Patents by Inventor Joshua Jacques Coon

Joshua Jacques Coon has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230282470
    Abstract: Systems and methods for controllably forming an analyte layer comprising amorphous ice and/or other frozen amorphous solids on a substrate.
    Type: Application
    Filed: March 3, 2023
    Publication date: September 7, 2023
    Inventors: Joshua Jacques COON, Michael Scott WESTPHALL
  • Patent number: 11728146
    Abstract: Imaging by cryo-electron microscopy (cryo-EM) requires that a sample be encased in an amorphous solid, such as amorphous ice. In current cryo-EM preparation systems, once the sample has been deposited on an EM grid and coated in the amorphous solid, the EM grid must be removed from vacuum and then transferred into the vacuum of the cryo-EM system. As a result, samples deposited on the grid are exposed to damage and contamination. The present invention provides improved EM grid handling systems and devices compatible with advanced cryo-EM sample preparation techniques and which reduce or eliminate exposure of the sample on the grid to atmosphere and elevated temperatures. These methods and devices will also significantly reduce handling time and complexities associated with cryo-EM sample preparation.
    Type: Grant
    Filed: January 13, 2022
    Date of Patent: August 15, 2023
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: Michael Scott Westphall, Joshua Jacques Coon
  • Patent number: 11692983
    Abstract: The present invention provides reagents for instrumentation quality control and methods of use thereof. In particular, sets of peptides or other molecules are provided for evaluating the performance of instruments with mass spectrometry (MS) and/or liquid chromatography (LC) functionalities.
    Type: Grant
    Filed: January 27, 2021
    Date of Patent: July 4, 2023
    Assignee: Promega Corporation
    Inventors: Joshua Jacques Coon, Michael M. Rosenblatt, Marjeta Urh
  • Publication number: 20220223394
    Abstract: Imaging by cryo-electron microscopy (cryo-EM) requires that a sample be encased in an amorphous solid, such as amorphous ice. In current cryo-EM preparation systems, once the sample has been deposited on an EM grid and coated in the amorphous solid, the EM grid must be removed from vacuum and then transferred into the vacuum of the cryo-EM system. As a result, samples deposited on the grid are exposed to damage and contamination. The present invention provides improved EM grid handling systems and devices compatible with advanced cryo-EM sample preparation techniques and which reduce or eliminate exposure of the sample on the grid to atmosphere and elevated temperatures. These methods and devices will also significantly reduce handling time and complexities associated with cryo-EM sample preparation.
    Type: Application
    Filed: January 13, 2022
    Publication date: July 14, 2022
    Inventors: Michael Scott WESTPHALL, Joshua Jacques COON
  • Publication number: 20220057902
    Abstract: The present invention provides a platform that enables codeless generation of online mass spectrometry data exploration portals. The platform facilitates upload of generic spreadsheets containing processed mass spectrometry results (e.g., peak tables) and enables on-the-fly hierarchical organization of data. Following data upload, platform users can select individual visualizations to add to their custom web portal from a menu of options. Based on these selections, a complete webpage is constructed with all associated functionality embedded. These custom web portals can then be shared with collaborators and other researchers at the discretion of the creator via a developed user permissions sharing scheme.
    Type: Application
    Filed: June 28, 2021
    Publication date: February 24, 2022
    Inventors: Nicholas William KWIECIEN, Michael Scott WESTPHALL, Joshua Jacques COON
  • Publication number: 20210156832
    Abstract: The present invention provides reagents for instrumentation quality control and methods of use thereof. In particular, sets of peptides or other molecules are provided for evaluating the performance of instruments with mass spectrometry (MS) and/or liquid chromatography (LC) functionalities.
    Type: Application
    Filed: January 27, 2021
    Publication date: May 27, 2021
    Inventors: Joshua Jacques Coon, Michael M. Rosenblatt, Marjeta Urh
  • Patent number: 10908135
    Abstract: The present invention provides reagents for instrumentation quality control and methods of use thereof. In particular, sets of peptides or other molecules are provided for evaluating the performance of instruments with mass spectrometry (MS) and/or liquid chromatography (LC) functionalities.
    Type: Grant
    Filed: August 23, 2019
    Date of Patent: February 2, 2021
    Assignee: Promega Corporation
    Inventors: Joshua Jacques Coon, Michael M. Rosenblatt, Marjeta Urh
  • Patent number: 10900939
    Abstract: The present invention provides reagents for instrumentation quality control and methods of use thereof. In particular, sets of peptides or other molecules are provided for evaluating the performance of instruments with mass spectrometry (MS) and/or liquid chromatography (LC) functionalities.
    Type: Grant
    Filed: February 14, 2019
    Date of Patent: January 26, 2021
    Assignee: Promega Corporation
    Inventors: Joshua Jacques Coon, Michael M. Rosenblatt, Marjeta Urh
  • Publication number: 20190376939
    Abstract: The present invention provides reagents for instrumentation quality control and methods of use thereof. In particular, sets of peptides or other molecules are provided for evaluating the performance of instruments with mass spectrometry (MS) and/or liquid chromatography (LC) functionalities.
    Type: Application
    Filed: August 23, 2019
    Publication date: December 12, 2019
    Inventors: Joshua Jacques Coon, Michael M. Rosenblatt, Marjeta Urh
  • Publication number: 20190242860
    Abstract: The present invention provides reagents for instrumentation quality control and methods of use thereof. In particular, sets of peptides or other molecules are provided for evaluating the performance of instruments with mass spectrometry (MS) and/or liquid chromatography (LC) functionalities.
    Type: Application
    Filed: February 14, 2019
    Publication date: August 8, 2019
    Inventors: Joshua Jacques Coon, Michael M. Rosenblatt, Marjeta Urh
  • Patent number: 10247711
    Abstract: The present invention provides reagents for instrumentation quality control and methods of use thereof. In particular, sets of peptides or other molecules are provided for evaluating the performance of instruments with mass spectrometry (MS) and/or liquid chromatography (LC) functionalities.
    Type: Grant
    Filed: February 13, 2014
    Date of Patent: April 2, 2019
    Assignee: Promega Corporation
    Inventors: Joshua Jacques Coon, Michael M. Rosenblatt, Marjeta Urh
  • Publication number: 20190034047
    Abstract: The present invention provides a platform that enables codeless generation of online mass spectrometry data exploration portals. The platform facilitates upload of generic spreadsheets containing processed mass spectrometry results (e.g., peak tables) and enables on-the-fly hierarchical organization of data. Following data upload, platform users can select individual visualizations to add to their custom web portal from a menu of options. Based on these selections, a complete webpage is constructed with all associated functionality embedded. These custom web portals can then be shared with collaborators and other researchers at the discretion of the creator via a developed user permissions sharing scheme.
    Type: Application
    Filed: July 30, 2018
    Publication date: January 31, 2019
    Inventors: Nicholas William KWIECIEN, Michael Scott WESTPHALL, Joshua Jacques COON
  • Patent number: 9625470
    Abstract: A method of identifying a related peak set from MS1 spectra data is provided. An intensity peak is selected from MS1 spectra data generated for a sample by a tandem mass spectrometer. A peak location is identified for the selected intensity peak. An intensity score is calculated from the MS1 spectra data for each of a plurality of possible related peak locations based on an intensity value associated with each of the plurality of possible related peak locations. Whether or not any of the plurality of possible related peak locations forms a related peak set is determined based on the calculated intensity score for each of the plurality of possible related peak locations.
    Type: Grant
    Filed: May 7, 2013
    Date of Patent: April 18, 2017
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: Joshua Jacques Coon, Michael Scott Westphall, Derek James Bailey
  • Patent number: 9620348
    Abstract: An integrated mass spectrometer electrospray emitter and fluorescence detector allows improved volumetric measurements of separate components from a liquid chromatography column by improving correlation between the readings of these instruments and reducing dead volume and sample size requirements.
    Type: Grant
    Filed: June 26, 2013
    Date of Patent: April 11, 2017
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: Jason Dale Russell, Joshua Jacques Coon, Ryan Tyler Hilger, Lloyd Michael Smith, Daniel T. Ladror, Michael Robert Shortreed, Mark Andrew Scalf
  • Publication number: 20140336951
    Abstract: A method of identifying a related peak set from MS1 spectra data is provided. An intensity peak is selected from MS1 spectra data generated for a sample by a tandem mass spectrometer. A peak location is identified for the selected intensity peak. An intensity score is calculated from the MS1 spectra data for each of a plurality of possible related peak locations based on an intensity value associated with each of the plurality of possible related peak locations. Whether or not any of the plurality of possible related peak locations forms a related peak set is determined based on the calculated intensity score for each of the plurality of possible related peak locations.
    Type: Application
    Filed: May 7, 2013
    Publication date: November 13, 2014
    Applicant: Wisconsin Alumni Research Foundation
    Inventors: Joshua Jacques Coon, Michael Scott Westphall, Derek James Bailey
  • Publication number: 20140230517
    Abstract: The present invention provides reagents for instrumentation quality control and methods of use thereof. In particular, sets of peptides or other molecules are provided for evaluating the performance of instruments with mass spectrometry (MS) and/or liquid chromatography (LC) functionalities.
    Type: Application
    Filed: February 13, 2014
    Publication date: August 21, 2014
    Applicant: Promega Corporation
    Inventors: Joshua Jacques Coon, Michael M. Rosenblatt, Marjeta Urh
  • Publication number: 20130292581
    Abstract: An integrated mass spectrometer electrospray emitter and fluorescence detector allows improved volumetric measurements of separate components from a liquid chromatography column by improving correlation between the readings of these instruments and reducing dead volume and sample size requirements.
    Type: Application
    Filed: June 26, 2013
    Publication date: November 7, 2013
    Inventors: Jason Dale Russell, Joshua Jacques Coon, Ryan Tyler Hilger, Lloyd Michael Smith, Daniel T. Ladror, Michael Robert Shortreed, Mark Andrew Scalf
  • Patent number: 8506803
    Abstract: An integrated mass spectrometer electrospray emitter and fluorescence detector allows improved volumetric measurements of separate components from a liquid chromatography column by improving correlation between the readings of these instruments and reducing dead volume and sample size requirements.
    Type: Grant
    Filed: March 1, 2011
    Date of Patent: August 13, 2013
    Assignee: Wisconsin Alumni Research Foundation
    Inventors: Jason Dale Russell, Joshua Jacques Coon, Ryan Tyler Hilger, Lloyd Michael Smith, Daniel T. Ladror, Michael Robert Shortreed, Mark Andrew Scalf
  • Publication number: 20120223225
    Abstract: An integrated mass spectrometer electrospray emitter and fluorescence detector allows improved volumetric measurements of separate components from a liquid chromatography column by improving correlation between the readings of these instruments and reducing dead volume and sample size requirements.
    Type: Application
    Filed: March 1, 2011
    Publication date: September 6, 2012
    Inventors: Jason Dale Russell, Joshua Jacques Coon, Ryan Tyler Hilger, Lloyd Michael Smith, Daniel T. Ladror, Michael Robert Shortreed, Mark Andrew Scalf