Patents by Inventor Matthew Rodesch

Matthew Rodesch has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 10900068
    Abstract: The present invention provides methods and systems for the capture and enrichment of target nucleic acids and analysis of the enriched target nucleic acids. In particular, the present invention provides for the enrichment of targeted sequences in a solution based format.
    Type: Grant
    Filed: September 15, 2017
    Date of Patent: January 26, 2021
    Assignee: Roche Sequencing Solutions, Inc.
    Inventors: Matthew Rodesch, Thomas Albert
  • Publication number: 20180030521
    Abstract: The present invention provides methods and systems for the capture and enrichment of target nucleic acids and analysis of the enriched target nucleic acids. In particular, the present invention provides for the enrichment of targeted sequences in a solution based format.
    Type: Application
    Filed: September 15, 2017
    Publication date: February 1, 2018
    Inventors: Matthew Rodesch, Thomas Albert
  • Patent number: 9790543
    Abstract: The present invention provides methods and systems for the capture and enrichment of target nucleic acids and analysis of the enriched target nucleic acids. In particular, the present invention provides for the enrichment of targeted sequences in a solution based format.
    Type: Grant
    Filed: September 22, 2011
    Date of Patent: October 17, 2017
    Assignee: Roche Sequencing Solutions, Inc.
    Inventors: Matthew Rodesch, Thomas Albert
  • Patent number: 9346892
    Abstract: An oligopeptide microarray and methods for the synthesis thereof are presented. Further presented is a microarray on a solid support comprising at least about 10,000 oligopeptide features per cm2 and preferably at least about 50,000 oligopeptide features per cm2.
    Type: Grant
    Filed: March 13, 2012
    Date of Patent: May 24, 2016
    Assignee: ROCHE NIMBLE GEN, INC.
    Inventors: Tom Albert, Todd Richmond, Matthew Rodesch, Klaus-Peter Stengele, Jochen Buehler, Markus Ott
  • Publication number: 20150377898
    Abstract: The present invention relates to a microarray comprising at least 50,000 oligopeptide features per cm2 where the oligopeptide features represent at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 95%, at least 99%, or 100% of the proteome of a virus or an organism. The present invention further relates to methods for the synthesis of such microarrays and methods of using microarrays comprising at least 50,000 oligopeptide features per cm2. In an embodiment of the invention, the oligopeptide features represent proteins expressed in the same species, wherein the oligopeptide features are presented in a tiling pattern representing at least about 5,000, at least about 10,000, at least about 15,000, at least about 20,000, or at least about 25,000 proteins expressed in a species.
    Type: Application
    Filed: August 27, 2014
    Publication date: December 31, 2015
    Inventors: Tom Albert, Todd Richmond, Matthew Rodesch, Klaus-Peter Stengele, Jochen Buehler
  • Patent number: 8658572
    Abstract: The present invention relates to a microarray comprising at least 50,000 oligopeptide features per cm2 where the oligopeptide features represent at least 50%, 60%, 70%, 80%, 90%, 95%, 99%, or 100% of the proteome of a virus or an organism. The present invention further relates to methods for the synthesis of such microarrays and methods of using microarrays comprising at least 50,000 oligopeptide features per cm2. In an embodiment of the invention, the oligopeptide features represent proteins expressed in the same species, wherein the oligopeptide features are presented in a tiling pattern representing at least about 5,000 to-at least about 25,000 proteins expressed in a species. In some embodiments, the oligopeptide microarray features represent proteins expressed in the same species, wherein the microarray features are present in a tiling pattern that represents at least about 5,000 to at least about 50,000 expressed proteins.
    Type: Grant
    Filed: March 13, 2012
    Date of Patent: February 25, 2014
    Assignee: Roche NimbleGen, Inc.
    Inventors: Tom Albert, Todd Richmond, Matthew Rodesch, Klaus-Peter Stengele, Jochen Bühler
  • Patent number: 8383338
    Abstract: The present invention provides methods and compositions for the enrichment of target nucleic acids in a microarray system. In particular, the present invention provides methods and compositions for uniform enrichment of target nucleic acid molecules in a microarray format. The present invention also provides for intentionally non-uniform enrichment among target nucleic acid molecules.
    Type: Grant
    Filed: February 23, 2009
    Date of Patent: February 26, 2013
    Assignee: Roche NimbleGen, Inc.
    Inventors: Jacob Kitzman, Todd Richmond, Mark D'Ascenzo, Thomas Albert, Matthew Rodesch, Jeffrey Jeddeloh, Christina Middle
  • Publication number: 20120245057
    Abstract: The present invention relates to a microarray comprising at least 50,000 oligopeptide features per cm2 where the oligopeptide features represent at least 50%, 60%, 70%, 80%, 90%, 95%, 99%, or 100% of the proteome of a virus or an organism. The present invention further relates to methods for the synthesis of such microarrays and methods of using microarrays comprising at least 50,000 oligopeptide features per cm2. In an embodiment of the invention, the oligopeptide features represent proteins expressed in the same species, wherein the oligopeptide features are presented in a tiling pattern representing at least about 5,000 to-at least about 25,000 proteins expressed in a species. In some embodiments, the oligopeptide microarray features represent proteins expressed in the same species, wherein the microarray features are present in a tiling pattern that represents at least about 5,000 to at least about 50,000 expressed proteins.
    Type: Application
    Filed: March 13, 2012
    Publication date: September 27, 2012
    Inventors: Tom Albert, Todd Richmond, Matthew Rodesch, Klaus-Peter Stengele, Jochen Buhler
  • Publication number: 20120238477
    Abstract: An oligopeptide microarray and methods for the synthesis thereof are presented. Further presented is a microarray on a solid support comprising at least about 10,000 oligopeptide features per cm2 and preferably at least about 50,000 oligopeptide features per cm2.
    Type: Application
    Filed: March 13, 2012
    Publication date: September 20, 2012
    Inventors: Tom Albert, Todd Richmond, Matthew Rodesch, Klause-Peter Stengele, Jochen Bühler, Markus Ott
  • Publication number: 20120046175
    Abstract: The present invention provides methods and systems for the capture and enrichment of target nucleic acids and analysis of the enriched target nucleic acids. In particular, the present invention provides for the enrichment of targeted sequences in a solution based format.
    Type: Application
    Filed: September 22, 2011
    Publication date: February 23, 2012
    Inventors: Matthew Rodesch, Thomas Albert
  • Publication number: 20100331204
    Abstract: The present invention provides methods and systems for targeted nucleic acid sequence enrichment in a sample. In particular, the present invention provides for enriching for targeted nucleic acid sequences during hybridizations in hybridization assays by first depleting non-target nucleic acid sequences.
    Type: Application
    Filed: January 28, 2010
    Publication date: December 30, 2010
    Inventors: Jeff Jeddeloh, Todd Richmond, Matthew Rodesch, Daniel Gerhardt, Paul Marrione, Thomas Albert
  • Publication number: 20100222232
    Abstract: The present invention provides novel methods for reducing the complexity of preferably a genomic sample for further analysis such as direct DNA sequencing, resequencing or SNP calling. The methods use pre-selected immobilized oligonucleotide probes to capture target nucleic acid molecules from a sample containing denatured, fragmented (genomic) nucleic acids for reducing the genetic complexity of the original population of nucleic acid molecules.
    Type: Application
    Filed: April 5, 2010
    Publication date: September 2, 2010
    Inventors: Thomas J. Albert, Roland Green, Todd Richmond, Michael Molla, Jeffrey Jeddeloh, Jason Patrick Affourtit, Mathreyan Srinivasan, Brian Christopher Godwin, Matthew Rodesch
  • Publication number: 20090221438
    Abstract: The present invention provides methods and compositions for the enrichment of target nucleic acids in a microarray system. In particular, the present invention provides methods and compositions for uniform enrichment of target nucleic acid molecules in a microarray format. The present invention also provides for intentionally non-uniform enrichment among target nucleic acid molecules.
    Type: Application
    Filed: February 23, 2009
    Publication date: September 3, 2009
    Applicant: ROCHE NIMBLEGEN, INC.
    Inventors: Jacob Kitzman, Todd Richmond, Mark D'Ascenzo, Thomas Albert, Matthew Rodesch, Jeffrey Jeddeloh, Christina Middle
  • Publication number: 20090105081
    Abstract: The present invention provides methods and systems for the capture and enrichment of target nucleic acids and analysis of the enriched target nucleic acids. In particular, the present invention provides for the enrichment of targeted sequences in a solution based format.
    Type: Application
    Filed: August 20, 2008
    Publication date: April 23, 2009
    Applicant: ROCHE NIMBLEGEN, INC.
    Inventors: Matthew Rodesch, Thomas Albert
  • Publication number: 20080194414
    Abstract: The present invention provides novel methods for reducing the complexity of preferably a genomic sample for further analysis such as direct DNA sequencing, resequencing or SNP calling. The methods use pre-selected immobilized oligonucleotide probes to capture target nucleic acid molecules from a sample containing denatured, fragmented (genomic) nucleic acids for reducing the genetic complexity of the original population of nucleic acid molecules.
    Type: Application
    Filed: January 8, 2008
    Publication date: August 14, 2008
    Inventors: Thomas J. Albert, Roland Green, Todd Richmond, Michael Molla, Jeffrey Jeddeloh, Jason Patrick Affourtit, Mathreyan Srinivasan, Brian Christopher Godwin, Matthew Rodesch