Patents by Inventor Mostafa Ronaghi

Mostafa Ronaghi has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20070264642
    Abstract: The invention is directed to novel methods of multiplexing nucleic acid reactions, including amplification, detection and genotyping. The invention relies on the use of precircle probes that are circularized in the presence of the corresponding target nucleic acids, cleaved, and then amplified.
    Type: Application
    Filed: June 30, 2006
    Publication date: November 15, 2007
    Inventors: Thomas Willis, Paul Hardenbol, Maneesh Jain, Viktor Stolc, Mostafa Ronaghi, Ronald Davis
  • Publication number: 20070178479
    Abstract: The invention is directed to novel methods of multiplexing nucleic acid reactions, including amplification, detection and genotyping. The invention relies on the use of precircle probes that are circularized in the presence of the corresponding target nucleic acids, cleaved, and then amplified.
    Type: Application
    Filed: January 19, 2006
    Publication date: August 2, 2007
    Inventors: Thomas Willis, Paul Hardenbol, Maneesh Jain, Viktor Stolc, Mostafa Ronaghi, Ronald Davis
  • Publication number: 20060275789
    Abstract: The invention is directed to novel methods of multiplexing nucleic acid reactions, including amplification, detection and genotyping. The invention relies on the use of precircle probes that are circularized in the presence of the corresponding target nucleic acids, cleaved, and then amplified.
    Type: Application
    Filed: January 19, 2006
    Publication date: December 7, 2006
    Inventors: Thomas Willis, Paul Hardenbol, Maneesh Jain, Viktor Stolc, Mostafa Ronaghi, Ronald Davis
  • Publication number: 20060252060
    Abstract: The invention is directed to novel methods of multiplexing nucleic acid reactions, including amplification, detection and genotyping. The invention relies on the use of precircle probes that are circularized in the presence of the corresponding target nucleic acids, cleaved, and then amplified.
    Type: Application
    Filed: January 19, 2006
    Publication date: November 9, 2006
    Inventors: Thomas Willis, Paul Hardenbol, Maneesh Jain, Viktor Stolc, Mostafa Ronaghi, Ronald Davis
  • Publication number: 20060008824
    Abstract: Described herein are methods and compositions relating to amplifying nucleic acid. In certain embodiments, the invention provides methods for labeling and amplifying a nucleic acid molecule.
    Type: Application
    Filed: May 19, 2005
    Publication date: January 12, 2006
    Applicant: Leland Stanford Junior University
    Inventors: Mostafa Ronaghi, Foad Mashayekhi
  • Publication number: 20050084851
    Abstract: The method of the invention relates to a method of typing one or more nucleic acid molecules, said method comprising: simultaneously or sequentially performing two or more primer extension reactions, each primer binding at a different predetermined site in said nucleic acid molecule(s), and determining the pattern of nucleotide incorporation to obtain a test pattern for said nucleic acid molecule(s) which is optionally compared with one or more reference patterns to type the said nucleic acid molecule(s).
    Type: Application
    Filed: September 10, 2001
    Publication date: April 21, 2005
    Inventors: Mostafa Ronaghi, Bjorn Ekstorm, Nader Pourmand
  • Patent number: 6858412
    Abstract: The invention is directed to novel methods of multiplexing nucleic acid reactions, including amplification, detection and genotyping. The invention relies on the use of precircle probes that are circularized in the presence of the corresponding target nucleic acids, cleaved, and then amplified.
    Type: Grant
    Filed: October 24, 2001
    Date of Patent: February 22, 2005
    Assignee: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Thomas D. Willis, Paul Hardenbol, Maneesh Jain, Viktor Stolc, Mostafa Ronaghi, Ronald W. Davis
  • Publication number: 20050026180
    Abstract: The invention is directed to novel methods of multiplexing nucleic acid reactions, including amplification, detection and genotyping. The invention relies on the use of precircle probes that are circularized in the presence of the corresponding target nucleic acids, cleaved, and then amplified.
    Type: Application
    Filed: April 15, 2004
    Publication date: February 3, 2005
    Applicant: The Board of Trustees of the Leland Stanford Junior University
    Inventors: Thomas Willis, Paul Hardenbol, Maneesh Jain, Viktor Stolc, Mostafa Ronaghi, Ronald Davis
  • Patent number: 6828100
    Abstract: The present invention relates to a method of identifying a base at a target position in a sample nucleic acid sequence wherein a primer, which hybridizes to the sample nucleic acid immediately adjacent to the target position, is provided and the sample nucleic acid and primer are subjected to a polymerase reaction in the presence of a nucleotide whereby the nucleotide will only become incorporated if it is complementary to the base in the target position, and said incorporation is detected, characterized in that, a single-stranded nucleic acid binding protein is included in the polymerase reaction step.
    Type: Grant
    Filed: December 4, 2001
    Date of Patent: December 7, 2004
    Assignee: Biotage AB
    Inventor: Mostafa Ronaghi
  • Publication number: 20040142330
    Abstract: The present invention provides a method of identifying a base at a target position in a sample nucleic acid sequence, said method comprising: subjecting a primer hybridised to said sample nucleic acid immediately adjacent to the target position, to a polymerase primer extension reaction in the presence of a nucleotide, whereby the nucleotide will only become incorporated if it is complementary to the base in the target position, and determining whether or not said nucleotide is incorporated by detecting whether Ppi is released, the identity of the target base being determined from the identity of any nucleotide incorporated, wherein, where said nucleotide comprises an adenine base, an &agr;-thio triphosphate analogue of said nucleotide is used, ant the Rp isomer of said analogue and/or the degradation products of said analogue are eliminated from the polymerase reaction step.
    Type: Application
    Filed: August 1, 2003
    Publication date: July 22, 2004
    Inventors: Pal Nyren, Mostafa Ronaghi, Annika Tallsjo
  • Publication number: 20040101835
    Abstract: The invention is directed to novel methods of multiplexing nucleic acid reactions, including amplification, detection and genotyping. The invention relies on the use of precircle probes that are circularized in the presence of the corresponding target nucleic acids, cleaved, and then amplified.
    Type: Application
    Filed: October 24, 2001
    Publication date: May 27, 2004
    Inventors: Thomas D. Willis, Paul Hardenbol, Maneesh Jain, Viktor Stolc, Mostafa Ronaghi, Ronald W. Davis
  • Publication number: 20040103040
    Abstract: A system, method and computer program product for an online web-based law community for information sharing, collaboration and vending of services between attorneys and clients. Applications servers (ASs) and database servers (DSs) are provided for the features and functions of permitting clients to investigate attorneys by set factors (including region, jurisdiction, legal practice area, community and external reputation) and permitting attorneys to investigate clients by set factors (including region, industry, payment practices, community and external reputation). The AS/DSs also facilitate client provisioning of legal tasks, engagement of attorneys by clients, online communications between parties (through real-time chats, video, message threads), providing of standard or alternative billing, banking of payments between parties, and management of the progression of work performance and deliverables.
    Type: Application
    Filed: November 27, 2002
    Publication date: May 27, 2004
    Inventors: Mostafa Ronaghi, Cameron H. Tousi
  • Publication number: 20030157499
    Abstract: The present invention provides a method of assessing the amount of target nucleic acid in a sample which comprises co-amplifying the target nucleic acid and at least one competitor nucleic acid molecule wherein each competitor molecule contains a unique discriminatory sequence, and determining the relative amounts of the respective amplicons, characterised in that determination is achieved by detecting a primer extension reaction using each said amplicon as template and a kit for use in such a method.
    Type: Application
    Filed: October 29, 2002
    Publication date: August 21, 2003
    Inventors: Joakim Lundeberg, Mostafa Ronaghi
  • Patent number: 6210891
    Abstract: The present invention provides a method of identifying a base at a target position in a single-stranded sample DNA sequence wherein an extension primer, which hybridizes to the sample DNA immediately adjacent to the target position, is provided and the sample DNA and extension primer are subjected to a polymerization reaction in the presence of a deoxynucleotide or dideoxynucleotide, whereby the deoxynucleotide or dideoxynucleotide will only become incorporated and release pyrophosphate if it is complementary to the base in the target position. Release of pyrophosphate is detected enzymatically and pyrophosphate detection enzyme(s) are included in the polymerization step.
    Type: Grant
    Filed: July 6, 1999
    Date of Patent: April 3, 2001
    Assignee: Pyrosequencing AB
    Inventors: Pål Nyren, Mathias Uhlen, Mostafa Ronaghi