Patents by Inventor Paul Harkin

Paul Harkin has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20190127805
    Abstract: A molecular subgroup of cancer is characterised by misregulation of the MAPK signalling pathway and the epithelial-mesenchymal transition (EMT) pathway. Biomarker signatures can be used to identify cancers within the molecular subgroup. The signatures are also useful for identifying the treatment that is best suited for a given patient. A method for selecting a treatment for a subject having a cancer, comprises measuring the expression level(s) of at least biomarker selected from Table A or Table B in a sample from the subject. By assessing the expression level(s) of the at least 1 biomarker it can be determined whether the sample from the subject is positive or negative for a biomarker signature comprising the at least 1 biomarker. Based on the outcome of this assessment different treatments selected from MAPK pathway 10 inhibitors, EMT pathway inhibitors, SRC pathway inhibitors, taxanes and anti-angiogenic therapeutic agents may be indicated. Related treatment methods and products are also provided.
    Type: Application
    Filed: March 13, 2017
    Publication date: May 2, 2019
    Applicant: ALMAC DIAGNOSTICS LIMITED
    Inventors: Aya EL-HELALI, Niamh MCGIVERN, Andrena MCCAVIGAN, Bethanie PRICE, Laura KNIGHT, Nuala MCCABE, Richard KENNEDY, Paul HARKIN, Charlie GOURLEY
  • Patent number: 10196697
    Abstract: A method is provided for characterizing and/or prognosing prostate cancer in a subject comprising determining the expression level of at least one of CREM, ERRFI1, SRSF5, PDK4, HJURP, PDRG1, TRPM3, PDE4D, FI2, ADAMTS1, ADAMTS9, B3GNT5, CD38, CEBPD, CENPF, DKK1, EMP1, F3, IL1R1, IL8, JUNB, KLFIO, KLF4, LDLR, LGALS3, LPARI, MALAT1, MTUS1, MYBPC1, NFIL3, NR4A3, OAT, PI15, PTGS2, RHOBTB3, RIN2, RNFT2, SELE, SLC15A2, SOCS2, SOCS3, SSTR1, ST6GAL1, TSC22D1, XBP1 and ZFP36 in a sample from the subject. The method may be used to predict the likelihood of metastasis. Also disclosed are methods for diagnosing and selecting treatment for prostate cancer, together with corresponding methods of treatment. Systems, kits and computer programs for performing the methods are also provided.
    Type: Grant
    Filed: December 12, 2014
    Date of Patent: February 5, 2019
    Assignee: ALMAC DIAGNOSTICS LIMITED
    Inventors: Steven Walker, Andrena McCavigan, Timothy Davison, Richard Kennedy, Paul Harkin, Laura Hill
  • Publication number: 20180112390
    Abstract: An adjustable structure (1) comprising a first structural layer (10) defined by a first array of extendable and/or retractable rods or beams (11, 11a, 11b) pivotally connected to each other at their ends and a second structural layer (20) connected to the first structural layer (10) and defined by a second array of extendable and/or retractable rods or beams (21, 21a, 21b) pivotally connected to each other at their ends, wherein at least a portion of the second layer (20) is outside the volume defined by the first structural layer (10) and the extendable and/or retractable rods or beams in the second array are more densely packed than the extendable and/or retractable rods or beams in the first array.
    Type: Application
    Filed: October 16, 2017
    Publication date: April 26, 2018
    Inventor: Paul Harkin
  • Publication number: 20160312294
    Abstract: A method is provided for characterising and/or prognosing prostate cancer in a subject comprising determining the expression level of at least one of CREM, ERRFI1, SRSF5, PDK4, HJURP, PDRG1, TRPM3, PDE4D, FI2, ADAMTS1, ADAMTS9, B3GNT5, CD38, CEBPD, CENPF, DKK1, EMP1, F3, IL1R1, IL8, JUNB, KLFIO, KLF4, LDLR, LGALS3, LPARI, MALAT1, MTUS1, MYBPC1, NFIL3, NR4A3, OAT, PI15, PTGS2, RHOBTB3, RIN2, RNFT2, SELE, SLC15A2, SOCS2, SOCS3, SSTR1, ST6GAL1, TSC22D1, XBP1 and ZFP36 in a sample from the subject. The method may be used to predict the likelihood of metastasis. Also disclosed are methods for diagnosing and selecting treatment for prostate cancer, together with corresponding methods of treatment. Systems, kits and computer programs for performing the methods are also provided.
    Type: Application
    Filed: December 12, 2014
    Publication date: October 27, 2016
    Inventors: Steven WALKER, Andrena MCCAVIGAN, Timothy DAVISON, Richard KENNEDY, Paul HARKIN, Laura HILL
  • Publication number: 20160222459
    Abstract: Methods and compositions are provided for the identification of a molecular diagnostic test for lung cancer. The test defines a novel DNA damage repair deficient molecular subtype and enables classification of a patient within this subtype. The present invention can be used to determine whether patients with NSCLC are clinically responsive or non-responsive to a therapeutic regimen prior to administration of any chemotherapy. This test may be used with different drugs that directly or indirectly affect DNA damage or repair, such as many of the standard cytotoxic chemotherapeutic drugs currently in use. In particular, the present invention is directed to the use of certain combinations of predictive markers, wherein the expression of the predictive markers correlates with responsiveness or non-responsiveness to a therapeutic regimen.
    Type: Application
    Filed: September 9, 2014
    Publication date: August 4, 2016
    Inventors: Karen KEATING, Laura HILL, Steve DEHARO, Eamonn O'BRIEN, Tim DAVISON, Paul HARKIN, Richard KENNEDY, Jude O'DONNELL
  • Publication number: 20160222460
    Abstract: Methods and compositions are provided for the identification of a molecular diagnostic test for oesophageal adenocarcinoma (OAC). The test defines a novel DNA damage repair deficient molecular subtype and enables classification of a patient within this subtype. The present invention can be used to determine whether patients with OAC are clinically responsive or non-responsive to a therapeutic regimen prior to administration of any chemotherapy. This test may be used with different drugs that directly or indirectly affect DNA damage or repair, such as many of the standard cytotoxic chemotherapeutic drugs currently in use. In particular, the present invention is directed to the use of certain combinations of predictive markers, wherein the expression of the predictive markers correlates with responsiveness or non-responsiveness to a therapeutic regimen.
    Type: Application
    Filed: September 9, 2014
    Publication date: August 4, 2016
    Inventors: Karen KEATING, Laura HILL, Steve DEHARO, Eamonn O'BRIEN, Tim DAVISON, Paul HARKIN, Richard KENNEDY, Jude O'DONNELL
  • Publication number: 20150167288
    Abstract: An adjustable structure (1) comprising a first structural layer (10) defined by a first array of extendable and/or retractable rods or beams (11, 11a, 11b) pivotally connected to each other at their ends and a second structural layer (20) connected to the first structural layer (10) and defined by a second array of extendable and/or retractable rods or beams (21, 21a, 21 b) pivotally connected to each other at their ends, wherein at least a portion of the second layer (20) is outside the volume defined by the first structural layer (10) and the extendable and/or retractable rods or beams in the second arrayare more densely packed than the extendable and/or retractable rods or beams in the first array.
    Type: Application
    Filed: July 5, 2013
    Publication date: June 18, 2015
    Inventor: Paul HARKIN
  • Patent number: 8261509
    Abstract: A longitudinal length adjustable header made up of a center section and two end sections moveably attached to the center section. The center section has an ā€œLā€ shaped cross section and at least two longitudinal slots that are adapted to receive bolt means there through. The end sections have a plurality of apertures that align with the slots in the center section and are adapted to receive bolt means there through. The end sections are longitudinally slidable with respect to the center section whereby enabling adjusting the length of the header.
    Type: Grant
    Filed: March 2, 2010
    Date of Patent: September 11, 2012
    Inventor: Paul Harkin
  • Publication number: 20100229492
    Abstract: A longitudinal length adjustable header made up of a center section and two end sections moveably attached to the center section. The center section has an ā€œLā€ shaped cross section and at least two longitudinal slots that are adapted to receive bolt means there through. The end sections have a plurality of apertures that align with the slots in the center section and are adapted to receive bolt means there through. The end sections are longitudinally slidable with respect to the center section whereby enabling adjusting the length of the header.
    Type: Application
    Filed: March 2, 2010
    Publication date: September 16, 2010
    Inventor: Paul Harkin
  • Publication number: 20090221437
    Abstract: Arrays containing a transcriptome of a diseased tissue and methods of using the arrays for diagnosis, prognosis, screening, and identification of disease are provided herein. The transcriptome arrays from diseased tissue are useful for diagnosis of a disease by analysis of the genetic profile of a tissue sample specific to a disease state. The genetic profiles are then correlated with data on the effectiveness of specific therapeutic agents. Correlating expression profiles to the effectiveness of therapeutic agents provides a way to screen and select further patients predicted to respond to those therapeutic agents, thereby minimizing needless exposure to ineffective therapy.
    Type: Application
    Filed: March 31, 2009
    Publication date: September 3, 2009
    Applicant: Almac Diagnostics Limited
    Inventors: Paul Harkin, Patrick Johnson, Karl Mulligan, Austin Tanney
  • Publication number: 20090082218
    Abstract: Methods are described to derive design sequences for the production of nucleic acid microarrays. The present methods use high throughput 3? sequencing of transcripts in a tissue sample or diseased state to design probes for nucleic acid microarrays. Also described are nucleic acid microarrays that possess probes directed to the extreme 3? end of transcripts in a tissue. These microarrays preferably represent alternate polyadenylation sequences that are specific to the tissue from which the transcripts are derived. Also described are methods of using the microarrays directed to the extreme 3? end of the transcript for evaluating gene expression in a tissue where there are reduced false positive and false negative results.
    Type: Application
    Filed: August 12, 2008
    Publication date: March 26, 2009
    Inventors: Paul Harkin, Karl Mulligan, Austin Tanney, Gavin Oliver, Ciaran Fulton
  • Publication number: 20080268435
    Abstract: A method of predicting the presence of a non-functional BRCA1 gene in a biological sample, comprises the step of assaying the sample for expression of at least one specific member of the S100 family of genes. The invention also describes a kit for predicting the presence of non-functional BRCA1, comprising means for assaying a sample for expression of at least one specific member of the S100 gene family. A method of detecting a genetic predisposition to cancer is also described, comprising the step of assaying a biological sample for expression of a specific member of the S100 family of genes. Also described is a method of determining a suitable chemotherapeutic agent for an individual.
    Type: Application
    Filed: June 6, 2005
    Publication date: October 30, 2008
    Applicant: THE QUEEN'S UNIVERSITY OF BELFAST
    Inventor: Paul Harkin
  • Publication number: 20060134663
    Abstract: Arrays containing a transcriptome of a diseased tissue and methods of using the arrays for diagnosis, prognosis, screening, and identification of disease are provided herein. The transcriptome arrays from diseased tissue are useful for diagnosis of a disease by analysis of the genetic profile of a tissue sample specific to a disease state. The genetic profiles are then correlated with data on the effectiveness of specific therapeutic agents. Correlating expression profiles to the effectiveness of therapeutic agents provides a way to screen and select further patients predicted to respond to those therapeutic agents, thereby minimizing needless exposure to ineffective therapy.
    Type: Application
    Filed: November 3, 2005
    Publication date: June 22, 2006
    Inventors: Paul Harkin, Patrick Johnston, Karl Mulligan