Patents by Inventor Matthew DiPietro
Matthew DiPietro has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).
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Publication number: 20250034637Abstract: Described herein are variants of alpha-hemolysin having at least one amino acid substitution at H35G, E111N, M113A, and/or K147N in the mature, wild-type alpha-hemolysin amino acid sequence. In certain examples, the variant may have a substitution at E111S, M113S, T145S, K147S, or L135I in the mature alpha-hemolysin amino acid sequence. The ?-hemolysin variants may also include a substitution at H144A and/or a series of glycine residues spanning residues 127 to 131 of the mature, wild-type alpha hemolysin. Also provided are nanopore assemblies including the alpha-hemolysin variants, the assembly having an increased nanopore lifetime. Further, provided are variants that, in addition to providing increased lifetime, provide a decreased time-to-thread. Hence, the variants provided herein both increase nanopore lifetime and improve efficiency and accuracy of DNA sequencing reactions using nanopores comprising the variants.Type: ApplicationFiled: August 8, 2024Publication date: January 30, 2025Applicant: Roche Sequencing Solutions, Inc.Inventors: Mark Ambroso, Timothy Craig, Matthew DiPietro, Corissa Harris, Marshall Porter
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Publication number: 20240317818Abstract: The present disclosure provides variant OmpG polypeptides, compositions comprising the OmpG variant polypeptides, and methods for using the variant OmpG polypeptides as nanopores for determining the sequence of single stranded nucleic acids. The variant OmpG nanopores reduce the ionic current noise versus the parental OmpG polypeptide from which they are derived and thereby enable sequencing of polynucleotides with single nucleotide resolution. The reduced ionic current noise also provides for the use of these OmpG nanopore variants in other single molecule sensing applications, e.g., protein sequencing.Type: ApplicationFiled: June 5, 2024Publication date: September 26, 2024Applicant: Roche Sequencing Solutions, Inc.Inventors: Cynthia CECH, Tim CRAIG, Christos TZITZILONIS, Alexander YANG, Liv JENSEN, Charlotte YANG, Corissa HARRIS, Matthew DIPIETRO, Dhruti DALAL
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Patent number: 12091714Abstract: Described herein are variants of alpha-hemolysin having at least one amino acid substitution at H35G, E111N, M113A, and/or K147N in the mature, wild-type alpha-hemolysin amino acid sequence. In certain examples, the variant may have a substitution at E111S, M113S, T145S, K147S, or L135I in the mature alpha-hemolysin amino acid sequence. The ?-hemolysin variants may also include a substitution at H144A and/or a series of glycine residues spanning residues 127 to 131 of the mature, wild-type alpha hemolysin. Also provided are nanopore assemblies including the alpha-hemolysin variants, the assembly having an increased nanopore lifetime. Further, provided are variants that, in addition to providing increased lifetime, provide a decreased time-to-thread. Hence, the variants provided herein both increase nanopore lifetime and improve efficiency and accuracy of DNA sequencing reactions using nanopores comprising the variants.Type: GrantFiled: February 21, 2023Date of Patent: September 17, 2024Assignee: Roche Sequencing Solutions, Inc.Inventors: Mark Ambroso, Timothy Craig, Matthew DiPietro, Corissa Harris, Marshall Porter
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Patent number: 12037366Abstract: The present disclosure provides variant OmpG polypeptides, compositions comprising the OmpG variant polypeptides, and methods for using the variant OmpG polypeptides as nanopores for determining the sequence of single stranded nucleic acids. The variant OmpG nanopores reduce the ionic current noise versus the parental OmpG polypeptide from which they are derived and thereby enable sequencing of polynucleotides with single nucleotide resolution. The reduced ionic current noise also provides for the use of these OmpG nanopore variants in other single molecule sensing applications, e.g., protein sequencing.Type: GrantFiled: August 15, 2023Date of Patent: July 16, 2024Assignee: Roche Sequencing Solutions, Inc.Inventors: Cynthia Cech, Tim Craig, Christos Tzitzilonis, Alexander Yang, Liv Jensen, Charlotte Yang, Corissa Harris, Matthew Dipietro, Dhruti Dalal
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Publication number: 20240010688Abstract: The present disclosure provides variant OmpG polypeptides, compositions comprising the OmpG variant polypeptides, and methods for using the variant OmpG polypeptides as nanopores for determining the sequence of single stranded nucleic acids. The variant OmpG nanopores reduce the ionic current noise versus the parental OmpG polypeptide from which they are derived and thereby enable sequencing of polynucleotides with single nucleotide resolution. The reduced ionic current noise also provides for the use of these OmpG nanopore variants in other single molecule sensing applications, e.g., protein sequencing.Type: ApplicationFiled: August 15, 2023Publication date: January 11, 2024Applicant: Roche Sequencing Solutions, Inc.Inventors: Cynthia CECH, Tim CRAIG, Christos TZITZILONIS, Alexander Yang, Liv JENSEN, Charlotte YANG, Corissa HARRIS, Matthew DIPIETRO, Dhruti DALAL
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Publication number: 20230332222Abstract: Described herein are variants of alpha-hemolysin having at least one amino acid substitution at H35G, E111N, M113A, and/or K147N in the mature, wild-type alpha-hemolysin amino acid sequence. In certain examples, the variant may have a substitution at E111S, M113S, T145S, K147S, or L135I in the mature alpha-hemolysin amino acid sequence. The ?-hemolysin variants may also include a substitution at H144A and/or a series of glycine residues spanning residues 127 to 131 of the mature, wild-type alpha hemolysin. Also provided are nanopore assemblies including the alpha-hemolysin variants, the assembly having an increased nanopore lifetime. Further, provided are variants that, in addition to providing increased lifetime, provide a decreased time-to-thread. Hence, the variants provided herein both increase nanopore lifetime and improve efficiency and accuracy of DNA sequencing reactions using nanopores comprising the variants.Type: ApplicationFiled: February 21, 2023Publication date: October 19, 2023Applicant: Roche Sequencing Solutions, Inc.Inventors: Mark Ambroso, Timothy Craig, Matthew DiPietro, Corissa Harris, Marshall Porter
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Patent number: 11767348Abstract: The present disclosure provides variant OmpG polypeptides, compositions comprising the OmpG variant polypeptides, and methods for using the variant OmpG polypeptides as nanopores for determining the sequence of single stranded nucleic acids. The variant OmpG nanopores reduce the ionic current noise versus the parental OmpG polypeptide from which they are derived and thereby enable sequencing of polynucleotides with single nucleotide resolution. The reduced ionic current noise also provides for the use of these OmpG nanopore variants in other single molecule sensing applications, e.g., protein sequencing.Type: GrantFiled: July 10, 2020Date of Patent: September 26, 2023Assignee: Roche Sequencing Solutions, Inc.Inventors: Cynthia Cech, Tim Craig, Christos Tzitzilonis, Alexander Yang, Liv Jensen, Charlotte Yang, Corissa Harris, Matthew Dipietro, Dhruti Dalal
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Patent number: 11613778Abstract: Described herein are variants of alpha-hemolysin having at least one amino acid substitution at H35G, E111N, M113A, and/or K147N in the mature, wild-type alpha-hemolysin amino acid sequence. In certain examples, the variant may have a substitution at E111S, M113S, T145S, K147S, or L135I in the mature alpha-hemolysin amino acid sequence. The ?-hemolysin variants may also include a substitution at H144A and/or a series of glycine residues spanning residues 127 to 131 of the mature, wild-type alpha hemolysin. Also provided are nanopore assemblies including the alpha-hemolysin variants, the assembly having an increased nanopore lifetime. Further, provided are variants that, in addition to providing increased lifetime, provide a decreased time-to-thread. Hence, the variants provided herein both increase nanopore lifetime and improve efficiency and accuracy of DNA sequencing reactions using nanopores comprising the variants.Type: GrantFiled: January 25, 2021Date of Patent: March 28, 2023Assignee: Roche Sequencing Solutions, Inc.Inventors: Mark Ambroso, Timothy Craig, Matthew DiPietro, Corissa Harris, Marshall Porter
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Publication number: 20220291192Abstract: A consumable device used in a nanopore based sequencing system can include a nanopore chip, a flow cell with one or more flow channels, and a flow cell cover. A fluidic interface can be used to deliver fluid to the flow cell. The fluid interface can include a flow cell boss and the flow cell cover can include a receptacle for receiving the flow cell boss. A dispense tip can be used to introduce fluid into the flow cell through the flow cell boss.Type: ApplicationFiled: September 22, 2020Publication date: September 15, 2022Inventors: Matthew DiPietro, Damion Engelbart, Andrew Liu, William Nielsen, Janusz B. Wojtowicz, Robert A. Yuan
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Publication number: 20210230683Abstract: Described herein are variants of alpha-hemolysin having at least one amino acid substitution at H35G, E111N, M113A, and/or K147N in the mature, wild-type alpha-hemolysin amino acid sequence. In certain examples, the variant may have a substitution at E111S, M113S, T145S, K147S, or L1351 in the mature alpha-hemolysin amino acid sequence. The ?-hemolysin variants may also include a substitution at H144A and/or a series of glycine residues spanning residues 127 to 131 of the mature, wild-type alpha hemolysin. Also provided are nanopore assemblies including the alpha-hemolysin variants, the assembly having an increased nanopore lifetime. Further, provided are variants that, in addition to providing increased lifetime, provide a decreased time-to-thread. Hence, the variants provided herein both increase nanopore lifetime and improve efficiency and accuracy of DNA sequencing reactions using nanopores comprising the variants.Type: ApplicationFiled: January 25, 2021Publication date: July 29, 2021Applicant: Roche Sequencing Solutions, Inc.Inventors: Mark Ambroso, Timothy Craig, Matthew DiPietro, Corissa Harris, Marshall Porter
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Patent number: 10934582Abstract: Described herein are variants of alpha-hemolysin having at least one amino acid substitution at H35G, E111N, M113A, and/or K147N in the mature, wild-type alpha-hemolysin amino acid sequence. In certain examples, the variant may have a substitution at E111S, M113S, T145S, K147S, or L1351 in the mature alpha-hemolysin amino acid sequence. The ?-hemolysin variants may also include a substitution at H144A and/or a series of glycine residues spanning residues 127 to 131 of the mature, wild-type alpha hemolysin. Also provided are nanopore assemblies including the alpha-hemolysin variants, the assembly having an increased nanopore lifetime. Further, provided are variants that, in addition to providing increased lifetime, provide a decreased time-to-thread. Hence, the variants provided herein both increase nanopore lifetime and improve efficiency and accuracy of DNA sequencing reactions using nanopores comprising the variants.Type: GrantFiled: July 23, 2019Date of Patent: March 2, 2021Assignee: Roche Sequencing Solutions, Inc.Inventors: Mark Ambroso, Timothy Craig, Matthew DiPietro, Corissa Harris, Marshall Porter
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Publication number: 20200392191Abstract: The present disclosure provides variant OmpG polypeptides, compositions comprising the OmpG variant polypeptides, and methods for using the variant OmpG polypeptides as nanopores for determining the sequence of single stranded nucleic acids. The variant OmpG nanopores reduce the ionic current noise versus the parental OmpG polypeptide from which they are derived and thereby enable sequencing of polynucleotides with single nucleotide resolution. The reduced ionic current noise also provides for the use of these OmpG nanopore variants in other single molecule sensing applications, e.g., protein sequencing.Type: ApplicationFiled: July 10, 2020Publication date: December 17, 2020Applicant: Roche Sequencing Solutions, Inc.Inventors: Cynthia CECH, Tim CRAIG, Christos TZITZILONIS, Alexander YANG, Liv JENSEN, Charlotte YANG, Corissa HARRIS, Matthew DIPIETRO, Dhruti DALAL
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Patent number: 10752658Abstract: The present disclosure provides variant OmpG polypeptides, compositions comprising the OmpG variant polypeptides, and methods for using the variant OmpG polypeptides as nanopores for determining the sequence of single stranded nucleic acids. The variant OmpG nanopores reduce the ionic current noise versus the parental OmpG polypeptide from which they are derived and thereby enable sequencing of polynucleotides with single nucleotide resolution. The reduced ionic current noise also provides for the use of these OmpG nanopore variants in other single molecule sensing applications, e.g., protein sequencing.Type: GrantFiled: September 20, 2016Date of Patent: August 25, 2020Assignee: ROCHE SEQUENCING SOLUTIONS, INC.Inventors: Cynthia Cech, Tim Craig, Christos Tzitzilonis, Alexander Yang, Liv Jensen, Charlotte Yang, Corissa Harris, Matthew DiPietro, Dhruti Dalal
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Publication number: 20180002750Abstract: Described herein are variants of alpha-hemolysin having at least one amino acid substitution at H35G, E111N, M113A, and/or K147N in the mature, wild-type alpha-hemolysin amino acid sequence. In certain examples, the variant may have a substitution at E111S, M113S, T145S, K147S, or L135I in the mature alpha-hemolysin amino acid sequence. The ?-hemolysin variants may also include a substitution at H144A and/or a series of glycine residues spanning residues 127 to 131 of the mature, wild-type alpha hemolysin. Also provided are nanopore assemblies including the alpha-hemolysin variants, the assembly having an increased nanopore lifetime. Further, provided are variants that, in addition to providing increased lifetime, provide a decreased time-to-thread. Hence, the variants provided herein both increase nanopore lifetime and improve efficiency and accuracy of DNA sequencing reactions using nanopores comprising the variants.Type: ApplicationFiled: June 29, 2017Publication date: January 4, 2018Inventors: Mark Ambroso, Timothy Craig, Matthew DiPietro, Corissa Harris, Marshall Porter
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Patent number: 5257057Abstract: A supply magazine for use in an apparatus for removing individual film that has been placed within a light-tight pouch having a leader secured to the leading edge. The magazine has a base which receives and retains a stack of sheet film within the light-tight pouch, and a cover secured to the base which can be rotated between a closed position and an open position. A take-up spindle is rotatably secured within the base for winding of the pouch thereon. The improvement comprises a lever arm for biasing the leader toward the spindle which cooperates with hook provided on the spindle when the cover is in the closed position. The lever arm includes a clamp pad which has a configuration which forms a resistive wall section in the leader when the magazine is in the closed position such that when the spindle is rotated, the hooks will engage the leader at the resistive wall section allowing the pouch to be wound around the spindle.Type: GrantFiled: June 22, 1992Date of Patent: October 26, 1993Assignee: Eastman Kodak CompanyInventors: Matthew DiPietro, Thomas J. Kausch, Vincent B. Dethier
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Patent number: 5220374Abstract: A magazine has a space for receiving a package containing a stack of film sheets enclosed within a bag. The bag is removable from the stack of sheets while the package is within the magazine by exerting a pulling force on the bag. Means are provided within the magazine for flexing the stack of film sheets in response to pulling of the bag from the stack, thus loosening adjacent sheets in the film stack that may be stuck together and facilitating removal of the sheets seriatim.Type: GrantFiled: May 22, 1991Date of Patent: June 15, 1993Assignee: Eastman Kodak CompanyInventor: Matthew DiPietro
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Patent number: 5197090Abstract: A package for a stack of film sheets has a pouch that is sealed around the stack of sheets and a leader that is secured to the pouch and engageable with a spindle in a magazine so that rotation of the spindle can pull the pouch from around the stack of sheets. The pouch and leader are formed of different polyolefin materials with the pouch comprising a material having a low coefficient of friction to enable the pouch to be easily pulled around the stack of sheets while the leader comprises a material having a high coefficient of friction to facilitate engagement with the spindle and pulling the pouch uniformly.Type: GrantFiled: December 6, 1991Date of Patent: March 23, 1993Assignee: Eastman Kodak CompanyInventors: Matthew DiPietro, Thomas J. Kausch, Vincent B. Dethier
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Patent number: 5123536Abstract: A carrier is provided for a package containing a stack of film sheets enclosed by a bag. The carrier has a first wall positionable on one side of the stack of sheets and a second wall positionable on the opposite side of the stack of sheets. The carrier has an edge wall connected to the first wall and the second wall. The edge wall has an opening at the center portion thereof, and two spaced end portions separated by the opening. The carrier allows the stack of film sheets and the carrier to flex in the area of the opening in the carrier edge wall to reduce the tendency of the sheets to stick together and thereby improve reliability of feeding of the sheets seriatim from the stack.Type: GrantFiled: June 7, 1991Date of Patent: June 23, 1992Assignee: Eastman Kodak CompanyInventor: Matthew DiPietro
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Patent number: 5101229Abstract: A light lock is formed by a channel with spaced walls, with the channel being open at one side. A light absorbing material is positioned in the channel and has bristles projecting toward the opening. A flange projects through the opening toward the material but is spaced from the bristles. The channel can be formed on one portion of a magazine, cassette or the like, for light tight materials such as photographic film, and the flange can be formed on another portion of such a magazine or cassette.Type: GrantFiled: December 31, 1990Date of Patent: March 31, 1992Assignee: Eastman Kodak CompanyInventor: Matthew DiPietro
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Patent number: 5055869Abstract: A supply magazine receives a package having a stack of film sheets within a light-tight bag. When the magazine is closed, a the bag is driven from the magazine so that the sheets can be removed for exposure and development. The bag is removed at the rear end of the magazine and fed toward the front of the magazine so that it is accessible to the operator and to avoid having the bag fall into an associated printer/processor and out of the reach of the operator.Type: GrantFiled: July 25, 1990Date of Patent: October 8, 1991Assignee: Eastman Kodak CompanyInventor: Matthew DiPietro