Abstract: A flight control system for an aircraft having a multi-functional flight control surface. The aircraft has at least one multi-functional flight control surface formed by a sequence of flaps. The shape of each multi-functional flight control surface may be configured by a flight control to simultaneously adjust a trajectory of the aircraft in two or more of a pitch direction, a roll direction, and a yaw direction. The flight control for operating said the multi-functional flight control surface responds to both pilot commands and machine-generated commands. The machine-generated commands configure the shape of the surface of each multi-functional flight control surface in real-time based, at least in part, upon a set of flight objectives comprising: (a) minimizing drag of the aircraft, (b) aeroelastic modal suppression for the aircraft, and (c) maneuver load alleviation in the aircraft.