Apparatuses for the assessment of various properties of bone are also provided. The apparatus includes a pair of ultrasound transducers which may be single-element transducers, focused, or array transducers in any combination.
    Type: Application
    Filed: April 20, 2006
    Publication date: November 9, 2006
    Inventor: Jonathan Kaufman