Patents by Inventor Matthew Kellinger

Matthew Kellinger has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20210139981
    Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
    Type: Application
    Filed: January 22, 2021
    Publication date: May 13, 2021
    Inventors: Sinan ARSLAN, Chunhong ZHOU, Molly Min HE, Matthew KELLINGER, Adeline Huizhen MAH, Michael PREVITE, Lei SUN
  • Publication number: 20210139884
    Abstract: Provided herein are compositions and methods for the incorporation of unnatural nucleotides using mutant polymerases, such as reverse transcriptases. Further provided herein are methods of detection and sequencing of polynucleotide sequences. In some aspects, the compositions and methods are used enhance the efficiency and speed of detecting nucleotide bases. The methods and compositions described herein may further reduce time, cost, or scale of devices for next generation sequencing platforms.
    Type: Application
    Filed: December 11, 2020
    Publication date: May 13, 2021
    Inventors: Matthew KELLINGER, Molly HE, Tyler LOPEZ
  • Publication number: 20210123098
    Abstract: Provided are methods and systems for analyzing nucleic acids in a biological sample in a manner that retains the spatial and/or cellular origin of the nucleic acids within the biological sample. Compositions and kits are also provided that enable the methods and systems of the instant disclosure.
    Type: Application
    Filed: January 8, 2021
    Publication date: April 29, 2021
    Inventors: Michael PREVITE, Molly HE, Junhua ZHAO, Hui Zhen MAH, Chunhong ZHOU, Sinan ARSLAN, Matthew KELLINGER, Lorenzo BERTI, Steve CHEN
  • Publication number: 20210121882
    Abstract: Flow cell devices, cartridges, and systems are described that provide reduced manufacturing complexity, lowered consumable costs, and flexible system throughput for nucleic acid sequencing and other chemical or biological analysis applications. The flow cell device can include a capillary flow cell device or a microfluidic flow cell device.
    Type: Application
    Filed: October 28, 2020
    Publication date: April 29, 2021
    Inventors: Minghao GUO, Leon Zilun ZHANG, Chunhong ZHOU, Matthew KELLINGER, Michael PREVITE
  • Publication number: 20210123911
    Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
    Type: Application
    Filed: October 5, 2020
    Publication date: April 29, 2021
    Inventors: Sinan ARSLAN, Molly HE, Matthew KELLINGER, Jake LEVIEUX, Michael PREVITE, Junhua ZHAO, Su ZHANG, Tyler LOPEZ
  • Patent number: 10982280
    Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
    Type: Grant
    Filed: April 22, 2020
    Date of Patent: April 20, 2021
    Assignee: ELEMENT BIOSCIENCES, INC.
    Inventors: Sinan Arslan, Chunhong Zhou, Molly Min He, Matthew Kellinger, Adeline Huizhen Mah, Michael Previte, Lei Sun
  • Publication number: 20210072234
    Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
    Type: Application
    Filed: July 22, 2020
    Publication date: March 11, 2021
    Inventors: Sinan Arslan, Molly HE, Matthew KELLINGER, Jake LEVIEUX, Michael PREVITE, Junhua ZHAO, Su ZHANG
  • Publication number: 20210040534
    Abstract: Methods and formulations for preparing low non-specific binding surfaces are described, and the prepared surface can provide improved performance for nucleic acid detection and base calling applications. The surface provides more accurate nucleic acid detection, enhanced contrast to noise ratio, and better data collection.
    Type: Application
    Filed: October 14, 2020
    Publication date: February 11, 2021
    Inventors: Chunhong ZHOU, Sinan ARSLAN, Molly Min HE, Matthew KELLINGER, Adeline Huizhen MAH, Michael PREVITE, Lei SUN
  • Patent number: 10876148
    Abstract: Methods and formulations for preparing low non-specific binding surfaces are described, and the prepared surface can provide improved performance for nucleic acid detection and base calling applications. The surface provides more accurate nucleic acid detection, enhanced contrast to noise ratio, and better data collection.
    Type: Grant
    Filed: January 10, 2020
    Date of Patent: December 29, 2020
    Assignee: ELEMENT BIOSCIENCES, INC.
    Inventors: Chunhong Zhou, Sinan Arslan, Molly Min He, Matthew Kellinger, Adeline Huizhen Mah, Michael Previte, Lei Sun
  • Publication number: 20200370113
    Abstract: Compositions and methods comprising the use of polymerase-nucleotide conjugates for nucleic acid sequencing and analysis applications are described.
    Type: Application
    Filed: June 8, 2020
    Publication date: November 26, 2020
    Inventors: Matthew Kellinger, Michael Previte, Molly He, Tyler Lopez
  • Patent number: 10768173
    Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
    Type: Grant
    Filed: September 23, 2019
    Date of Patent: September 8, 2020
    Assignee: ELEMENT BIOSCIENCES, INC.
    Inventors: Sinan Arslan, Molly He, Matthew Kellinger, Jake Levieux, Michael Previte, Junhua Zhao, Su Zhang
  • Publication number: 20200263230
    Abstract: Methods and formulations for preparing low non-specific binding surfaces are described, and the prepared surface can provide improved performance for nucleic acid detection and base calling applications. The surface provides more accurate nucleic acid detection, enhanced contrast to noise ratio, and better data collection.
    Type: Application
    Filed: January 10, 2020
    Publication date: August 20, 2020
    Inventors: Chunhong ZHOU, Sinan ARSLAN, Molly Min HE, Matthew KELLINGER, Adeline Huizhen MAH, Michael PREVITE, Lei SUN
  • Publication number: 20200248258
    Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
    Type: Application
    Filed: April 22, 2020
    Publication date: August 6, 2020
    Inventors: Sinan ARSLAN, Chunhong ZHOU, Molly Min HE, Matthew KELLINGER, Adeline Huizhen MAH, Michael PREVITE, Lei SUN
  • Publication number: 20200216899
    Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
    Type: Application
    Filed: January 10, 2020
    Publication date: July 9, 2020
    Inventors: Sinan ARSLAN, Chunhong ZHOU, Molly Min HE, Matthew KELLINGER, Adeline Huizhen MAH, Michael PREVITE, Lei SUN
  • Patent number: 10704094
    Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
    Type: Grant
    Filed: January 10, 2020
    Date of Patent: July 7, 2020
    Assignee: ELEMENT BIOSCIENCES, INC.
    Inventors: Sinan Arslan, Chunhong Zhou, Molly Min He, Matthew Kellinger, Adeline Huizhen Mah, Michael Previte, Lei Sun
  • Publication number: 20200182866
    Abstract: Improved system and method are described that utilize surfaces with low non-specific binding supports and formulations for performing solid-phase nucleic acid hybridization and amplification. The system and method described herein provide improved performance for nucleic acid detection and other applications.
    Type: Application
    Filed: January 9, 2020
    Publication date: June 11, 2020
    Inventors: Sinan ARSLAN, Chunhong ZHOU, Molly Min HE, Matthew KELLINGER, Adeline Huizhen MAH, Michael PREVITE, Lei SUN
  • Publication number: 20200179921
    Abstract: Devices having a low non-specific binding surface and formulations for performing solid-phase nucleic acid hybridization and amplification are described that provide improved performance for nucleic acid detection, amplification, and sequencing applications. These devices provide more accurate data collection and more accurate sequence reads.
    Type: Application
    Filed: January 17, 2020
    Publication date: June 11, 2020
    Inventors: Sinan ARSLAN, Chunhong ZHOU, Molly Min HE, Matthew KELLINGER, Adeline Huizhen MAH, Michael PREVITE, Lei SUN
  • Publication number: 20200149095
    Abstract: Low non-specific binding supports and formulations for performing solid-phase nucleic acid hybridization and amplification are described that provide improved performance for nucleic acid detection, amplification, and sequencing applications. These supports exhibit a high Contrast-to Noise Ratio (CNR), facilitating more accurate data collection and more accurate sequence reads.
    Type: Application
    Filed: March 25, 2019
    Publication date: May 14, 2020
    Inventors: Sinan Arslan, Chunhong Zhou, Molly Min He, Matthew Kellinger, Adeline Huizhen Mah, Michael Previte, Lei Sun
  • Publication number: 20200131484
    Abstract: Presented herein are altered polymerase enzymes for improved incorporation of nucleotides and nucleotide analogues, in particular altered polymerases that maintain high fidelity under reduced incorporation times, as well as methods and kits using the same.
    Type: Application
    Filed: October 31, 2019
    Publication date: April 30, 2020
    Applicants: Illumina, Inc., Illumina Singapore Pte. Ltd.
    Inventors: Misha Golynskiy, Seth McDonald, Saurabh Nirantar, Matthew Kellinger, Michael Previte, Sergio Peisajovich, Molly He