Abstract: A fuel cell system having an air quality sensor suite includes a fuel cell having an anode and a cathode, a fuel source providing a fuel flow, a fuel flow rate sensor having a fuel flow rate sensor output, a fuel flow control device, a fuel oxidizer flow conduit, a first mixing region coupled to the fuel source and the fuel oxidizer flow conduit, an anode chamber coupled to the anode, a combustion oxidizer flow conduit, a second mixing region coupled to the combustion oxidizer flow conduit, and at least one oxidizer flow rate sensor having an oxidizer flow rate sensor output. The system further includes at least one oxidizer pump, an air quality sensor having an air quality sensor output, and a control system coupled to the fuel flow rate sensor output, the oxidizer flow rate sensor output, and the air quality sensor output.