Patents by Inventor Mark Kokoris
Mark Kokoris has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).
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Publication number: 20250207112Abstract: Recombinant DPO4-type DNA polymerase variants with amino acid substitutions that confer modified properties upon the polymerase for improved single molecule sequencing applications are provided. Such properties may include enhanced binding and accurate incorporation of bulky nucleotide analog substrates into daughter strands and the like. Also provided are compositions comprising such DPO4 variants and nucleotide analogs, as well as nucleic acids which encode the polymerases with the aforementioned phenotypes.Type: ApplicationFiled: March 10, 2025Publication date: June 26, 2025Inventors: Mark Kokoris, Marc Prindle, Gregory Scott Thiessen, Alexander Isaac Lehmann, Drew Goodman, Aaron Jacobs, John Chase
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Publication number: 20240383938Abstract: Phosphoramidate esters and related nucleotide analogs useful in polynucleotide sequencing techniques, and synthetic methods for preparing those compounds, are disclosed. These compounds include nucleotide phosphoramidates analogs that are modified on the alpha-phosphate to enable attachment of a variety of application-specific substituents such as tether molecules.Type: ApplicationFiled: July 30, 2024Publication date: November 21, 2024Inventors: Mark Kokoris, John Tabone, Melud Nabavi, Aaron Jacobs
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Publication number: 20230313157Abstract: Recombinant DPO4-type DNA polymerase variants with amino acid substitutions that confer modified properties upon the polymerase for improved single molecule sequencing applications are provided. Such properties may include enhanced binding and accurate incorporation of bulky nucleotide analog substrates into daughter strands and the like. Also provided are compositions comprising such DPO4 variants and nucleotide analogs, as well as nucleic acids which encode the polymerases with the aforementioned phenotypes.Type: ApplicationFiled: November 16, 2022Publication date: October 5, 2023Inventors: Mark Kokoris, Marc Prindle, Gregory Scott Thiessen, Alexander Isaac Lehmann, Drew Goodman, Aaron Jacobs, John Chase
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Patent number: 11530392Abstract: Recombinant DPO4-type DNA polymerase variants with amino acid substitutions that confer modified properties upon the polymerase for improved single molecule sequencing applications are provided. Such properties may include enhanced binding and accurate incorporation of bulky nucleotide analog substrates into daughter strands and the like. Also provided are compositions comprising such DPO4 variants and nucleotide analogs, as well as nucleic acids which encode the polymerases with the aforementioned phenotypes.Type: GrantFiled: December 10, 2018Date of Patent: December 20, 2022Assignee: Stratos Genomics, Inc.Inventors: Mark Kokoris, Marc Prindle, Gregory Scott Thiessen, Alexander Isaac Lehmann, Drew Goodman, Aaron Jacobs, John Chase
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Publication number: 20210163903Abstract: Recombinant DPO4-type DNA polymerase variants with amino acid substitutions that confer modified properties upon the polymerase for improved single molecule sequencing applications are provided. Such properties may include enhanced binding and accurate incorporation of bulky nucleotide analog substrates into daughter strands and the like. Also provided are compositions comprising such DPO4 variants and nucleotide analogs, as well as nucleic acids which encode the polymerases with the aforementioned phenotypes.Type: ApplicationFiled: December 10, 2018Publication date: June 3, 2021Inventors: Mark KOKORIS, Marc PRINDLE, Gregory Scott Thiessen, Alexander Isaac LEHMANN, Drew GOODMAN, Aaron JACOBS, John CHASE
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Patent number: 8772017Abstract: Integrated microfluidic cartridges for nucleic acid extraction, amplification, and detection from clinical samples are disclosed. The devices are single-entry, sanitary, and disposable. The devices enable simplex or multiplex nucleic acid target detection, as for example: assay panels for multiple infectious agents, or assay panels for cancerous cell types. Methods for use of microfluidic cartridges in a fully automated, pneumatically controlled apparatus are also disclosed.Type: GrantFiled: June 8, 2012Date of Patent: July 8, 2014Assignee: Micronics, Inc.Inventors: C. Frederick Battrell, John Gerdes, John R. Williford, Denise Maxine Hoekstra, Wayne L. Breidford, Stephen Mordue, John Clemmens, Melud Nabavi, Mark Kokoris
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Publication number: 20120329142Abstract: Integrated microfluidic cartridges for nucleic acid extraction, amplification, and detection from clinical samples are disclosed. The devices are single-entry, sanitary, and disposable. The devices enable simplex or multiplex nucleic acid target detection, as for example: assay panels for multiple infectious agents, or assay panels for cancerous cell types. Methods for use of microfluidic cartridges in a fully automated, pneumatically controlled apparatus are also disclosed.Type: ApplicationFiled: June 8, 2012Publication date: December 27, 2012Applicant: MICRONICS, INC.Inventors: C. Frederick BATTRELL, John GERDES, John R. WILLIFORD, Denise Maxine HOEKSTRA, Wayne L. BREIDFORD, Stephen MORDUE, John CLEMMENS, Melud NABAVI, Mark KOKORIS
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Patent number: 8222023Abstract: Integrated microfluidic cartridges for nucleic acid extraction, amplification, and detection from clinical samples are disclosed. The devices are single-entry, sanitary, and disposable. The devices enable simplex or multiplex nucleic acid target detection, as for example: assay panels for multiple infectious agents, or assay panels for cancerous cell types. Methods for use of microfluidic cartridges in a fully automated, pneumatically controlled apparatus are also disclosed.Type: GrantFiled: September 10, 2008Date of Patent: July 17, 2012Assignee: Micronics, Inc.Inventors: C. Frederick Battrell, John Gerdes, John R. Williford, Denise Maxine Hoekstra, Wayne L. Breidford, Stephen Mordue, John Clemmens, Melud Nabavi, Mark Kokoris
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Publication number: 20090148847Abstract: Disclosed is an improvement in methods for nucleic acid and immunological bioassays. The methods comprise a step for “sweeping” paramagnetic bead: target molecule complexes so as to capture them with an affinity capture agent on a test pad by moving a magnetic force field from outside to inside the test pad area so as to bring into contact the paramagnetic complexes with the capture agent, while sweeping any unbound paramagnetic material off the test pad by moving the magnetic field from inside to outside the test pad area. Surprisingly, the paramagnetic complexes are rapidly affinity-extracted from the moving magnetic field.Type: ApplicationFiled: September 3, 2008Publication date: June 11, 2009Applicant: MICRONICS, INC.Inventors: Mark Kokoris, Melud Nabavi, Wayne L. Breidford, John Gerdes, Stephen Mordue, C. Frederick Battrell
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Publication number: 20090148933Abstract: Integrated microfluidic cartridges for nucleic acid extraction, amplification, and detection from clinical samples are disclosed. The devices are single-entry, sanitary, and disposable. The devices enable simplex or multiplex nucleic acid target detection, as for example: assay panels for multiple infectious agents, or assay panels for cancerous cell types. Methods for use of microfluidic cartridges in a fully automated, pneumatically controlled apparatus are also disclosed.Type: ApplicationFiled: September 10, 2008Publication date: June 11, 2009Applicant: Micronics, Inc.Inventors: C. Frederick Battrell, John Gerdes, John R. Williford, Denise Maxine Hoekstra, Wayne L. Breidford, Stephen Mordue, John Clemmens, Melud Nabavi, Mark Kokoris
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Publication number: 20060246575Abstract: The present invention relates to microfluidic devices and methods for detecting rare cells. The disclosed microfluidic devices and methods integrate and automate sample preparation, cell labeling, cell sorting and enrichment, and DNA/RNA analysis of sorted cells.Type: ApplicationFiled: January 13, 2006Publication date: November 2, 2006Applicant: Micronics, Inc.Inventors: Christy Lancaster, C. Battrell, Jason Capodanno, John Gerdes, Mark Kokoris, Melud Nabavi, Stephen Mordue, Robert McRuer, John Clemmens, Wayne Breidford