Patents by Inventor Omer Ad

Omer Ad has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20240118280
    Abstract: Aspects of the disclosure relate to methods and compositions for identifying, isolating, and/or sequencing a target protein or peptide from a sample of proteins or peptides.
    Type: Application
    Filed: June 15, 2023
    Publication date: April 11, 2024
    Applicant: Quantum-Si Incorporated
    Inventors: Omer Ad, Robert E. Boer
  • Publication number: 20230192761
    Abstract: The present disclosure relates to compounds and methods for selective C-terminal functionalization of peptides. In certain embodiments, the compounds have improved water-solubility, and are suitable for use in connection with peptide sequencing methodologies.
    Type: Application
    Filed: June 10, 2022
    Publication date: June 22, 2023
    Applicant: Quantum-Si Incorporated
    Inventors: Haidong Huang, Roger Nani, Omer Ad, Brian Reed, Matthew Dyer, Robert E. Boer
  • Publication number: 20220324910
    Abstract: The present disclosure is related to peptides comprising modified aspartic acid and glutamic acid moieties, methods of making such peptides, and methods of using such modified peptides to selectively direct cleavage of peptide bonds. Selective peptide bond cleavage is advantageous in peptide sequencing applications, such as automated peptide sequencing applications.
    Type: Application
    Filed: March 31, 2022
    Publication date: October 13, 2022
    Applicant: Quantum-Si Incorporated
    Inventors: Omer Ad, Haidong Huang
  • Publication number: 20220306677
    Abstract: Compositions and methods of making hybrid polypeptides and other polymers are disclosed. For example, functionalized tRNA having a functional molecule including a benzoic acid or benzoic acid derivative acylated to the 3? nucleotide of a tRNA are provided. Functionalized tRNA having a functional molecule including a malonic acid or malonic acid derivative acylated to the 3? nucleotide of a tRNA are also provided. Methods of using the functionalized tRNA for making compounds including the functional molecule are also provided. The methods typically include providing or expressing a messenger RNA (mRNA) encoding the target polypeptide in a translation system including one or more functionalized tRNA wherein each functionalized tRNA recognizes at least one codon such that its functional molecule is incorporated into the polypeptide or other polymer during translation. The incorporation of the functional molecule can occur in vitro in a cell-free translation system, or in vivo in a host cell.
    Type: Application
    Filed: June 4, 2020
    Publication date: September 29, 2022
    Inventors: Omer Ad, Kyle S. Hoffman, Andrew G. Cairns, Aaron L. Featherston, Scott J. Miller, Dieter Soll, Alanna Schepartz
  • Publication number: 20220228188
    Abstract: Aspects of this disclosure related to methods, articles, kits, and/or systems for the preparation and/or study of one or more target molecules in a sample. In some embodiments, a target molecule is a peptide, a protein, or a fragment or derivative thereof. Through the use of methods, articles, kits, and/or systems of the instant disclosure, target molecules may, in some embodiment, be more readily sequenced or prepared for sequencing.
    Type: Application
    Filed: January 19, 2022
    Publication date: July 21, 2022
    Applicant: Quantum-Si Incorporated
    Inventors: Michele Millham, Jonathan C. Schultz, Omer Ad, Caixia Lv
  • Publication number: 20220186295
    Abstract: Aspects of the disclosure provide methods of determining molecular barcode content based on binding interactions between a barcode recognition molecule and a molecular barcode. In some aspects, the disclosure relates to methods comprising contacting a molecular barcode with a barcode recognition molecule that binds to one or more sites on the molecular barcode, detecting a series of signal pulses, and determining the barcode content based on a barcode-specific pattern in the series of signal pulses.
    Type: Application
    Filed: December 15, 2021
    Publication date: June 16, 2022
    Applicant: Quantum-Si Incorporated
    Inventors: Omer Ad, Robert E. Boer, Evan McCormack, Brianna Leigh Haining, Thomas Raymond Thurston, Brian Reed
  • Publication number: 20220186297
    Abstract: Methods and devices for ultrasensitive detection of target molecules (e.g., target nucleic acids or target proteins) from a biological sample are provided herein. In some embodiments, methods and devices enable ultrasensitive determination of the concentration of target molecules.
    Type: Application
    Filed: December 15, 2021
    Publication date: June 16, 2022
    Applicant: Quantum-Si Incorporated
    Inventors: Brian Reed, An Li, Omer Ad, Haidong Huang, Guojun Chen
  • Patent number: 11358981
    Abstract: The present disclosure relates to compounds and methods for selective C-terminal functionalization of peptides. In certain embodiments, the compounds have improved water-solubility, and are suitable for use in connection with peptide sequencing methodologies.
    Type: Grant
    Filed: January 20, 2021
    Date of Patent: June 14, 2022
    Assignee: Quantum-Si Incorporated
    Inventors: Haidong Huang, Roger Nani, Omer Ad, Robert E. Boer
  • Publication number: 20210379591
    Abstract: Methods and devices for preparing target molecules (e.g., target nucleic acids or target proteins) from a biological sample are provided herein. In some embodiments, methods and devices involve sample lysis, sample fragmentation, enrichment of target molecule(s), and/or functionalization of target molecule(s).
    Type: Application
    Filed: April 21, 2021
    Publication date: December 9, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Jonathan M. Rothberg, John H. Leamon, Jonathan C. Schultz, Michele Millham, Caixia Lv, Haidong Huang, Roger Nani, Omer Ad, Brian Reed, Matthew Dyer, Robert E. Boer
  • Publication number: 20210354133
    Abstract: Methods and devices for preparing target molecules (e.g., target nucleic acids or target proteins) from a biological sample are provided herein. In some embodiments, methods and devices involve sample lysis, sample fragmentation, enrichment of target molecule(s), and/or functionalization of target molecule(s).
    Type: Application
    Filed: April 21, 2021
    Publication date: November 18, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Jonathan M. Rothberg, John H. Leamon, Jonathan C. Schultz, Michele Millham, Caixia Lv, Haidong Huang, Roger Nani, Omer Ad, Brian Reed, Matthew Dyer, Robert E. Boer
  • Publication number: 20210354134
    Abstract: Methods and devices for preparing target molecules (e.g., target nucleic acids or target proteins) from a biological sample are provided herein. In some embodiments, methods and devices involve sample lysis, sample fragmentation, enrichment of target molecule(s), and/or functionalization of target molecule(s).
    Type: Application
    Filed: April 21, 2021
    Publication date: November 18, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Jonathan M. Rothberg, John H. Leamon, Jonathan C. Schultz, Michele Millham, Caixia Lv, Haidong Huang, Roger Nani, Omer Ad, Brian Reed, Matthew Dyer, Robert E. Boer
  • Publication number: 20210331170
    Abstract: Methods and devices for preparing target molecules (e.g., target nucleic acids or target proteins) from a biological sample are provided herein. In some embodiments, methods and devices involve sample lysis, sample fragmentation, enrichment of target molecule(s), and/or functionalization of target molecule(s).
    Type: Application
    Filed: April 21, 2021
    Publication date: October 28, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Jonathan M. Rothberg, John H. Leamon, Jonathan C. Schultz, Michele Millham, Caixia Lv, Haidong Huang, Roger Nani, Omer Ad, Brian Reed, Matthew Dyer, Robert E. Boer
  • Publication number: 20210221839
    Abstract: The present disclosure relates to compounds and methods for selective C-terminal functionalization of peptides. In certain embodiments, the compounds have improved water-solubility, and are suitable for use in connection with peptide sequencing methodologies.
    Type: Application
    Filed: January 20, 2021
    Publication date: July 22, 2021
    Applicant: Quantum-Si Incorporated
    Inventors: Haidong Huang, Roger Nani, Omer Ad, Brian Reed, Matthew Dyer, Robert E. Boer