Patents by Inventor Kazunori Ikebukuro

Kazunori Ikebukuro has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 9683238
    Abstract: Disclosed is providing a novel VEGF-binding aptamer whose affinity to VEGF is higher than those of known VEGF-binding aptamers. By an in silico maturation method starting from a known VEGF-binding aptamer, 4 kinds of aptamers whose affinities to VEGF are higher than that of the known VEGF-binding aptamer were prepared. By linking two molecules of an obtained aptamer to each other via a linker, an aptamer having an even higher affinity to VEGF was obtained. The polynucleotide of the present invention contains the base sequence of any one of SEQ ID NOs:1 to 4, and binds to vascular endothelial growth factor.
    Type: Grant
    Filed: December 12, 2013
    Date of Patent: June 20, 2017
    Assignees: National University Corporation Tokyo University of Agriculture and Technology, JNC Corporation
    Inventors: Kazunori Ikebukuro, Yoshihiko Nonaka
  • Patent number: 9238816
    Abstract: An aptamer having a G-quartet structure and being at least one selected from the group consisting of the following polynucleotides, the aptamer having a binding ability to an amyloid protein oligomer: (1) a polynucleotide comprising a base sequence represented by any one of SEQ ID NO:1 to SEQ ID NO:18; (2) a polynucleotide comprising a base sequence that includes at least four sets of at least two consecutive guanosine nucleotides and in which one or several bases has been deleted, substituted, or added in a base sequence represented by any one of SEQ ID NO:18; and (3) a polynucleotide that is a multimer including the polynucleotide of (1) or (2) as a structural unit.
    Type: Grant
    Filed: February 20, 2012
    Date of Patent: January 19, 2016
    Assignee: NATIONAL UNIVERSITY CORPORATION TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY
    Inventors: Kazunori Ikebukuro, Kaori Tsukakoshi, Koji Sode
  • Publication number: 20150376620
    Abstract: Disclosed is providing, a novel VEGF-binding aptamer whose affinity to VEGF is higher than those of known VEGF-binding aptamers. By a in silico maturation method starting from a known VEGF-binding aptamer, 4 kinds of aptamers whose affinities to VEGF are higher than that of the known VEGF-binding aptamer were prepared. By linking two molecules of an obtained aptamer to each other via a linker, an aptamer having an even higher affinity to VEGF was obtained. The polynucleotide of the present invention contains the base sequence of any one of SEQ ID NOs:1 to 4, and binds to vascular endothelial growth factor.
    Type: Application
    Filed: December 12, 2013
    Publication date: December 31, 2015
    Applicants: NATIONAL UNIVERSITY CORPORATION TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY, JNC CORPORATION
    Inventors: Kazunori IKEBUKURO, Yoshihiko NONAKA
  • Patent number: 8981075
    Abstract: The present invention provides an aptamer that binds to prostate-specific antigen (PSA), the aptamer including: a preceding region having a random polynucleotide sequence consisting of from 1 to 10 nucleotides; a first region, at a 3? end of the preceding region, consisting of nnnnCT wherein each n is independently selected from A, T, G and C; a second region consisting of nnCTTT wherein each n is independently selected from A, T, G and C, and at least one part of the second region is complementary to the first region; and a third region positioned between the first region and the second region and consisting of a random polynucleotide sequence having from 3 to 30 nucleotides.
    Type: Grant
    Filed: July 2, 2010
    Date of Patent: March 17, 2015
    Assignee: National University Corporation Tokyo University of Agriculture and Technology
    Inventor: Kazunori Ikebukuro
  • Patent number: 8962271
    Abstract: In one form, a fructosyl peptidyl oxidase derived from a budding yeast Phaeosphaeria nodorum for assaying a glycated protein in a sample is provided. The fructosyl peptidyl oxidase has higher activity toward fructosyl valine as well as fructosyl valyl histidine, and may be useful in assaying HbA1c with higher sensitivity and specificity. Still, other forms include unique methods, techniques, systems and devices involving a fructosyl peptidyl oxidase.
    Type: Grant
    Filed: March 27, 2014
    Date of Patent: February 24, 2015
    Assignees: Roche Diagnostics Operations, Inc., Ultizyme International, Ltd.
    Inventors: Kazunori Ikebukuro, Sode Koji
  • Publication number: 20140227728
    Abstract: In one form, a fructosyl peptidyl oxidase derived from a budding yeast Phaeosphaeria nodorum for assaying a glycated protein in a sample is provided. The fructosyl peptidyl oxidase has higher activity toward fructosyl valine as well as fructosyl valyl histidine, and may be useful in assaying HbA1c with higher sensitivity and specificity. Still, other forms include unique methods, techniques, systems and devices involving a fructosyl peptidyl oxidase.
    Type: Application
    Filed: March 27, 2014
    Publication date: August 14, 2014
    Applicants: Roche Diagnostics Operations, Inc., Ultizyme International, LTD
    Inventors: Kazunori Ikebukuro, Sode Koji
  • Patent number: 8721853
    Abstract: In one form, a fructosyl peptidyl oxidase derived from a budding yeast Phaeosphaeria nodorum for assaying a glycated protein in a sample is provided. The fructosyl peptidyl oxidase has higher activity toward fructosyl valine as well as fructosyl valyl histidine, and may be useful in assaying HbA1c with higher sensitivity and specificity. Still, other forms include unique methods, techniques, systems and devices involving a fructosyl peptidyl oxidase.
    Type: Grant
    Filed: February 3, 2012
    Date of Patent: May 13, 2014
    Assignees: Roche Diagnostics Operations, Inc., Ultizyme International, Ltd
    Inventors: Kazunori Ikebukuro, Koji Sode
  • Publication number: 20140072986
    Abstract: An aptamer having a G-quartet structure and being at least one selected from the group consisting of the following polynucleotides, the aptamer having a binding ability to an amyloid protein oligomer: (1) a polynucleotide comprising a base sequence represented by any one of SEQ ID NO:1 to SEQ ID NO:18; (2) a polynucleotide comprising a base sequence that includes at least four sets of at least two consecutive guanosine nucleotides and in which one or several bases has been deleted, substituted, or added in a base sequence represented by any one of SEQ ID NO:18; and (3) a polynucleotide that is a multimer including the polynucleotide of (1) or (2) as a structural unit.
    Type: Application
    Filed: February 20, 2012
    Publication date: March 13, 2014
    Applicant: NATIONAL UNIVERSITY CORPORATION TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY
    Inventors: Kazunori Ikebukuro, Kaori Tsukakoshi, Koji Sode
  • Publication number: 20140011207
    Abstract: The present invention provides an aptamer that binds to prostate-specific antigen (PSA), the aptamer including: a preceding region having a random polynucleotide sequence consisting of from 1 to 10 nucleotides; a first region, at a 3? end of the preceding region, consisting of nnnnCT wherein each n is independently selected from A, T, G and C; a second region consisting of nnCTTT wherein each n is independently selected from A, T, G and C, and at least one part of the second region is complementary to the first region; and a third region positioned between the first region and the second region and consisting of a random polynucleotide sequence having from 3 to 30 nucleotides.
    Type: Application
    Filed: July 2, 2010
    Publication date: January 9, 2014
    Applicant: National University Corporation Tokyo University of Agriculture and Technology
    Inventor: Kazunori Ikebukuro
  • Patent number: 8497083
    Abstract: In one form, a mutant fructosyl amino acid oxidase modified at an amino acid residue involved in a proton relay system is provided. The mutant fructosyl amino acid oxidase has reduced oxidase activity while substantially maintaining its dehydrogenase activity. Other forms include an assay device and assay method for measuring glycated protein. Still, other forms include unique methods, techniques, systems and devices involving a mutant fructosyl amino acid oxidase.
    Type: Grant
    Filed: February 3, 2012
    Date of Patent: July 30, 2013
    Assignees: Roche Diagnostics Operations, Inc.
    Inventors: Kazunori Ikebukuro, Sode Koji
  • Patent number: 8492084
    Abstract: Disclosed are a method for assaying a target substance in a sample and an apparatus for the method. The method can specifically assay the target substance in the sample without using any antibody against the target substance. The assaying method includes simultaneously or successively bringing a labeled aptamer, the target substance in the sample and a solid phase into contact together, and then measuring the label of the aptamer which has not been bound on the solid phase. The labeled aptamer has a property of binding to the target substance. The solid phase carries an oligonucleotide immobilized on it in an excess amount relative to the target substance. The oligonucleotide is hybridizable with the labeled aptamer when the labeled aptamer is in a state that it is not bound to the target substance, but is not hybridizable with the labeled aptamer when the labeled aptamer is in a state that it is bound to the target substance.
    Type: Grant
    Filed: January 24, 2007
    Date of Patent: July 23, 2013
    Inventors: Koji Sode, Kazunori Ikebukuro, Hiroki Yamazaki
  • Patent number: 8367329
    Abstract: The invention is to easily detect an interaction between nucleic acid and protein with high sensitivity without the need of sample labeling with a fluorescent molecule or sample anchorage onto a metal thin-film. As means for it, the presence or absence of occurrence of the interaction between nucleic acid and protein in a sample (S) is detected in an optical manner. Specifically, the sample (S) is irradiated with excitation rays (Le) and with measuring rays (L2) for measuring a photothermal effect produced in the sample (S) through the irradiation with the excitation rays (Le). A measurement signal for the photothermal effect in the sample (S) by the excitation rays (Le) is produced on the basis of any phase change of the measuring rays (L2). A temporal variation in the measurement signal is used for making a judgment on the presence or absence of any occurrence of interaction between nucleic acid and protein.
    Type: Grant
    Filed: June 14, 2007
    Date of Patent: February 5, 2013
    Assignees: National University Corporation Tokyo University of Agriculture and Technology, Kobe Steel, Ltd.
    Inventors: Kazunori Ikebukuro, Ryo Katayama, Eiji Takahashi, Hiroyuki Takamatsu
  • Patent number: 8310676
    Abstract: An object of the present invention is to detect a small biomolecule in a sample using simple and inexpensive equipment. To achieve this, the small biomolecule in a sample S is detected optically. Specifically, the sample S containing an aptamer capable of interacting with the small biomolecule is irradiated with an excitation light Le and irradiated with a measurement light L2 for measuring the photothermal effect produced in the sample S by the irradiation with the excitation light Le. The photothermal effect induced in the sample S by the excitation light Le is measured from the phase change in the measurement light L2, and the presence or absence of the interaction between the biomolecule and the aptamer is assessed based on the temporal variation in the measurement signal.
    Type: Grant
    Filed: July 3, 2008
    Date of Patent: November 13, 2012
    Assignee: Kobe Steel, Ltd.
    Inventors: Kazunori Ikebukuro, Ryo Katayama, Eiji Takahashi
  • Patent number: 8247197
    Abstract: An aptamer-probe complex for detecting the presence of a target molecule is disclosed. The complex of the present invention contains an aptamer moiety which is able to bind to an indicator protein and change the properties of the indicator protein, and a probe moiety which is able to bind to a target molecule, wherein the aptamer moiety and the probe moiety are combined in such a manner that the binding mode between the aptamer moiety and the indicator protein changes when the probe moiety binds to the target molecule. A target molecule can be detected with combination of an aptamer which binds to a certain protein, and a probe which binds to the target molecule, utilizing the properties of that protein as an indicator.
    Type: Grant
    Filed: September 1, 2010
    Date of Patent: August 21, 2012
    Assignee: Techno Medica Co., Ltd.
    Inventors: Koji Sode, Kazunori Ikebukuro
  • Publication number: 20120208226
    Abstract: In one form, a mutant fructosyl amino acid oxidase modified at an amino acid residue involved in a proton relay system is provided. The mutant fructosyl amino acid oxidase has reduced oxidase activity while substantially maintaining its dehydrogenase activity. Other forms include an assay device and assay method for measuring glycated protein. Still, other forms include unique methods, techniques, systems and devices involving a mutant fructosyl amino acid oxidase.
    Type: Application
    Filed: February 3, 2012
    Publication date: August 16, 2012
    Inventors: Kazunori Ikebukuro, Sode Koji
  • Publication number: 20120202235
    Abstract: In one form, a fructosyl peptidyl oxidase derived from a budding yeast Phaeosphaeria nodorum for assaying a glycated protein in a sample is provided. The fructosyl peptidyl oxidase has higher activity toward fructosyl valine as well as fructosyl valyl histidine, and may be useful in assaying HbA1c with higher sensitivity and specificity. Still, other forms include unique methods, techniques, systems and devices involving a fructosyl peptidyl oxidase.
    Type: Application
    Filed: February 3, 2012
    Publication date: August 9, 2012
    Inventors: Kazunori Ikebukuro, Sode Koji
  • Patent number: 8143004
    Abstract: A method for measuring a test substance whereby the test substance in a sample can be specifically measured without using an antibody against the test substance; an aptamer molecule used therefor; and a method for creating the aptamer are disclosed. An aptamer capable of hybridizing with an oligonucleotide when it is bound to a test substance, but is incapable of hybridizing with the oligonucleotide when it is not bound to the test substance, is utilized. The aptamer is brought into contact with a sample, and the aptamer bound to the test substance is brought into contact with an immobilized oligonucleotide which hybridizes with the aptamer, to bind the aptamer to a solid phase, followed by measurement of the aptamer immobilized on the solid phase.
    Type: Grant
    Filed: September 27, 2007
    Date of Patent: March 27, 2012
    Assignee: National University Corporation Tokyo University of Agriculture and Technology
    Inventors: Kazunori Ikebukuro, Koji Sode
  • Publication number: 20110045484
    Abstract: An aptamer-probe complex for detecting the presence of a target molecule is disclosed. The complex of the present invention contains an aptamer moiety which is able to bind to an indicator protein and change the properties of the indicator protein, and a probe moiety which is able to bind to a target molecule, wherein the aptamer moiety and the probe moiety are combined in such a manner that the binding mode between the aptamer moiety and the indicator protein changes when the probe moiety binds to the target molecule. A target molecule can be detected with combination of an aptamer which binds to a certain protein, and a probe which binds to the target molecule, utilizing the properties of that protein as an indicator.
    Type: Application
    Filed: September 1, 2010
    Publication date: February 24, 2011
    Applicant: Techno Medica Co., Ltd.
    Inventors: Koji SODE, Kazunori Ikebukuro
  • Publication number: 20110007317
    Abstract: An object of the present invention is to detect a small biomolecule in a sample using simple and inexpensive equipment. To achieve this, the small biomolecule in a sample S is detected optically. Specifically, the sample S containing an aptamer capable of interacting with the small biomolecule is irradiated with an excitation light Le and irradiated with a measurement light L2 for measuring the photothermal effect produced in the sample S by the irradiation with the excitation light Le. The photothermal effect induced in the sample S by the excitation light Le is measured from the phase change in the measurement light L2, and the presence or absence of the interaction between the biomolecule and the aptamer is assessed based on the temporal variation in the measurement signal.
    Type: Application
    Filed: July 3, 2008
    Publication date: January 13, 2011
    Applicant: Kabushiki Kaisha Kobe Seiko Sho (Kobe Steel, Ltd.
    Inventors: Kazunori Ikebukuro, Ryo Katayama, Eiji Takahashi
  • Patent number: 7807351
    Abstract: An aptamer-probe complex for detecting the presence of a target molecule is disclosed. The complex of the present invention contains an aptamer moiety which is able to bind to an indicator protein and change the properties of the indicator protein, and a probe moiety which is able to bind to a target molecule, wherein the aptamer moiety and the probe moiety are combined in such a manner that the binding mode between the aptamer moiety and the indicator protein changes when the probe moiety binds to the target molecule. A target molecule can be detected with combination of an aptamer which binds to a certain protein, and a probe which binds to the target molecule, utilizing the properties of that protein as an indicator.
    Type: Grant
    Filed: November 22, 2004
    Date of Patent: October 5, 2010
    Assignee: Techno Medica Co., Ltd.
    Inventors: Koji Sode, Kazunori Ikebukuro