Patents by Inventor Jonathan M. Cassel

Jonathan M. Cassel has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 11807900
    Abstract: Some embodiments presented in this disclosure concern an Automated Tissue Dissection (ATD) System. An ATD system is a one stop, and potentially low-cost, system to perform dissections on a substrate from pathologist digital mark or pen mark on the substrate using non-contact and/or mechanical method to extract a Formalin-Fixed Paraffin-Embedded (FFPE) tissue sample with: (a) only the ROI or ROIs as area to be saved; and (b) remove or decompose nucleic acid content in the region of no interest (RONI) and collect all tissue sample from a standard microscope substrate into a specific container.
    Type: Grant
    Filed: June 21, 2019
    Date of Patent: November 7, 2023
    Assignee: Genomic Health, Inc.
    Inventors: Hubert Yeung, Amy Lee Hsieh Yuan, Chun Wai Lee, Gabriel Jesus Samuel Perlas Moraleda, Jonathan M. Cassel
  • Publication number: 20230096149
    Abstract: The present disclosure provides reagents that can be used to label synthetic oligonucleotides with rhodamine dyes or dye networks that contain rhodamine dyes.
    Type: Application
    Filed: June 30, 2022
    Publication date: March 30, 2023
    Applicant: Applied Biosystems, LLC
    Inventors: Scott C. Benson, Ruiming N. Zou, Krishna G. Upadhya, Paul M. Kenney, Jonathan M. Cassel
  • Patent number: 11407773
    Abstract: The present disclosure provides reagents that can be used to label synthetic oligonucleotides with rhodamine dyes or dye networks that contain rhodamine dyes.
    Type: Grant
    Filed: January 30, 2020
    Date of Patent: August 9, 2022
    Assignee: Applied Biosystems, LLC
    Inventors: Scott C. Benson, Ruiming N. Zou, Krishna G. Upadhya, Paul M. Kenney, Jonathan M. Cassel
  • Publication number: 20200270287
    Abstract: The present disclosure provides reagents that can be used to label synthetic oligonucleotides with rhodamine dyes or dye networks that contain rhodamine dyes.
    Type: Application
    Filed: January 30, 2020
    Publication date: August 27, 2020
    Applicant: Applied Biosystems, LLC
    Inventors: Scott C. Benson, Ruiming N. Zou, Krishna G. Upadhya, Paul M. Kenney, Jonathan M. Cassel
  • Publication number: 20190390252
    Abstract: Some embodiments presented in this disclosure concern an Automated Tissue Dissection (ATD) System. An ATD system is a one stop, and potentially low-cost, system to perform dissections on a substrate from pathologist digital mark or pen mark on the substrate using non-contact and/or mechanical method to extract a Formalin-Fixed Paraffin-Embedded (FFPE) tissue sample with: (a) only the ROI or ROIs as area to be saved; and (b) remove or decompose nucleic acid content in the region of no interest (RONI) and collect all tissue sample from a standard microscope substrate into a specific container.
    Type: Application
    Filed: June 21, 2019
    Publication date: December 26, 2019
    Inventors: Hubert Yeung, Amy Lee Hsieh Yuan, Chun Wai Lee, Gabriel Jesus Samuel Perlas Moraleda, Jonathan M. Cassel
  • Publication number: 20180057516
    Abstract: The present disclosure provides reagents that can be used to label synthetic oligonucleotides with rhodamine dyes or dye networks that contain rhodamine dyes.
    Type: Application
    Filed: September 1, 2017
    Publication date: March 1, 2018
    Applicant: Applied Biosystems, LLC
    Inventors: Scott C. Benson, Ruiming N. Zou, Krishna G. Upadhya, Paul M. Kenney, Jonathan M. Cassel
  • Patent number: 9783560
    Abstract: The present disclosure provides reagents that can be used to label synthetic oligonucleotides with rhodamine dyes or dye networks that contain rhodamine dyes.
    Type: Grant
    Filed: May 1, 2015
    Date of Patent: October 10, 2017
    Assignee: Applied Biosystems, LLC
    Inventors: Scott C. Benson, Ruiming N. Zou, Krishna G. Upadhya, Paul M. Kenney, Jonathan M. Cassel
  • Publication number: 20150232494
    Abstract: The present disclosure provides reagents that can be used to label synthetic oligonucleotides with rhodamine dyes or dye networks that contain rhodamine dyes.
    Type: Application
    Filed: May 1, 2015
    Publication date: August 20, 2015
    Inventors: Scott C. BENSON, Ruiming N. ZOU, Krishna G. UPADHYA, Paul M. KENNEY, Jonathan M. CASSEL
  • Patent number: 9040674
    Abstract: The present disclosure provides reagents that can be used to label synthetic oligonucleotides with rhodamine dyes or dye networks that contain rhodamine dyes.
    Type: Grant
    Filed: April 2, 2007
    Date of Patent: May 26, 2015
    Assignee: Applied Biosystems, LLC
    Inventors: Scott C. Benson, Ruiming N. Zou, Krishna G. Upadhya, Paul M. Kenney, Jonathan M. Cassel
  • Publication number: 20090023189
    Abstract: Methods and systems for forming water-in-oil emulsions are described. For example, an apparatus is described which includes: a first compartment containing a plurality of particles dispersed in an aqueous phase; a second compartment containing an oil phase; a porous layer separating the first and second compartments; and a device for applying pressure to the first compartment. A method is described which includes: moving an oil phase relative to a surface of a porous layer while simultaneously forcing an aqueous composition comprising particles through the porous layer and into the flowing dispersion medium thereby forming droplets of the aqueous composition containing particles dispersed in the oil phase. The aqueous composition can include one or more nucleic acid templates and reagents for amplifying the nucleic acids such as PCR reagents.
    Type: Application
    Filed: May 12, 2008
    Publication date: January 22, 2009
    Applicant: APPLERA CORPORATION
    Inventors: Aldrich N.K. Lau, Jonathan M. Cassel, John A. Bridgham
  • Patent number: 6025505
    Abstract: A class of 4,7-dichlororhodamine compounds useful as fluorescent dyes are disclosed having the structure ##STR1## wherein R.sub.1 -R.sub.6 are hydrogen, fluorine, chlorine, lower alkyl, lower alkene, lower alkyne, sulfonate, sulfone, amino, amido, nitrile, lower alkoxy, linking group, or combinations thereof, or, when taken together, R.sub.1 and R.sub.6 is benzo, or, when taken together, R.sub.4 and R.sub.5 is benzo; Y.sub.1 -Y.sub.4 are hydrogen or lower alkyl, or, when taken together, Y.sub.1 and R.sub.2, Y.sub.2 and R.sub.1 Y.sub.3 and R.sub.3, or Y.sub.4 and R.sub.4 is propano, ethano, or substituted forms thereof, and X.sub.1 -X.sub.3 taken separately are selected from the group consisting of hydrogen, chlorine, fluorine, lower alkyl, carboxylate, sulfonic acid, --CH.sub.2 OH, and linking group. In another aspect, the invention includes reagents labeled with the 4,7-dichlororhodamine dye compounds, including deoxynucleotides, dideoxynucleotides, and polynucleotides.
    Type: Grant
    Filed: March 10, 1998
    Date of Patent: February 15, 2000
    Assignee: The Perkin-Elmer Corporation
    Inventors: Linda G. Lee, Scott C. Benson, Barnett B. Rosenblum, Sandra L. Spurgeon, Jonathan M. Cassel, Ronald J. Graham
  • Patent number: 6017712
    Abstract: A class of 4,7-dichlororhodamine compounds useful as fluorescent dyes are disclosed having the structure ##STR1## wherein R.sub.1 -R.sub.6 are hydrogen, fluorine, chlorine, lower alkyl, lower alkene, lower alkyne, sulfonate, sulfone, amino, amido, nitrile, lower alkoxy, linking group, or combinations thereof, or, when taken together, R.sub.1 and R.sub.6 is benzo, or, when taken together, R.sub.4 and R.sub.5 is benzo; Y.sub.1 -Y.sub.4 are hydrogen or lower alkyl, or, when taken together, Y.sub.1 and R.sub.2, Y.sub.2 and R.sub.1 Y.sub.3 and R.sub.3, or Y.sub.4 and R.sub.4 is propano, ethano, or substituted forms thereof; and X.sub.1 -X.sub.3 taken separately are selected from the group consisting of hydrogen, chlorine, fluorine, lower alkyl, carboxylate, sulfonic acid, --CH.sub.2 OH, and linking group. In another aspect, the invention includes reagents labeled with the 4,7-chlororhodamine dye compounds, including deoxynucleotides, dideoxynucleotides, and polynucleotides.
    Type: Grant
    Filed: November 12, 1998
    Date of Patent: January 25, 2000
    Inventors: Linda Lee, Scott C. Benson, Barnett B. Rosenblum, Sandra L. Spurgeon, Jonathan M. Cassel, Ronald J. Graham
  • Patent number: 5744107
    Abstract: Heavy metals are efficiently removed from contaminated soil by a process which comprises leaching or washing the soil with a mild leachant solution. The leachant solution is comprised of an aqueous solution of an acid and a salt. The anion of the acid forms a water-soluble salt with the heavy metals which contaminate the soil. The salt component is comprised of at least one alkali metal, alkaline earth metal, or an ammonium salt having one or more anions which also form a water-soluble salt with the heavy metals leached from the contaminated soil.
    Type: Grant
    Filed: December 16, 1994
    Date of Patent: April 28, 1998
    Assignee: Henkel Corporation
    Inventors: William E. Fristad, Michael J. Virnig, Jonathan M. Cassel
  • Patent number: 5639894
    Abstract: A process for the carbonylation of allylic alcohols such as nerolidol, farnesol, or their monocyclic analogues with carbon monoxide at a pressure of at least 30 bar in the presence of a polar solvent and a palladium halide catalyst, optionally an alkali metal halide salt, and optionally an alcoholic solvent. The carbonylated product may then be reduced to the corresponding alcohol, which is cyclized in the presence of Lewis or Bronsted acids to afford an ambergris fragrance compound.
    Type: Grant
    Filed: March 23, 1994
    Date of Patent: June 17, 1997
    Assignee: Henkel Kommanditgesellschaft auf Aktien
    Inventors: Jonathan M. Cassel, Steven M. Hoagland, James M. Renga
  • Patent number: 5494649
    Abstract: Heavy metals are removed from paint chips by leaching with an aqueous acid. Heavy metals are also efficiently removed from contaminated soil by a process which comprises leaching or washing the soil with a mild leachant solution comprised of an aqueous solution of an acid and a salt. The heavy metals are recovered from the leachant by cementation.
    Type: Grant
    Filed: August 17, 1992
    Date of Patent: February 27, 1996
    Assignee: Cognis, Inc.
    Inventors: William E. Fristad, Michael J. Virnig, Jonathan M. Cassel, Dana K. Elliot
  • Patent number: 5326885
    Abstract: Enriched enantiomers of glycerol Carbonate are produced under the influence of a hydrolytic enzyme, either by selective esterification of racemic glycerol carbonate or by selective hydrolysis of an ester of the racemate. The enriched enantiomeric product is readily converted to starting materials and intermediates useful in the synthesis of enantiomerically pure therapeutic agents, such as .beta.-adrenergic blockers.
    Type: Grant
    Filed: October 21, 1993
    Date of Patent: July 5, 1994
    Assignee: Cognis, Inc.
    Inventors: Alan G. Olivero, Jonathan M. Cassel, James R. Poulsen
  • Patent number: 5326888
    Abstract: A process for the carbonylation of allylic alcohols such as nerolidol, farnesol, or their monocyclic analogues with carbon monoxide at a pressure of at least 30 bar in the presence of a polar solvent and a palladium halide catalyst, optionally an alkali metal halide salt, and optionally an alcoholic solvent. The carbonylated product may then be reduced to the corresponding alcohol, which is cyclized in the presence of Lewis or Bronsted acids to afford an ambergris fragrance compound.
    Type: Grant
    Filed: October 9, 1990
    Date of Patent: July 5, 1994
    Assignee: Henkel Research Corporation
    Inventors: Jonathan M. Cassel, Steven M. Hoagland, James M. Renga