Patents by Inventor Patrick Sean Daugherty

Patrick Sean Daugherty has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 10017757
    Abstract: The present invention provides compositions including peptide display scaffolds that present at least one candidate peptide and at least one detectable moiety in at least one of the N-terminal and C-terminal candidate peptide presenting domains that when expressed in a cell are accessible at a surface of the cell outermembrane. In addition, the present invention also provides kits and methods for screening a library of cells presenting the candidate peptides in peptide display scaffolds to identify a ligand for an enzyme.
    Type: Grant
    Filed: July 21, 2015
    Date of Patent: July 10, 2018
    Assignee: The Regents of the University of California
    Inventors: Patrick Sean Daugherty, Kevin Todd Boulware
  • Publication number: 20180002687
    Abstract: Methods of making and using bacterial display polypeptide libraries using circularly permuted OmpX (CPX) variants are disclosed. The invention further relates to methods for enhancing the display of proteins and peptides at the surface of bacteria by optimizing linkers and incorporating mutations at positions 165 and 166 of CPX.
    Type: Application
    Filed: June 5, 2017
    Publication date: January 4, 2018
    Inventors: Patrick Sean Daugherty, Jeffrey Rice
  • Patent number: 9695415
    Abstract: Methods of making and using bacterial display polypeptide libraries using circularly permuted OmpX (CPX) variants are disclosed. The invention further relates to methods for enhancing the display of proteins and peptides at the surface of bacteria by optimizing linkers and incorporating mutations at positions 165 and 166 of CPX.
    Type: Grant
    Filed: May 20, 2015
    Date of Patent: July 4, 2017
    Assignee: The Regents of the University of California
    Inventors: Patrick Sean Daugherty, Jeffrey Rice
  • Publication number: 20160122425
    Abstract: Activatable binding polypeptides (ABPs), which contain a target binding moiety (TBM), a masking moiety (MM), and a cleavable moiety (CM) are provided. Activatable antibody compositions, which contain a TBM containing an antigen binding domain (ABD), a MM and a CM are provided. Furthermore, ABPs which contain a first TBM, a second TBM and a CM are provided. The ABPs exhibit an “activatable” conformation such that at least one of the TBMs is less accessible to target when uncleaved than after cleavage of the CM in the presence of a cleaving agent capable of cleaving the CM. Further provided are libraries of candidate ABPs, methods of screening to identify such ABPs, and methods of use. Further provided are ABPs having TBMs that bind VEGF, CTLA-4, or VCAM, ABPs having a first TBM that binds VEGF and a second TBM that binds FGF, as well as compositions and methods of use.
    Type: Application
    Filed: September 14, 2015
    Publication date: May 5, 2016
    Inventors: Patrick Sean Daugherty, Nancy Stagliano, Jerry Thomas, Kathryn Kamath, James W. West, Sanjay Khare, Jason Sagert
  • Publication number: 20160010084
    Abstract: The present invention provides compositions including peptide display scaffolds that present at least one candidate peptide and at least one detectable moiety in at least one of the N-terminal and C-terminal candidate peptide presenting domains that when expressed in a cell are accessible at a surface of the cell outermembrane. In addition, the present invention also provides kits and methods for screening a library of cells presenting the candidate peptides in peptide display scaffolds to identify a ligand for an enzyme.
    Type: Application
    Filed: July 21, 2015
    Publication date: January 14, 2016
    Inventors: Patrick Sean Daugherty, Kevin Todd Boulware
  • Publication number: 20160010082
    Abstract: Methods of making and using bacterial display polypeptide libraries using circularly permuted OmpX (CPX) variants are disclosed. The invention further relates to methods for enhancing the display of proteins and peptides at the surface of bacteria by optimizing linkers and incorporating mutations at positions 165 and 166 of CPX.
    Type: Application
    Filed: May 20, 2015
    Publication date: January 14, 2016
    Inventors: Patrick Sean Daugherty, Jeffrey Rice
  • Patent number: 9234847
    Abstract: The present invention provides compositions including peptide display scaffolds that present at least one candidate peptide and at least one detectable moiety in at least one of the N-terminal and C-terminal candidate peptide presenting domains that when expressed in a cell are accessible at a surface of the cell outermembrane. In addition, the present invention also provides kits and methods for screening a library of cells presenting the candidate peptides in peptide display scaffolds to identify a ligand for an enzyme.
    Type: Grant
    Filed: December 23, 2009
    Date of Patent: January 12, 2016
    Assignee: The Regents of the University of California
    Inventors: Patrick Sean Daugherty, Kevin Todd Boulware
  • Patent number: 9169321
    Abstract: Activatable binding polypeptides (ABPs), which contain a target binding moiety (TBM), a masking moiety (MM), and a cleavable moiety (CM) are provided. Activatable antibody compositions, which contain a TBM containing an antigen binding domain (ABD), a MM and a CM are provided. Furthermore, ABPs which contain a first TBM, a second TBM and a CM are provided. The ABPs exhibit an “activatable” conformation such that at least one of the TBMs is less accessible to target when uncleaved than after cleavage of the CM in the presence of a cleaving agent capable of cleaving the CM. Further provided are libraries of candidate ABPs, methods of screening to identify such ABPs, and methods of use. Further provided are ABPs having TBMs that bind VEGF, CTLA-4, or VCAM, ABPs having a first TBM that binds VEGF and a second TBM that binds FGF, as well as compositions and methods of use.
    Type: Grant
    Filed: July 24, 2013
    Date of Patent: October 27, 2015
    Assignees: The Regents of the University of California, CytomX Therapeutics, Inc.
    Inventors: Patrick Sean Daugherty, Nancy Stagliano, Jerry Thomas, Kathryn Kamath, James W. West, Sanjay Khare, Jason Sagert
  • Patent number: 9121828
    Abstract: The present invention provides compositions including peptide display scaffolds that present at least one candidate peptide and at least one detectable moiety in at least one of the N-terminal and C-terminal candidate peptide presenting domains that when expressed in a cell are accessible at a surface of the cell outermembrane. In addition, the present invention also provides kits and methods for screening a library of cells presenting the candidate peptides in peptide display scaffolds to identify a ligand for an enzyme.
    Type: Grant
    Filed: September 28, 2012
    Date of Patent: September 1, 2015
    Assignee: The Regents of the University of California
    Inventors: Patrick Sean Daugherty, Kevin Todd Boulware
  • Patent number: 8981046
    Abstract: The present invention provides synthetic cell platforms. The synthetic cell platforms can be used for culturing cells in vitro. The synthetic cell platforms can also be implanted together with bound cells into an individual. The present invention provides methods of using the platforms to provide cells or progeny of such cells for use in various applications, including clinical applications; and methods of use of the platforms to introduce cells into an individual.
    Type: Grant
    Filed: April 26, 2013
    Date of Patent: March 17, 2015
    Assignee: The Regents of the University of California
    Inventors: David V. Schaffer, Kevin Edward Healy, Lauren Little, Patrick Sean Daugherty
  • Publication number: 20140045195
    Abstract: Activatable binding polypeptides (ABPs), which contain a target binding moiety (TBM), a masking moiety (MM), and a cleavable moiety (CM) are provided. Activatable antibody compositions, which contain a TBM containing an antigen binding domain (ABD), a MM and a CM are provided. Furthermore, ABPs which contain a first TBM, a second TBM and a CM are provided. The ABPs exhibit an “activatable” conformation such that at least one of the TBMs is less accessible to target when uncleaved than after cleavage of the CM in the presence of a cleaving agent capable of cleaving the CM. Further provided are libraries of candidate ABPs, methods of screening to identify such ABPs, and methods of use. Further provided are ABPs having TBMs that bind VEGF, CTLA-4, or VCAM, ABPs having a first TBM that binds VEGF and a second TBM that binds FGF, as well as compositions and methods of use.
    Type: Application
    Filed: July 24, 2013
    Publication date: February 13, 2014
    Applicants: CytomX Therapeutics, Inc., The Regents of the University of California
    Inventors: Patrick Sean Daugherty, Nancy Stagliano, Jerry Thomas, Kathryn Kamath, James W. West, Sanjay Khare, Jason Sagert
  • Publication number: 20140037696
    Abstract: The present invention provides synthetic cell platforms. The synthetic cell platforms can be used for culturing cells in vitro. The synthetic cell platforms can also be implanted together with bound cells into an individual. The present invention provides methods of using the platforms to provide cells or progeny of such cells for use in various applications, including clinical applications; and methods of use of the platforms to introduce cells into an individual.
    Type: Application
    Filed: April 26, 2013
    Publication date: February 6, 2014
    Applicant: The Regents of the University of California
    Inventors: David V. Schaffer, Kevin Edward Healy, Lauren Little, Patrick Sean Daugherty
  • Patent number: 8541203
    Abstract: Activatable binding polypeptides (ABPs), which contain a target binding moiety (TBM), a masking moiety (MM), and a cleavable moiety (CM) are provided. Activatable antibody compositions, which contain a TBM containing an antigen binding domain (ABD), a MM and a CM are provided. Furthermore, ABPs which contain a first TBM, a second TBM and a CM are provided. The ABPs exhibit an “activatable” conformation such that at least one of the TBMs is less accessible to target when uncleaved than after cleavage of the CM in the presence of a cleaving agent capable of cleaving the CM. Further provided are libraries of candidate ABPs, methods of screening to identify such ABPs, and methods of use. Further provided are ABPs having TBMs that bind VEGF, CTLA-4, or VCAM, ABPs having a first TBM that binds VEGF and a second TBM that binds FGF, as well as compositions and methods of use.
    Type: Grant
    Filed: March 2, 2012
    Date of Patent: September 24, 2013
    Assignees: The Regents of the University of California, CytomX Therapeutics, Inc.
    Inventors: Patrick Sean Daugherty, Nancy Stagliano, Jerry Thomas, James W. West, Jason Sagert
  • Patent number: 8529898
    Abstract: Activatable binding polypeptides (ABPs), which contain a target binding moiety (TBM), a masking moiety (MM), and a cleavable moiety (CM) are provided. Activatable antibody compositions, which contain a TBM containing an antigen binding domain (ABD), a MM and a CM are provided. Furthermore, ABPs which contain a first TBM, a second TBM and a CM are provided. The ABPs exhibit an “activatable” conformation such that at least one of the TBMs is less accessible to target when uncleaved than after cleavage of the CM in the presence of a cleaving agent capable of cleaving the CM. Further provided are libraries of candidate ABPs, methods of screening to identify such ABPs, and methods of use. Further provided are ABPs having TBMs that bind VEGF, CTLA-4, or VCAM, ABPs having a first TBM that binds VEGF and a second TBM that binds FGF, as well as compositions and methods of use.
    Type: Grant
    Filed: March 6, 2012
    Date of Patent: September 10, 2013
    Assignees: The Regents of the University of California, CytomX Therapeutics, Inc.
    Inventors: Patrick Sean Daugherty, Nancy Stagliano, Jerry Thomas, Kathryn Kamath, James W. West, Sanjay Khare, Jason Sagert
  • Patent number: 8501905
    Abstract: The present invention provides synthetic cell platforms. The synthetic cell platforms can be used for culturing cells in vitro. The synthetic cell platforms can also be implanted together with bound cells into an individual. The present invention provides methods of using the platforms to provide cells or progeny of such cells for use in various applications, including clinical applications; and methods of use of the platforms to introduce cells into an individual.
    Type: Grant
    Filed: March 21, 2008
    Date of Patent: August 6, 2013
    Assignee: The Regents of the University of California
    Inventors: David V. Schaffer, Kevin Edward Healy, Lauren Little, Patrick Sean Daugherty
  • Publication number: 20120122731
    Abstract: Screening in a microfluidic device is mediated by a magnetic field that in some manner displaces or otherwise activates the entities of interest. Entities of interest can be identified and/or separated from one or more other components provided to the microfluidic device. Microfluidic devices may have mechanisms that apply a defined magnetic field to a region of the microfluidic device where library members pass through sequentially and/or in parallel.
    Type: Application
    Filed: January 17, 2007
    Publication date: May 17, 2012
    Inventors: Hyongsok Soh, Patrick Sean Daugherty, Sang-Hyun Oh
  • Publication number: 20120115755
    Abstract: A microfluidic device may employ one or more sorting stations for separating target species from other species in a sample. The separation is driven by magnetophoresis. A sorting station generally includes separate buffer and sample streams. A magnetic field gradient applied to the sorting station deflects the flow path of magnetic particles (which selectively label the target species) from a sample stream into a buffer stream. The buffer stream leaving the sorting station is used to detect or further process purified target species labeled with the magnetic particles.
    Type: Application
    Filed: October 28, 2011
    Publication date: May 10, 2012
    Inventors: Sang-Hyun Oh, Amarendra Kumar Singh, Yanting Zhang, Dharmakeerthi Nawarathna, Unyoung Kim, Patrick Sean Daugherty, Hyongsok Soh, Brian Scott Ferguson
  • Publication number: 20120108470
    Abstract: A microfluidic device may employ one or more sorting stations for separating target species from other species in a sample. The separation is driven by magnetophoresis. A sorting station generally includes separate buffer and sample streams. A magnetic field gradient applied to the sorting station deflects the flow path of magnetic particles (which selectively label the target species) from a sample stream into a buffer stream. The buffer stream leaving the sorting station is used to detect or further process purified target species labeled with the magnetic particles.
    Type: Application
    Filed: October 28, 2011
    Publication date: May 3, 2012
    Inventors: Sang-Hyun Oh, Amarendra Kumar Singh, Yanting Zhang, Dharmakeerthi Nawarathna, Unyoung Kim, Patrick Sean Daugherty, Hyongsok Soh, Brian Scott Ferguson
  • Patent number: 8071054
    Abstract: A microfluidic device may employ one or more sorting stations for separating target species from other species in a sample. The separation is driven by magnetophoresis. A sorting station generally includes separate buffer and sample streams. A magnetic field gradient applied to the sorting station deflects the flow path of magnetic particles (which selectively label the target species) from a sample stream into a buffer stream. The buffer stream leaving the sorting station is used to detect or further process purified target species labeled with the magnetic particles.
    Type: Grant
    Filed: August 30, 2010
    Date of Patent: December 6, 2011
    Assignee: The Regents of the University of California
    Inventors: Sang-Hyun Oh, Amarendra Kumar Singh, Yanting Zhang, Dharmakirthi Nawarathna, Unyoung Kim, Patrick Sean Daugherty, Hyongsok Soh, Brian Scott Ferguson
  • Publication number: 20110014600
    Abstract: A microfluidic device may employ one or more sorting stations for separating target species from other species in a sample. The separation is driven by magnetophoresis. A sorting station generally includes separate buffer and sample streams. A magnetic field gradient applied to the sorting station deflects the flow path of magnetic particles (which selectively label the target species) from a sample stream into a buffer stream. The buffer stream leaving the sorting station is used to detect or further process purified target species labeled with the magnetic particles.
    Type: Application
    Filed: August 30, 2010
    Publication date: January 20, 2011
    Inventors: Sang-Hyun Oh, Amarendra Kumar Singh, Yanting Zhang, Dharmakirthi Nawarathna, Unyoung Kim, Patrick Sean Daugherty, Hyongsok Soh, Brian Scott Ferguson