Patents by Inventor Jonathan T. Vogel

Jonathan T. Vogel has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20240071569
    Abstract: Apparatuses, systems, and methods are provided that may analyze deoxyribonucleic add (DNA) sequence data using a natural language processing (NLP) model to, for example, identify genetic elements such as known and/or novel cis-regulatory elements {e.g., known and/or putative novel drought-responsive cis-regulatory elements (DREs)). Apparatuses, systems, and methods are also provided that may identify transcriptional regulators {e.g., upstream transcriptional regulators of a novel putative DRE) based on natural language processing (NLP) model data and expression genome-wide association study (eGWAS) data. Apparatuses, systems, and methods are also provided that may verify putative novel cis-regulatory elements based on a comparison of natural language processing (NLP) model output data and other model output data.
    Type: Application
    Filed: November 1, 2021
    Publication date: February 29, 2024
    Inventors: Erin Marie Davis, Sebastian Hermann Martschat, Jonathan T. Vogel
  • Publication number: 20220139498
    Abstract: Apparatuses, systems, and methods are provided that may analyze deoxyribonucleic add (DNA) sequence data using a natural language processing (NLP) model to, for example, identify genetic elements such as known and/or novel cis-regulatory elements (e.g., known and/or putative novel drought-responsive cis-regulatory elements (DREs)). Apparatuses, systems, and methods are also provided that may identify transcriptional regulators (e.g., upstream transcriptional regulators of a novel putative DRE) based on natural language processing (NLP) model data and expression genome-wide association study (eGWAS) data. Apparatuses, systems, and methods are also provided that may verify putative novel cis-regulatory elements based on a comparison of natural language processing (NLP) model output data and other model output data.
    Type: Application
    Filed: November 4, 2020
    Publication date: May 5, 2022
    Inventors: Erin Marie Davis, Sebastian Hermann Martschat, Jonathan T. Vogel