Patents by Inventor Pascal Mayer

Pascal Mayer has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20130164736
    Abstract: The present invention relates to a method for detecting molecular interactions in a solution. In particular, the present invention relates to a method for detecting interactions between two substances that are likely to interact with one another. The present invention can be used in particular in the field of scientific research and in the field of medical analysis.
    Type: Application
    Filed: June 30, 2011
    Publication date: June 27, 2013
    Applicant: BIOFILM CONTROL
    Inventors: Thierry Bernardi, Pascal Mayer, Jérôme Groelly
  • Patent number: 8143008
    Abstract: A nucleic acid molecule can be annealed to an appropriate immobilized primer. The primer can then be extended and the molecule and the primer can be separated from one another. The extended primer can then be annealed to another immobilized primer and the other primer can be extended. Both extended primers can then be separated from one another and can be used to provide further extended primers. The process can be repeated to provide amplified, immobilized nucleic acid molecules. These can be used for many different purposes, including sequencing, screening, diagnosis, in situ nucleic acid synthesis, monitoring gene expression, nucleic acid fingerprinting, etc.
    Type: Grant
    Filed: April 30, 2010
    Date of Patent: March 27, 2012
    Assignee: Illumina, Inc.
    Inventors: Eric H. Kawashima, Laurent Farinelli, Pascal Mayer
  • Patent number: 7985565
    Abstract: A nucleic acid molecule can be annealed to an appropriate immobilized primer. The primer can then be extended and the molecule and the primer can be separated from one another. The extended primer can then be annealed to another immobilized primer and the other primer can be extended. Both extended primers can then be separated from one another and can be used to provided further extended primers. The process can be repeated to provide amplified, immobilized nucleic acid molecules. These can be used for many different purposes, including sequencing, screening, diagnosis, in situ nucleic acid synthesis, monitoring gene expression, nucleic acid fingerprinting, etc.
    Type: Grant
    Filed: June 2, 2003
    Date of Patent: July 26, 2011
    Assignee: Illumina, Inc.
    Inventors: Pascal Mayer, Laurent Farinelli, Eric H. Kawashima
  • Patent number: 7972820
    Abstract: Methods for isothermal amplification of nucleic acids by the means of a solid support are disclosed. These methods are useful for applications needing high throughput, in particular nucleic acid sequencing.
    Type: Grant
    Filed: May 5, 2010
    Date of Patent: July 5, 2011
    Assignees: Illumina Cambridge Limited, Illumina, Inc.
    Inventor: Pascal Mayer
  • Publication number: 20110045541
    Abstract: A nucleic acid molecule can be annealed to an appropriate immobilised primer. The primer can then be extended and the molecule and the primer can be separated from one another. The extended primer can then be annealed to another immobilised primer and the other primer can be extended. Both extended primers can then be separated from one another and can be used to provide further extended primers. The process can be repeated to provide amplified, immobilised nucleic acid molecules. These can be used for many different purposes, including sequencing, screening, diagnosis, in situ nucleic acid synthesis, monitoring gene expression, nucleic acid fingerprinting, etc.
    Type: Application
    Filed: April 30, 2010
    Publication date: February 24, 2011
    Applicants: ILLUMINA CAMBRIDGE, LTD., ILLUMINA, INC.
    Inventors: Eric H. Kawashima, Laurent Farinelli, Pascal Mayer
  • Publication number: 20110008781
    Abstract: Methods for isothermal amplification of nucleic acid by means of a solid support are disclosed. These methods are useful for applications needing high throughput, in particular nucleic acid sequencing.
    Type: Application
    Filed: May 5, 2010
    Publication date: January 13, 2011
    Applicants: ILLUMINA CAMBRIDGE, LTD., ILLUMINA, INC.
    Inventor: Pascal Mayer
  • Patent number: 7790418
    Abstract: Methods for isothermal amplification of nucleic acid by the means of a solid support are disclosed. These methods are useful for applications needing high throughput, in particular nucleic acid sequencing.
    Type: Grant
    Filed: December 7, 2001
    Date of Patent: September 7, 2010
    Assignees: Illumina Cambridge Limited, Illumina, Inc.
    Inventor: Pascal Mayer
  • Publication number: 20080286795
    Abstract: A nucleic acid molecule can be annealed to an appropriate immobilized primer. The primer can then be extended and the molecule and the primer can be separated from one another. The extended primer can then be annealed to another immobilized primer and the other primer can be extended. Both extended primers can then be separated from one another and can be used to provided further extended primers. The process can be repeated to provide amplified, immobilized nucleic acid molecules. These can be used for many different purposes, including sequencing, screening, diagnosis, in situ nucleic acid synthesis, monitoring gene expression, nucleic acid fingerprinting, etc.
    Type: Application
    Filed: April 15, 2008
    Publication date: November 20, 2008
    Applicant: Solexa Limited
    Inventors: Eric H. Kawashima, Laurent Farinelli, Pascal Mayer
  • Publication number: 20080160580
    Abstract: Methods for amplification and sequencing of at least one nucleic acid comprising the following steps: (1) forming at least one nucleic acid template comprising the nucleic acid(s) to be amplified or sequenced, wherein said nucleic acid(s) contains at the 5? end an oligonucleotide sequence Y and at the 3? end an oligonucleotide sequence Z and, in addition, the nucleic acid(s) carry at the 5? end a means for attaching the nucleic acid(s) to a solid support; (2) mixing said nucleic acid template(s) with one or more colony primers X, which can hybridize to the oligonucleotide sequence Z and carries at the 5? end a means for attaching the colony primers to a solid support, in the presence of a solid support so that the 5? ends of both the nucleic acid template and the colony primers bind to the solid support; (3) performing one or more nucleic acid amplification reactions on the bound template(s), so that nucleic acid colonies are generated and optionally, performing at least one step of sequence determination of
    Type: Application
    Filed: August 17, 2006
    Publication date: July 3, 2008
    Inventors: Celine Adessi, Eric Kawashima, Pascal Mayer, Jean-Jacques Mermod, Gerardo Turcatti
  • Publication number: 20070015200
    Abstract: The invention provides methods for determining genome-wide sequence variations associated with a phenotype of a species in a hypothesis-free manner. In the methods of the invention, a set of restriction fragments for each of a sub-population of individuals having the phenotype are generated by digesting nucleic acids from the individual using one or more different restriction enzymes. A set of restriction sequence tags for the individual is then determined from the set of restriction fragments. The restriction sequence tags for the sub-population of organisms are compared and grouped into one or more groups, each of which comprising restriction sequence tags that comprise homologous sequences. The obtained one or more groups of restriction sequence tags identify the sequence variations associated with the phenotype. The methods of the invention can be used for, e.g., analysis of large numbers of sequence variants in many patient samples to identify subtle genetic risk factors.
    Type: Application
    Filed: September 14, 2006
    Publication date: January 18, 2007
    Inventors: Pascal Mayer, Ilia Leviev, Magne Osteras, Laurent Farinelli
  • Patent number: 7115400
    Abstract: Methods for amplification and sequencing of at least one nucleic acid comprising the following steps: (1) forming at least one nucleic acid template comprising the nucleic acid(s) to be amplified or sequenced, wherein said nucleic acid(s) to be amplified or sequenced, wherein said nucleic acid(s) contains at the 5? end an oligonucleotide sequence Y and at the 3? end an oligonucleotide sequence Z and, in addition, the nucleic acid(s) carry at the 5? end a means for attaching the nucleic acid(s) to a solid support; (2) mixing said nucleic acid template(s) with one or more colony primers X, which can hybridize to the oligonucleotide sequence Z and carries at the 5? end a means for attaching the colony primers to a solid support, in the presence of a solid support so that the 5? ends of both the nucleic acid template and the colony primers bind to the solid support; (3) performing one or more nucleic acid amplification reactions on the bound template(s), so that nucleic acid colonies are generated and optionally,
    Type: Grant
    Filed: September 30, 1999
    Date of Patent: October 3, 2006
    Assignee: Solexa Ltd.
    Inventors: Celine Adessi, Eric Kawashima, Pascal Mayer, Jean-Jacques Mermod, Gerardo Turcatti
  • Publication number: 20050100900
    Abstract: A nucleic acid molecule can be annealed to an appropriate immobilized primer. The primer can then be extended and the molecule and the primer can be separated from one another. The extended primer can then be annealed to another immobilized primer and the other primer can be extended. Both extended primers can then be separated from one another and can be used to provided further extended primers. The process can be repeated to provide amplified, immobilized nucleic acid molecules. These can be used for many different purposes, including sequencing, screening, diagnosis, in situ nucleic acid synthesis, monitoring gene expression, nucleic acid fingerprinting, etc.
    Type: Application
    Filed: June 2, 2003
    Publication date: May 12, 2005
    Applicant: MANTEIA SA
    Inventors: Eric Kawashima, Laurent Farinelli, Pascal Mayer
  • Patent number: 6827830
    Abstract: An electrophoretic method for purifying a nucleic acid sample is disclosed. According to the method, the electrophoresis is effective to substantially reduce the concentration of contaminants relative to the concentration of desired nucleic acid in the nucleic acid sample, thereby producing a purified nucleic acid. In the method, the loading and recovery wells may be the same or different, and the electric fields may be DC or alternating.
    Type: Grant
    Filed: September 20, 2000
    Date of Patent: December 7, 2004
    Assignees: Applera Corporation, University of Ottawa
    Inventors: Gary Slater, J. William Efcavitch, Guy Drouin, Pascal Mayer, Jean Rousseau, Hong Yan Zhou, Claudia Chiesa, Robert Ruhfel, Roger O'Neill
  • Publication number: 20040096853
    Abstract: Methods for isothermal amplification of nucleic acid by the means of a solid support are disclosed. These methods are useful for applications needing high throughput, in particular nucleic acids sequencing.
    Type: Application
    Filed: November 3, 2003
    Publication date: May 20, 2004
    Inventor: Pascal Mayer
  • Publication number: 20040002090
    Abstract: The invention provides methods for determining genome-wide sequence variations associated with a phenotype of a species in a hypothesis-free manner. In the methods of the invention, a set of restriction fragments for each of a sub-population of individuals having the phenotype are generated by digesting nucleic acids from the individual using one or more different restriction enzymes. A set of restriction sequence tags for the individual is then determined from the set of restriction fragments. The restriction sequence tags for the sub-population of organisms are compared and grouped into one or more groups, each of which comprising restriction sequence tags that comprise homologous sequences. The obtained one or more groups of restriction sequence tags identify the sequence variations associated with the phenotype. The methods of the invention can be used for, e.g., analysis of large numbers of sequence variants in many patient samples to identify subtle genetic risk factors.
    Type: Application
    Filed: March 4, 2003
    Publication date: January 1, 2004
    Inventors: Pascal Mayer, Ilia Leviev, Magne Osteras, Laurent Farinelli
  • Publication number: 20030206832
    Abstract: The microfluidic dispensing device includes a patterned seal having a specified arrangement of holes and groves, and an connection plate having passages corresponding to the holes in the patterned seal. The patterned seal and the connection plate are configured to stack onto a planar substrate, such as a glass slide, and are sealed together and against the substrate by a negative pressure, or vacuum, applied through the connection plate. When the patterned seal is secured against the substrate, the grooves in the patterned seal form a network of channels for delivering fluids to specified regions on the substrate. The connection plate preferably includes one or more connectors for attaching fluid and/or vacuum lines, and optionally includes one or more sensors to monitor operation of the device. The system of the present invention also includes a device for automatically assembling and handling the microfluidic dispensing device.
    Type: Application
    Filed: May 2, 2002
    Publication date: November 6, 2003
    Inventors: Pierre Thiebaud, Pascal Mayer, Eric Chevalier
  • Patent number: 6610186
    Abstract: The invention concerns a method for separating particles or molecules whereby these particles or molecules are introduced in a separating medium and a moving force is applied to them in said medium. The method is characterised in that the separating medium is a ferrofluid, i.e. a colloidal suspension of magnetic particles and a magnetic field is applied to this ferrofluid generating therein at least an alternation of a zone rich in magnetic particles and a zone poor in magnetic particles, part at least of the region of the ferrofluid in which this alternation is generated is passed through by the particles or molecules to be separated during their migration.
    Type: Grant
    Filed: August 30, 1999
    Date of Patent: August 26, 2003
    Assignee: Centre National de la Recherche Scientifique (CNRS)
    Inventors: Pascal Mayer, Jérôme Bibette, Jean-Louis Viovy
  • Publication number: 20020055100
    Abstract: Different nucleic acid molecules present at different locations can be sequenced in parallel Primers that are annealed to the nucleic acid molecules can be provided. Each location can then be provided with a nucleic acid polymerase and a nucleotide. It can then be determined whether or not the nucleotide has been used in primer extension and the process can be repeated. As an alternative to using primers, a nick in a double stranded nucleic acid molecule can provide a 3′-OH group for chain extension.
    Type: Application
    Filed: September 30, 1999
    Publication date: May 9, 2002
    Inventors: ERIC H. KAWASHIMA, LAURENT FARINELLI, PASCAL MAYER
  • Patent number: 6146511
    Abstract: An electrophoretic method for purifying a nucleic acid sample is disclosed. The method generally comprises the steps of (1) providing a nucleic acid sample comprising a desired nucleic acid and one or more contaminants, (2) providing an electrophoresis matrix having a loading well and a recovery well formed therein, (3) placing the nucleic acid sample into the loading well, (4) performing a first electrophoresis comprising electrophoresing the nucleic acid sample for a first time effective to transport the desired nucleic acid out of the loading well and into the electrophoresis matrix; and (5) performing a second electrophoresis comprising electrophoresing the nucleic acid sample for a second time effective to transport the desired nucleic acid out of the electrophoresis matrix and into the recovery well.
    Type: Grant
    Filed: January 30, 1998
    Date of Patent: November 14, 2000
    Assignees: The Perkin-Elmer Corporation, The University of Ottawa
    Inventors: Gary Slater, J. William Efcavitch, Guy Drouin, Pascal Mayer, Jean Rousseau, Hong Yan Zhou, Claudia Chiesa, Robert Ruhfel, Roger O'Neill