Patents by Inventor Peter Haeberli

Peter Haeberli has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 6972330
    Abstract: Process for chemical synthesis of methoxy nucleosides.
    Type: Grant
    Filed: May 8, 2003
    Date of Patent: December 6, 2005
    Assignee: Sirna Therapeutics, Inc.
    Inventors: Leonid Beigelman, Peter Haeberli, Alexander Karpeisky, David Sweedler
  • Publication number: 20050239731
    Abstract: This invention relates to compounds, compositions, and methods useful for modulating mitogen activated protein kinase (MAP kinase) gene expression using short interfering nucleic acid (siNA) molecules. This invention also relates to compounds, compositions, and methods useful for modulating the expression and activity of other genes involved in pathways of MAP kinase gene expression and/or activity by RNA interference (RNAi) using small nucleic acid molecules. In particular, the instant invention features small nucleic acid molecules, such as short interfering nucleic acid (siNA), short interfering RNA (siRNA), double-stranded RNA (dsRNA), micro-RNA (miRNA), and short hairpin RNA (shRNA) molecules and methods used to modulate the expression of MAP kinase genes, such as Jun amino-terminal kinase (e.g., JNK-1, JNK-2), p38 (MAPK 14), ERK (e.g., ERK-1, ERK-2) and/or c-Jun.
    Type: Application
    Filed: August 20, 2004
    Publication date: October 27, 2005
    Applicant: Sirna Therapeutics, Inc.
    Inventors: James McSwiggen, Bharat Chowrira, Peter Haeberli, Leonid Beigelman, Nassim Usman
  • Publication number: 20050234232
    Abstract: This invention features permeability enhancer molecules, and methods, to increase membrane permeability of various molecules, such as nucleic acids, polynucleotides, oligonucleotides, enzymatic nucleic acid molecules, antisense nucleic acid molecules, 2-5A antisense chimeras, triplex forming oligonucleotides, decoy RNAS, dsRNAs, siRNAs, aptamers, or antisense nucleic acids containing nucleic acid cleaving chemical groups, peptides, polypeptides, proteins, carbohydrates, steroids, metals and small molecules, thereby facilitating cellular uptake of such molecules.
    Type: Application
    Filed: April 14, 2005
    Publication date: October 20, 2005
    Inventors: Leonid Beigelman, Jasenka Matulic-Adamic, Alexander Karpeisky, Peter Haeberli, David Sweedler, Mark Reynolds, Nilabh Chaudhary, John Min
  • Publication number: 20050222064
    Abstract: The present invention relates to delivery of biologically active molecules to cells. Specifically, the invention relates to polycationic compositions, polymers and methods for delivering nucleic acids, polynucleotides, and oligonucleotides such RNA, DNA and analogs thereof, including short interfering RNA (siRNA), ribozymes, and antisense, or peptides, polypeptides, proteins, antibodies, hormones and small molecules, to cells by facilitating transport across cellular membranes epithelial tissues and endothelial tissues. The compositions and methods of the invention are useful in therapeutic, research, and diagnostic applications that rely upon the efficient transfer of biologically active molecules into cells, tissues, and organs.
    Type: Application
    Filed: July 9, 2004
    Publication date: October 6, 2005
    Applicant: Sirna Therapeutics, Inc.
    Inventors: Chandra Vargeese, Weimin Wang, Tongqian Chen, David Sweedler, Peter Haeberli
  • Publication number: 20050209182
    Abstract: The present invention relates to nucleic acid aptamers that bind to bacterial proteases such as CylA and methods for their use alone or in combination with other therapies, such as antibiotics. Also disclosed are nucleic acids such as siRNA, antisense, and enzymatic nucleic acid molecules that can modulate the expression of CylA genes. The compounds and methods of the invention are expected to inhibit enterococcus infection and cytolysin activity.
    Type: Application
    Filed: December 14, 2004
    Publication date: September 22, 2005
    Applicant: Sirna Therapeutics, Inc.
    Inventors: David Morrissey, Peter Haeberli
  • Publication number: 20050182008
    Abstract: This invention relates to compounds, compositions, and methods useful for modulating NOGO and/or NOGO receptor gene expression using short interfering nucleic acid (siNA) molecules. This invention also relates to compounds, compositions, and methods useful for modulating the expression and activity of other genes involved in pathways of NOGO and/or NOGO receptor gene expression and/or activity by RNA interference (RNAi) using small nucleic acid molecules.
    Type: Application
    Filed: August 20, 2004
    Publication date: August 18, 2005
    Applicant: Sirna Therapeutics, Inc.
    Inventors: James McSwiggen, Bharat Chowrira, Peter Haeberli
  • Publication number: 20050176018
    Abstract: This invention relates to novel chemically-modified nucleic acid molecules having specified formulae that exhibit increased resistance to nucleases and increased binding affinity to target nucleic acid molecules. The invention further relates to methods of modulating gene expression using the novel chemically modified nucleic acid molecules, and compositions and cells comprising said molecules.
    Type: Application
    Filed: November 17, 2003
    Publication date: August 11, 2005
    Applicant: Sirna Therapeutics, Inc.
    Inventors: James Thompson, Leonid Beigelman, James McSwiggen, Alexander Karpeisky, Laurent Bellon, Mark Reynolds, Michael Zwick, Thale Jarvis, Tod Woolf, Peter Haeberli, Jasenka Matulic-Adamic
  • Publication number: 20050159382
    Abstract: This invention relates to compounds, compositions, and methods useful for modulating polycomb group protein EZH2 gene expression using short interfering nucleic acid (siNA) molecules. This invention also relates to compounds, compositions, and methods useful for modulating the expression and activity of other genes involved in pathways of polycomb group protein EZH2 gene expression and/or activity by RNA interference (RNAi) using small nucleic acid molecules. In particular, the instant invention features small nucleic acid molecules, such as short interfering nucleic acid (siNA), short interfering RNA (siRNA), double-stranded RNA (dsRNA), micro-RNA (mRNA), and short hairpin RNA (shRNA) molecules and methods used to modulate the expression of polycomb group protein EZH2 genes, such as EZH2.
    Type: Application
    Filed: August 19, 2004
    Publication date: July 21, 2005
    Applicant: Sirna Therapeutics, Inc.
    Inventors: James McSwiggen, Leonid Beigelman, Peter Haeberli, Nassim Usman
  • Publication number: 20050136436
    Abstract: This invention relates to compounds, compositions, and methods useful for modulating G72 and/or D-amino acid oxidase (DAAO) gene expression using short interfering nucleic acid (siNA) molecules. This invention also relates to compounds, compositions, and methods useful for modulating the expression and activity of other genes involved in pathways of G72 and/or D-amino acid oxidase (DAAO) gene expression and/or activity by RNA interference (RNAi) using small nucleic acid molecules. In particular, the instant invention features small nucleic acid molecules, such as short interfering nucleic acid (siNA), short interfering RNA (siRNA), double-stranded RNA (dsRNA), micro-RNA (miRNA), and short hairpin RNA (shRNA) molecules and methods used to modulate the expression of G72 and/or DAAO genes. The small nucleic acid molecules are useful in the treatment of schizophrenia and any other condition that responds to modulation of G72 and/or DAAO expression or activity.
    Type: Application
    Filed: August 19, 2004
    Publication date: June 23, 2005
    Applicant: Sirna Therapeutics, Inc.
    Inventors: James McSwiggen, Leonid Beigelman, Peter Haeberli
  • Publication number: 20050137155
    Abstract: The present invention concerns methods and reagents useful in modulating Parkinson genes, for example, PARK1 (SNCA), PARK2, PARK7, and/or PARK5 gene expression in a variety of applications, including use in therapeutic, diagnostic, target validation, and genomic discovery applications. Specifically, the invention relates to small nucleic acid molecules, such as short interfering nucleic acid (siNA), short interfering RNA (siRNA), double-stranded RNA (dsRNA), micro-RNA (miRNA), and short hairpin RNA (shRNA) molecules capable of mediating RNA interference (RNAi) against SNCA gene expression and/or activity. The small nucleic acid molecules are useful in the diagnosis and treatment of Parkinson Disease (PD), and any other disease or condition that responds to modulation of PARK1 (SNCA), PARK2, PARK7, and/or PARK5 expression or activity.
    Type: Application
    Filed: June 3, 2004
    Publication date: June 23, 2005
    Applicant: Sirna Therapeutics, Inc.
    Inventors: James McSwiggen, Peter Haeberli, Leonid Beigelman
  • Publication number: 20050119212
    Abstract: This invention relates to compounds, compositions, and methods useful for modulating Fas and/or FasL gene expression using short interfering nucleic acid (siNA) molecules. This invention also relates to compounds, compositions, and methods useful for modulating the expression and activity of other genes involved in pathways of Fas and/or FasL gene expression and/or activity by RNA interference (RNAi) using small nucleic acid molecules. In particular, the instant invention features small nucleic acid molecules, such as short interfering nucleic acid (siNA), short interfering RNA (siRNA), double-stranded RNA (dsRNA), micro-RNA (miRNA), and short hairpin RNA (shRNA) molecules and methods used to modulate the expression of Fas and/or FasL genes.
    Type: Application
    Filed: June 18, 2004
    Publication date: June 2, 2005
    Applicant: Sirna Therapeutics, Inc.
    Inventors: Peter Haeberli, James McSwiggen
  • Publication number: 20050059817
    Abstract: The present invention provides methods for the chemical synthesis of nucleosides and derivatives thereof, including 2?-amino, 2?-N-phthaloyl, 2?-O-methyl, 2?-0-silyl, 2?-O-triisopropylsilyloxymethyl, 2?-OH nucleosides, C-nucleosides, nucleoside phosphoramidites, C-nucleoside phosphoramidites, and non-nucleoside derivatives.
    Type: Application
    Filed: September 23, 2004
    Publication date: March 17, 2005
    Applicant: Sirna Therapeutics, Inc.
    Inventors: Leonid Beigelman, Alexander Karpeisky, Vladmir Serebryany, Peter Haeberli, David Sweedler
  • Publication number: 20050020525
    Abstract: The present invention concerns methods and reagents useful in modulating gene expression in a variety of applications, including use in therapeutic, diagnostic, target validation, and genomic discovery applications. Specifically, the invention relates to synthetic chemically modified small nucleic acid molecules, such as short interfering nucleic acid (siNA), short interfering RNA (siRNA), double-stranded RNA (dsRNA), micro-RNA (miRNA), and short hairpin RNA (shRNA) molecules capable of mediating RNA interference (RNAi) against target nucleic acid sequences. The small nucleic acid molecules are useful in the treatment of any disease or condition that responds to modulation of gene expression or activity in a cell, tissue, or organism.
    Type: Application
    Filed: January 14, 2004
    Publication date: January 27, 2005
    Inventors: James McSwiggen, Bharat Chowrira, Leonid Beigelman, Dennis Macejak, Shawn Zinnen, Pamela Pavco, Peter Haeberli, David Morissey, Kathy Fosnaugh, Sharon Jamison, Nassim Usman, James Thompson, Chandra Vargeese, Weimen Wang, Tonqian Chen, Narendra Vaish
  • Publication number: 20040249178
    Abstract: This invention features conjugates, degradable linkers, compositions, methods of synthesis, and applications thereof, including cholesterol, folate, galactose, galactosamine, N-acetyl galactosamine, PEG, phospholipid, peptide and human serum albumin (HSA) derived conjugates of biologically active compounds, including antibodies, antivirals, chemotherapeutics, peptides, proteins, hormones, nucleosides, nucleotides, non-nucleosides, and nucleic acids including enzymatic nucleic acids, DNAzymes, allozymes, antisense, dsRNA, siNA, siRNA, triplex oligonucleotides, 2,5-A chimeras, decoys and aptamers.
    Type: Application
    Filed: February 13, 2004
    Publication date: December 9, 2004
    Applicant: Sirna Therapeutics, Inc.
    Inventors: Chandra Vargeese, Peter Haeberli, Weimin Wang, Tongqian Chen
  • Publication number: 20040219671
    Abstract: The present invention concerns methods and reagents useful in modulating Parkinson genes, for example, PARK1 (SNCA), PARK2, PARK7, and/or PARK5 gene expression in a variety of applications, including use in therapeutic, diagnostic, target validation, and genomic discovery applications. Specifically, the invention relates to small nucleic acid molecules, such as short interfering nucleic acid (siNA), short interfering RNA (siRNA), double-stranded RNA (dsRNA), micro-RNA (miRNA), and short hairpin RNA (shRNA) molecules capable of mediating RNA interference (RNAi) against SNCA gene expression and/or activity. The small nucleic acid molecules are useful in the diagnosis and treatment of Parkinson Disease (PD), and any other disease or condition that responds to modulation of PARK1 (SNCA), PARK2, PARK7, and/or PARK5 expression or activity.
    Type: Application
    Filed: October 31, 2003
    Publication date: November 4, 2004
    Applicant: Sirna Therapeutics, Inc.
    Inventors: James McSwiggen, Peter Haeberli, Bharat Chowrira
  • Publication number: 20040192626
    Abstract: The present invention concerns methods and reagents useful in modulating gene expression in a variety of applications, including use in therapeutic, diagnostic, target validation, and genomic discovery applications. Specifically, the invention relates to synthetic chemically modified small nucleic acid molecules, such as short interfering nucleic acid (siNA), short interfering RNA (siRNA), double-stranded RNA (dsRNA), micro-RNA (miRNA), and short hairpin RNA (shRNA) molecules capable of mediating RNA interference (RNAi) against target nucleic acid sequences. The small nucleic acid molecules are useful in the treatment of any disease or condition that responds to modulation of gene expression or activity in a cell, tissue, or organism.
    Type: Application
    Filed: May 23, 2003
    Publication date: September 30, 2004
    Inventors: James McSwiggen, Bharat Chowrira, Leonid Beigelman, Dennis Macejak, Shawn Zinnen, Pamela Pavco, Peter Haeberli, David Morrissey, Kathy Fosnaugh, Sharon Jamison, Nassim Usman, James Thompson, Chandra Vargeese, Weimin Wang, Tongqian Chen, Narendra Vaish
  • Publication number: 20040110296
    Abstract: This invention features conjugates, degradable linkers, compositions, methods of synthesis, and applications thereof, including cholesterol, folate, galactose, galactosamine, N-acetyl galactosamine, PEG, phospholipid, peptide and human serum albumin (HSA) derived conjugates of biologically active compounds, including antibodies, antivirals, chemotherapeutics, peptides, proteins, hormones, nucleosides, nucleotides, non-nucleosides, and nucleic acids including enzymatic nucleic acids, DNAzymes, allozymes, antisense, dsRNA, siNA, siRNA, triplex oligonucleotides, 2,5-A chimeras, decoys and aptamers.
    Type: Application
    Filed: April 30, 2003
    Publication date: June 10, 2004
    Applicant: Ribozyme Pharmaceuticals, Inc.
    Inventors: Chandra Vargeese, Peter Haeberli, Weimin Wang, Tongqian Chen
  • Patent number: 6686463
    Abstract: The present invention provides methods for the chemical synthesis of nucleosides and derivatives thereof, including 2′-amino, 2′-N-phthaloyl, 2′-O-methyl, 2′-O-silyl, 2′-OH nucleosides, C-nucleosides, nucleoside phosphoramidites, C-nucleoside phosphoramidites, and non-nucleoside derivatives.
    Type: Grant
    Filed: August 31, 2001
    Date of Patent: February 3, 2004
    Assignee: Sirna Therapeutics, Inc.
    Inventors: Leonid Beigelman, Alexander Karpeisky, Vladmir Serebryany, Peter Haeberli, David Sweedler
  • Patent number: 6673611
    Abstract: This invention relates to novel chemically-modified nucleic acid molecules having specific formulae that exhibit increased resistance to nucleases and increased binding affinity to target nucleic acid molecules. The invention further relates to methods of modulating gene expression using the novel chemically modified nucleic acid molecules, and compositions and cells comprising said molecules.
    Type: Grant
    Filed: May 25, 2001
    Date of Patent: January 6, 2004
    Assignee: Sirna Therapeutics, Inc.
    Inventors: James Thompson, Leonid Beigelman, James McSwiggen, Alexander Karpeisky, Laurent Bellon, Mark Reynolds, Michael Zwick, Thale Jarvis, Tod Woolf, Peter Haeberli, Jasenka Matulic-Adamic
  • Publication number: 20030203870
    Abstract: The present invention relates to nucleic acid molecules, including antisense and enzymatic nucleic acid molecules, such as hammerhead ribozymes, DNAzymes, and antisense, which modulate the expression of NOGO and NOGO receptor genes.
    Type: Application
    Filed: May 6, 2003
    Publication date: October 30, 2003
    Applicant: Ribozyme Pharmaceuticals, Inc.
    Inventors: Lawrence Blatt, James McSwiggen, Bharat M. Chowrira, Peter Haeberli