Patents by Inventor Paolo Botti

Paolo Botti has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20060233747
    Abstract: The present invention relates to methods and compositions for modifying peptides, polypeptides and proteins with polymers, especially glyco-mimetic polymers, so as to improve their biological activity or pharmacokinetic properties. The invention further provides methods and uses for such polymer-modified peptides, polypeptides and proteins. The invention is particularly suitable for use in the synthesis of polymer-modified, synthetic bioactive proteins, and of pharmaceutical compositions that contain such proteins.
    Type: Application
    Filed: June 5, 2006
    Publication date: October 19, 2006
    Applicant: Amylin Pharmaceuticals, Inc.
    Inventors: Gerd Kochendoerfer, Paolo Botti, James Bradburne, Shiah -yun Chen, Sonya Cressman, Christie Hunter, Stephen Kent, Donald Low, Jill Wilken
  • Patent number: 7118737
    Abstract: The present invention relates to methods and compositions for modifying peptides, polypeptides and proteins with polymers, especially glyco-mimetic polymers, so as to improve their biological activity or pharmacokinetic properties. The invention further provides methods and uses for such polymer-modified peptides, polypeptides and proteins. The invention is particularly suitable for use in the synthesis of polymer-modified synthetic bioactive proteins (FIG. 1D), and of pharmaceutical compositions that contain such proteins.
    Type: Grant
    Filed: July 12, 2001
    Date of Patent: October 10, 2006
    Assignee: Amylin Pharmaceuticals, Inc.
    Inventors: Gerd G. Kochendoerfer, Paolo Botti, James A. Bradburne, Shiah-yun Chen, Sonya Cressman, Christie L. Hunter, Stephen B. H. Kent, Donald W. Low, Jill G. Wilken
  • Publication number: 20060149039
    Abstract: The present invention concerns methods and compositions for extending the technique of native chemical ligation to permit the ligation of a wider range of peptides, polypeptides, other polymers and other molecules via an amide bond. The invention further provides methods and uses for such proteins and derivatized proteins. The invention is particularly suitable for use in the synthesis of optionally polymer-modified, synthetic bioactive proteins, and of pharmaceutical compositions that contain such proteins.
    Type: Application
    Filed: January 27, 2006
    Publication date: July 6, 2006
    Applicant: Amylin Pharmaceuticals, Inc.
    Inventors: Christie Hunter, Paolo Botti, James Bradburne, Shiah-yun Chen, Sonya Cressman, Stephen Kent, Gerd Kochendoerfer, Donald Low
  • Patent number: 7030218
    Abstract: The present invention concerns methods and compositions for extending the technique of native chemical ligation of a wider range of peptides, polypeptides, other polymers and other molecules via an amide bond (see FIG. 1). The invention further provides methods and uses for such proteins and derivatized proteins. The invention is particularly suitable for use in the synthesis of optionally polymer-modified, synthetic bioactive proteins, and of pharmaceutical compositions that contain such proteins.
    Type: Grant
    Filed: July 12, 2001
    Date of Patent: April 18, 2006
    Assignee: Gryphon Therapeutics
    Inventors: Christie L. Hunter, Paolo Botti, James A. Bradburne, Shiah-yun Chen, Sonya Cressman, Stephen B. H. Kent, Gerd G. Kochendoerfer, Donald W. Low
  • Patent number: 6977292
    Abstract: The invention is directed to nucleophile-stable thioester generating compounds comprising a carboxyester thiol. The compounds have wide applicability in organic synthesis, including the generation of peptide-, polypeptide- and other polymer-thioesters. The invention is particularly useful for generating activated-thioesters from precursors that are made under conditions in which strong nucleophiles are employed, such as peptides or polypeptides made using Fmoc SPPS, as well as multi-step ligation or conjugation schemes that require (or benefit from the use of) compatible selective approaches for directing a specific ligation or conjugation reaction of interest.
    Type: Grant
    Filed: August 30, 2001
    Date of Patent: December 20, 2005
    Assignee: Gryphon Therapeutics
    Inventors: Paolo Botti, James A. Bradburne, Stephen B. H. Kent
  • Publication number: 20050261473
    Abstract: The present invention provides methods of assembling oligopeptides or polypeptides in a native chemical ligation reaction that eliminates the formation of unwanted side products resulting from the presence of an unprotecte acidic C-terminal oligopeptide thioester. An important aspect of the present invention is providing side chain protected acidic C-terminal oligopeptide thioesters.
    Type: Application
    Filed: June 9, 2003
    Publication date: November 24, 2005
    Applicant: GeneProt, Inc.
    Inventors: Paolo Botti, Matteo Villain, Sonia Manganiello, Hubert Gaertner
  • Publication number: 20050113563
    Abstract: The invention provides a method of assembling oligopeptide intermediates in a native chemical ligation reaction that eliminates self-ligation of bi-functional intermediates. An important aspect of the invention is a bi-functional intermediate with an N-terminal heterocyclic protecting group which effectively prevents self-ligation in the chemical assembly process. The present invention is useful in methods for convergent synthesis of polypeptides and proteins and improve,s; the efficiency of native chemical ligation reactions, particularly where three or more peptide fragments are used to assemble a polypeptide or protein product.
    Type: Application
    Filed: November 14, 2002
    Publication date: May 26, 2005
    Inventors: Paolo Botti, Hubert Gaertner, Sonia Manganiello, Matteo Villain
  • Publication number: 20040138412
    Abstract: The invention is directed to methods and compositions for chemical ligation of components comprising a first component having a carboxythioester, and preferable an &agr;-carboxythioester, moiety and a second component having an N-substituted, and preferably an N&agr;-substituted, 2 or 3 carbon chain alkyl or aryl thiol to give a ligation product having an N-substituted amide bond at the ligation site. The reactants of the invention are chemoselective, and the alkyl or aryl thiol moiety is removable from the ligation product. Removal of the alkyl or aryl thiol gives a native amide bond at the ligation site. The methods and compositions of the invention are particularly useful for ligation of peptides and polypeptides. The ligation system of the invention is applicable to a wide variety of molecules, and thus can be exploited to generate peptides, polypeptides and other amino acid containing polymers having a native amide bond at the ligation site.
    Type: Application
    Filed: January 15, 2003
    Publication date: July 15, 2004
    Inventors: Paolo Botti, James A Bradburne, Stephen B H Kent, Donald W Low
  • Publication number: 20040115774
    Abstract: The present invention relates to methods and compositions for modifying peptides, polypeptides and proteins with polymers, especially glyco-mimetic polymers, so as to improve their biological activity or pharmacokinetic properties. The invention further provides methods and uses for such polymer-modified peptides, polypeptides and proteins. The invention is particularly suitable for use in the synthesis of polymer-modified synthetic bioactive proteins (FIG. 1D), and of pharmaceutical compositions that contain such proteins.
    Type: Application
    Filed: January 8, 2003
    Publication date: June 17, 2004
    Inventors: Gerd G Kochendoerfer, Paolo Botti, James A Bradburne, Shiah-yun Chen, Sonya Cressman, Christie L Hunter, Stephen B H Kent, Donald W Low, Jill G Wilken
  • Publication number: 20030208046
    Abstract: The present invention concerns methods and compositions for extending the technique of native chemical ligation of a wider range of peptides, polypeptides, other polymers and other molecules via an amide bond (see FIG. 1). The invention further provides methods and uses for such proteins and derivatized proteins. The invention is particularly suitable for use in the synthesis of optionally polymer-modified, synthetic bioactive proteins, and of pharmaceutical compositions that contain such proteins.
    Type: Application
    Filed: January 8, 2003
    Publication date: November 6, 2003
    Inventors: Christie L. Hunter, Paolo Botti, James A. Bradburne, Shiah-yun Chen, Sonya Cressman, Stephen B.H. Kent, Gerd G. Kochendoerfer, Donald W. Low
  • Publication number: 20030191291
    Abstract: Synthetic erythropoiesis stimulating proteins are provided. Also provided are methods for synthesizing the proteins. The invention further relates to derivatives of such synthetic erythropoiesis stimulating proteins that are polymer-modified in a defined manner. Methods and uses for such proteins and derivatized proteins are also provided.
    Type: Application
    Filed: January 13, 2003
    Publication date: October 9, 2003
    Inventors: Gerd G. Kochendoerfer, Paolo Botti, James A. Bradburne, Shiah-yun Chen, Sonya Cressman, Christine L. Hunter, Stephen B.H. Kent, Donald W. Low
  • Publication number: 20030149234
    Abstract: The invention is directed to nucleophile-stable thioester generating compounds comprising an orthothioloester or a carboxyester thiol, methods of production and use. The compounds and methods have wide applicability in organic synthesis, including the generation of peptide-, polypeptide- and other polymer-thioesters. The invention is particularly useful for generating activated-thioesters from precursors that are made under conditions in which strong nucleophiles are employed, such as peptides or polypeptides made using Fmoc SPPS, as well as multi-step ligation or conjugation schemes that require (or benefit from the use of) compatible selective approaches for directing a specific ligation or conjugation reaction of interest.
    Type: Application
    Filed: January 9, 2003
    Publication date: August 7, 2003
    Inventors: Paolo Botti, James A. Bradburne, Stephen B.H. Kent
  • Publication number: 20030018169
    Abstract: The present invention relates to methods and compositions for lipid matrix-assisted chemical ligation and synthesis of membrane polypeptides that are incorporated in a lipid matrix. The invention is exemplified in production of a prefolded membrane polypeptide embedded within a lipid matrix via stepwise chemoselective chemical ligation of unprotected peptide segments, where at least one peptide segment is embedded in a lipid matrix. Any chemoselective reaction chemistry amenable for ligation of unprotected peptide segments can be employed. Suitable lipid matrices include liposomes, micelles, cell membrane patches and optically isotropic cubic lipidic phase matrices. Prefolded synthetic and semi-synthetic membrane polypeptides synthesized according to the methods and compositions of the invention also permit site-specific incorporation of one or more detectable moieties, such as a chromophore, which can be conveniently introduced during synthesis.
    Type: Application
    Filed: July 30, 2002
    Publication date: January 23, 2003
    Inventors: Gerd G. Kochendoerfer, Christie L. Hunter, Stephen B.H. Kent, Paolo Botti
  • Patent number: 6451543
    Abstract: The present invention relates to methods and compositions for lipid matrix-assisted chemical ligation and synthesis of membrane polypeptides that are incorporated in a lipid matrix. The invention is exemplified in production of a prefolded membrane polypeptide embedded within a lipid matrix via stepwise chemoselective chemical ligation of unprotected peptide segments, where at least one peptide segment is embedded in a lipid matrix. Any chemoselective reaction chemistry amenable for ligation of unprotected peptide segments can be employed. Suitable lipid matrices include liposomes, micelles, cell membrane patches and optically isotropic cubic lipidic phase matrices. Prefolded synthetic and semi-synthetic membrane polypeptides synthesized according to the methods and compositions of the invention also permit site-specific incorporation of one or more detectable moieties, such as a chromophore, which can be conveniently introduced during synthesis.
    Type: Grant
    Filed: August 26, 1999
    Date of Patent: September 17, 2002
    Assignee: Gryphon Sciences
    Inventors: Gerd. G. Kochendoerfer, Christie L. Hunter, Stephen B. H. Kent, Paolo Botti