Patents by Inventor Juan Ugalde

Juan Ugalde has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 11987841
    Abstract: Embodiments of a method and/or system (e.g., for improved single molecule sequencing, etc.) can include preparing a set of unique molecular identifier (UMI)-based molecules associated with a set of target nucleic acid sequences; facilitating generation of (e.g., generating, etc.) a set of tagged nucleic acid molecules based on the set of UMI-based molecules and a set of nucleic acid molecules corresponding to (e.g., including, etc.) the set of target nucleic acid sequences; and/or facilitating (e.g., performing, etc.) single molecule sequencing with the set of tagged nucleic acid molecules.
    Type: Grant
    Filed: October 9, 2018
    Date of Patent: May 21, 2024
    Assignee: Psomagen, Inc.
    Inventors: Zachary Apte, Jessica Richman, Daniel Almonacid, Eduardo Morales, Luis Leon, Sara W. Bird, Juan Ugalde
  • Patent number: 11941451
    Abstract: A system and method are disclosed for orchestrating the execution of computing tasks. An orchestration engine can receive task requests over a network from a plurality of process engines. The process engines may correspond to respective edge or field devices that are remotely located as compared to the orchestration engine. Each task request may indicate at least one task requirement for executing a respective computing task. A plurality of computing instances that have available computing resources can be selected from a set of computing instances. A predicted runtime can be generated for each of the computing tasks. In an example, based on the predicted runtimes, task requirements, available computing resources, and associated network conditions, a schedule and allocation scheme are determined by the orchestration engine.
    Type: Grant
    Filed: August 30, 2019
    Date of Patent: March 26, 2024
    Assignee: SIEMENS AKTIENGESELLSCHAFT
    Inventors: Ines Ugalde Diaz, Martin Sehr, Juan L. Aparicio Ojea, Michael Unkelbach
  • Patent number: 11001900
    Abstract: Embodiments of a method and/or system for characterizing one or more female reproductive system-related conditions can include determining a microorganism dataset associated with a set of subjects; and/or performing a characterization process associated with the one or more female reproductive system-related conditions, based on the microorganism dataset, where performing the characterization process can additionally or alternatively include performing a female reproductive system-related characterization process for the one or more female reproductive system-related conditions, and/or determining one or more therapies.
    Type: Grant
    Filed: August 28, 2018
    Date of Patent: May 11, 2021
    Assignee: PSOMAGEN, INC.
    Inventors: Zachary Apte, Elisabeth Bik, Sara W. Bird, Luis E. Leon, Pamela A. Nieto, Victor Alegria-Mera, Cristian Bravo, Juan P. Cardenas, Paulo Covarrubias, Sarah L. Gupta, Kira Harman, Juan Jimenez, Felipe Melis-Arcos, Camila F. Navas, Harold Nunez, Eduardo Olivares, Nicolas Ordenes-Aenishanslins, Francisco J. Ossandon, Ignacio Varas, Patricia Vera-Wolf, Donna Marie B. Hongo, Laurens Kraal, Nathaniel A. Walton, Amanda Morton, Juan P. Bustamante, Kwasi Addae, Graham Gass, Katia Soto-Liebe, Juan A. Ugalde, Eduardo H. Morales, Daniel Almonacid, Jessica Richman
  • Patent number: 10789334
    Abstract: Embodiments of a method and system for microbial pharmacogenomics can include: a sample handling system operable to collect containers including biological samples from a set of users, the handling system including a sequencing system operable to determine microorganism sequences from the biological samples; a microbiome characterization system operable to: determine microbiome pharmacogenomics data based on the microorganism sequences, collect supplementary data associated with the antibiotics-associated condition for the set of users, and transform the supplementary data and features extracted from the microbiome pharmacogenomics data into a characterization model associated with the antibiotics-associated condition; and a treatment system operable to promote a treatment to the user for the antibiotics-associated condition based on characterizing user biological material with the characterization model in relation to the antibiotics-associated condition.
    Type: Grant
    Filed: July 13, 2017
    Date of Patent: September 29, 2020
    Assignee: PSOMAGEN, INC.
    Inventors: Zachary Apte, Jessica Richman, Daniel Almonacid, Inti Pedroso, Juan Ugalde, Rodrigo Ortiz
  • Publication number: 20200299763
    Abstract: Embodiments of a method and/or system (e.g., for improved single molecule sequencing, etc.) can include preparing a set of unique molecular identifier (UMI)-based molecules associated with a set of target nucleic acid sequences; facilitating generation of (e.g., generating, etc.) a set of tagged nucleic acid molecules based on the set of UMI-based molecules and a set of nucleic acid molecules corresponding to (e.g., including, etc.) the set of target nucleic acid sequences; and/or facilitating (e.g., performing, etc.) single molecule sequencing with the set of tagged nucleic acid molecules.
    Type: Application
    Filed: October 9, 2018
    Publication date: September 24, 2020
    Inventors: Zachary Apte, Jessica Richman, Daniel Almonacid, Eduardo Morales, Luis Leon, Sara W. Bird, Juan Ugalde
  • Publication number: 20200202979
    Abstract: Embodiments of a method and/or system (e.g., for nasal-related characterization) can include determining a microorganism dataset associated with a set of subjects; and/or performing a characterization process based on the microorganism dataset, where performing the characterization process can additionally or alternatively include performing a nasal-related characterization process, and/or determining one or more therapies, such as for one or more nasal-related conditions.
    Type: Application
    Filed: September 6, 2018
    Publication date: June 25, 2020
    Inventors: Zachary Apte, Jessica Richman, Daniel Almonacid, Juan Ugalde, Patricia Vera-Wolf, Sandro Valenzuela
  • Publication number: 20190136310
    Abstract: Embodiments of a method and/or system (e.g., for improved single molecule sequencing, etc.) can include preparing a set of unique molecular identifier (UMI)-based molecules associated with a set of target nucleic acid sequences; facilitating generation of (e.g., generating, etc.) a set of tagged nucleic acid molecules based on the set of UMI-based molecules and a set of nucleic acid molecules corresponding to (e.g., including, etc.) the set of target nucleic acid sequences; and/or facilitating (e.g., performing, etc.) single molecule sequencing with the set of tagged nucleic acid molecules.
    Type: Application
    Filed: October 9, 2018
    Publication date: May 9, 2019
    Inventors: Zachary Apte, Jessica Richman, Daniel Almonacid, Eduardo Morales, Luis Leon, Sara W. Bird, Juan Ugalde
  • Publication number: 20190078142
    Abstract: Embodiments of a method and/or system for characterizing one or more female reproductive system-related conditions can include determining a microorganism dataset associated with a set of subjects; and/or performing a characterization process associated with the one or more female reproductive system-related conditions, based on the microorganism dataset, where performing the characterization process can additionally or alternatively include performing a female reproductive system-related characterization process for the one or more female reproductive system-related conditions, and/or determining one or more therapies.
    Type: Application
    Filed: August 28, 2018
    Publication date: March 14, 2019
    Inventors: Zachary Apte, Elisabeth Bik, Sara W. Bird, Luis E. Leon, Pamela A. Nieto, Victor Alegria-Mera, Cristian Bravo, Juan P. Cardenas, Paulo Covarrubias, Sarah L. Gupta, Kira Harman, Juan Jimenez, Felipe Melis-Arcos, Camila F. Navas, Harold Nunez, Eduardo Olivares, Nicolas Ordenes-Aenishanslins, Francisco J. Ossandon, Ignacio Varas, Patricia Vera-Wolf, Donna Marie B. Hongo, Laurens Kraal, Nathaniel A. Walton, Amanda Morton, Juan P. Bustamante, Kwasi Addae, Graham Gass, Katia Soto-Liebe, Juan A. Ugalde, Eduardo H. Morales, Daniel Almonacid, Jessica Richman
  • Publication number: 20190019575
    Abstract: Embodiments of a method and/or system (e.g., for nasal-related characterization) can include determining a microorganism dataset associated with a set of subjects; and/or performing a characterization process based on the microorganism dataset, where performing the characterization process can additionally or alternatively include performing a nasal-related characterization process, and/or determining one or more therapies, such as for one or more nasal-related conditions.
    Type: Application
    Filed: September 6, 2018
    Publication date: January 17, 2019
    Inventors: Zachary Apte, Jessica Richman, Daniel Almonacid, Juan Ugalde, Patricia Vera-Wolf, Sandro Valenzuela
  • Publication number: 20170308669
    Abstract: Embodiments of a method and system for microbial pharmacogenomics can include: a sample handling system operable to collect containers including biological samples from a set of users, the handling system including a sequencing system operable to determine microorganism sequences from the biological samples; a microbiome characterization system operable to: determine microbiome pharmacogenomics data based on the microorganism sequences, collect supplementary data associated with the antibiotics-associated condition for the set of users, and transform the supplementary data and features extracted from the microbiome pharmacogenomics data into a characterization model associated with the antibiotics-associated condition; and a treatment system operable to promote a treatment to the user for the antibiotics-associated condition based on characterizing user biological material with the characterization model in relation to the antibiotics-associated condition.
    Type: Application
    Filed: July 13, 2017
    Publication date: October 26, 2017
    Inventors: Zachary Apte, Jessica Richman, Daniel Almonacid, Inti Pedroso, Juan Ugalde, Rodrigo Ortiz
  • Patent number: 8207324
    Abstract: The present invention makes known an array of nucleotidic sequences for rapidly and simultaneously identifying the presence of certain genes that codify proteins with relevant activities in biotechnology present in a microbiological sample, and the method with which this array is used in the identification of the above mentioned genes. Specifically speaking, genes that codify for proteins relevant in the biofilm formation, in CO2 fixation, in energetic metabolism, for chemiotaxis and mobility, in iron oxidizing, in nitrogen metabolism, in sulfur assimilation, and in oxidation/reduction of sulphide compounds, are identified. This array of nucleotidic sequences is presented as a useful tool in biotechnology whenever evaluating the quality of a microbiological community is required.
    Type: Grant
    Filed: March 13, 2008
    Date of Patent: June 26, 2012
    Assignee: Biosigma S.A.
    Inventors: Katia Nicole Ehrenfeld Stolzenbach, Juan Ugalde, AndrĂ©s Octavio Aravena Duarte, Nicolas Loira, Alejandro Eduardo Maass SepĂșlveda, Pilar A. Parada Valdecantos, Ricardo Badilla Ohlbaum
  • Publication number: 20090105085
    Abstract: The present invention makes known an array of nucleotididc sequences for rapidly and simultaneously identifying the presence of certain genes that codify proteins with activities relevant in biotechnology, present in a microbiological sample, and the method for using this array in the identification of the said genes. Specifically, genes that codify for proteins relevant in Biofilm formation, in CO2 fixation, in Energetic metabolism, for chemiotaxis and mobility, in iron oxidization, in nitrogen metabolism, in Sulfur assimilation, and in oxidation/reduction of sulfide compounds. This array of nucleotidic sequences is presented as a useful tool in biotechnology in all cases requiring an evaluation of the quality of a microbiological community.
    Type: Application
    Filed: March 13, 2008
    Publication date: April 23, 2009
    Applicant: BIOSIGMA S.A.
    Inventors: Katia Nicole Ehrenfeld Stolzenbach, Juan Ugalde, Andres Octavio Aravena Duarte, Nicolas Loira, Alejandro Eduardo Maass Sepulveda, Pilar A. Parada Valdecantos, Ricardo Badilla Ohlbaum
  • Publication number: 20060153868
    Abstract: A Brucella bacterium is modified by partial or complete deletion of the pgm gene, rendering the bacterium incapable of synthesizing a key enzyme in the metabolism of bacterial sugars. A live vaccine for immunization, prophylaxis or treatment of brucellosis comprises such a bacterium, either lyophilized or in a pharmaceutical vehicle. Nucleotide sequence fragments having the aforementioned deletion are disclosed, with methods for making them.
    Type: Application
    Filed: October 28, 2004
    Publication date: July 13, 2006
    Inventors: Juan Ugalde, Diego Comerci, Rodolfo Ugalde, Vito Del Vecchio