Patents by Inventor Richard R. Bott

Richard R. Bott has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 6627744
    Abstract: The present invention relates to a chemically modified mutant protein including a cysteine residue substituted for a residue other than cysteine n a precursor protein, the substituted cysteine residue being subsequently modified by reacting the cysteine residue with a glycosylated thiosulfonate. Also a method of producing the chemically modified mutant protein is provided. The present invention also relates to a glycosylated methanethiosulfonate. Another aspect of the present invention is a method of modifying the functional characteristics of a protein including providing a protein and reacting the protein with a glycosylated methanethiosulfonate reagent under conditions effective to produce a glycoprotein with altered functional characteristics as compared to the protein. In addition, the present invention relates to methods of determining the structure-function relationships of chemically modified mutant proteins.
    Type: Grant
    Filed: April 2, 2001
    Date of Patent: September 30, 2003
    Assignee: Genencor International, Inc.
    Inventors: Benjamin G. Davis, John Bryan Jones, Richard R. Bott
  • Publication number: 20030180281
    Abstract: The present invention is related to topical preparations for release of an active agent and to methods of making and using the topical preparations. The preparations may have an internal phase dispersed within an external phase. The internal phase may be a hydrophilic carrier and an active agent. The external phase may be a silicone matrix. It is emphasized that this abstract is provided to comply with the rules requiring an abstract that will allow a searcher or other reader to quickly ascertain the subject matter of the technical disclosure. It is submitted with the understanding that is will not be used to interpret or limit the scope or meaning of the claims. 37 CFR 1.72(b).
    Type: Application
    Filed: March 10, 2003
    Publication date: September 25, 2003
    Inventors: Richard R. Bott, Mark S. Gebert, Paal Christian Klykken, Isabelle Mazeaud, Xavier Jean-Paul Thomas
  • Publication number: 20030171543
    Abstract: A high throughput mutagenesis screening method selects sites for saturation scanning using protein structural considerations. Site-saturation libraries are created and screened using assays for sites having protein properties of interest. The sites are categorized for the properties of interest, trends, if any, are identified; and, a variant having a desired property is selected for additional library creation procedures. The additional libraries are created using feedback from the determined categories. One set of additional libraries repeats construction of the previous libraries using the feedback. A second set of additional libraries are new libraries created at sites that are expected to be beneficial based on the feedback. The categories may be coded, using color or other indicia, to allow easy identification of trends.
    Type: Application
    Filed: March 5, 2002
    Publication date: September 11, 2003
    Inventors: Richard R. Bott, James T. Kellis, Thomas B. Morrison
  • Patent number: 6586221
    Abstract: Novel carbonyl hydrolase variants derived from the DNA sequences of naturally-occurring or recombinant non-human carbonyl hydrolases are disclosed. The variant carbonyl hydrolases, in general, are obtained by in vitro modification of a precursor DNA sequence encoding the naturally-occurring or recombinant carbonyl hydrolase to generate the substitution of a plurality of amino acid residues in the amino acid sequence of a precursor carbonyl hydrolase. Such variant carbonyl hydrolases have properties which are different from those of the precursor hydrolase, such as altered proteolytic activity, altered stability, etc.
    Type: Grant
    Filed: October 13, 1994
    Date of Patent: July 1, 2003
    Assignee: Genencor International, Inc.
    Inventors: Thomas P. Graycar, Richard R. Bott, Lori J. Wilson
  • Publication number: 20030077807
    Abstract: Novel carbonyl hydrolase variants derived from the DNA sequences of naturally-occurring or recombinant non-human carbonyl hydrolases are disclosed. The variant carbonyl hydrolases, in general, are obtained by in vitro modification of a precursor DNA sequence encoding the naturally-occurring or recombinant carbonyl hydrolase to generate the substitution of a plurality of amino acid residues in the amino acid sequence of a precursor carbonyl hydrolase. Such variant carbonyl hydrolases have properties which are different from those of the precursor hydrolase, such as altered proteolytic activity, altered stability, etc.
    Type: Application
    Filed: October 13, 1994
    Publication date: April 24, 2003
    Inventors: THOMAS P. GRAYCAR, RICHARD R. BOTT, LORI J. WILSON
  • Publication number: 20030027298
    Abstract: An enzymatic array is provided, which composition comprises one or more enzymes non-covalently bound to a peptide backbone, wherein at least one of the enzymes is heterologous to the peptide backbone and the peptide backbone is capable of having bound thereto a plurality of enzymes. The array is useful, for example, in recovery systems, targeted multi-enzyme delivery systems, soluble substrate modification, quantification type assays, and other applications in the food industry, feed, textiles, bioconversion, pulp and paper production, plant protection and pest control, wood preservatives, topical lotions and biomass conversions.
    Type: Application
    Filed: September 17, 2001
    Publication date: February 6, 2003
    Inventors: Richard R. Bott, Kathleen A. Clarkson, Timothy Fowler, Chung-Cheng Liu, Michael Ward, Hai-Ying Xia
  • Patent number: 6455288
    Abstract: The present invention relates to methods for immunoassay of analytes employing mutant glucose-6-phosphate dehydrogenase (G6PDH) enzymes as labels. In particular, the invention relates-to the use of conjugates of an analyte or analyte analog and a mutant NAD+ dependent G6PDH differing from any precursor G6PDH by the deletion, substitution, or insertion, or any combination thereof of at least one amino acid per subunit. The invention also involves the construction of several mutations in precursor glucose-6-phosphate dehydrogenase (G6PDH) enzymes. Typically, the mutations involve deletion or substitution of one or more lysine residues, or introduction of one or more cysteine residues by insertion of cysteine to precursor G6PDH or substitution of precursor G6PDH amino acids residues with cysteine.
    Type: Grant
    Filed: April 8, 1993
    Date of Patent: September 24, 2002
    Assignees: Dade Behring Marburg GmbH, Genencor International, Inc.
    Inventors: Edward Benjamin Jakobovits, Joy L. Silen, Mark J. Levy, Thomas C. Goodman, Martin Becker, Edwin F. Ullman, Robert M. Caldwell, Richard R. Bott, Christopher Charles Barnett
  • Publication number: 20020127695
    Abstract: This invention provides modified enzymes comprising one or more amino acid residues replaced by cysteine residues, where the cysteine residues are modified by replacing the thiol hydrogen in the cysteine residues with a substituent group providing a thiol side chain comprising a multiply charged moiety. The enzymes show improved interaction and/or specificity and/or activity with charged substrates.
    Type: Application
    Filed: February 12, 2002
    Publication date: September 12, 2002
    Applicant: GenenCor International, Inc.
    Inventors: Benjamin G. Davis, John Bryan Jones, Richard R. Bott
  • Patent number: 6379942
    Abstract: This invention provides modified enzymes comprising one or more amino acid residues replaced by cysteine residues, where the cysteine residues are modified by replacing the thiol hydrogen in the cysteine residues with a substituent group providing a thiol side chain comprising a multiply charged moiety. The enzymes show improved interaction and/or specificity and/or activity with charged substrates.
    Type: Grant
    Filed: December 20, 1999
    Date of Patent: April 30, 2002
    Assignee: Genencor International, Inc.
    Inventors: Benjamin G. Davis, John Bryan Jones, Richard R. Bott
  • Publication number: 20020019039
    Abstract: The present invention relates to a chemically modified mutant protein including a cysteine residue substituted for a residue other than cysteine n a precursor protein, the substituted cysteine residue being subsequently modified by reacting the cysteine residue with a glycosylated thiosulfonate. Also a method of producing the chemically modified mutant protein is provided. The present invention also relates to a glycosylated methanethiosulfonate. Another aspect of the present invention is a method of modifying the functional characteristics of a protein including providing a protein and reacting the protein with a glycosylated methanethiosulfonate reagent under conditions effective to produce a glycoprotein with altered functional characteristics as compared to the protein. In addition, the present invention relates to methods of determining the structure-function relationships of chemically modified mutant proteins.
    Type: Application
    Filed: April 2, 2001
    Publication date: February 14, 2002
    Inventors: Benjamin G. Davis, John Bryan Jones, Richard R. Bott
  • Patent number: 6277617
    Abstract: Modified enzymes are provided in which at least one amino acid, such as asparagine, leucine, methionine or serine, of an enzyme is replaced with a cysteine and the thiol hydrogen is replaced with a substituent group providing a thiol side chain selected from the group consisting of: a) —SR1R2, wherein R1 is an alkyl and R2 is a charged or polar moiety; b) —SR3, wherein R3 is a substituted or unsubstituted phenyl; c) —SR4, wherein R4 is substituted or unsubstituted cyclohexyl; d) —SR5, wherein R5 is C10-C15 alkyl; and e) —SR6 wherein R6 is a C1-6 alkyl. Also, methods of producing the modified enzymes are provided, as well as detergent and feed additives and a composition for the treatment of a textile. A method for using the modified enzymes in organic synthesis is additionally provided. Further, modified enzymes having improved activity, altered pH profile and/or wash performance are provided.
    Type: Grant
    Filed: November 25, 1997
    Date of Patent: August 21, 2001
    Assignees: Genencor International, Inc.
    Inventors: Richard R. Bott, Thomas P. Graycar, J. Bryan Jones, Colin Mitchinson
  • Patent number: 6090567
    Abstract: Methods for immunoassay of analytes employing mutant glucose-6-phosphate dehydrogenase (G6PDH) enzymes as labels. In particular, the invention relates to the use of conjugates of an analyte or analyte analog and a mutant NAD.sup.+ dependent G6PDH differing from any precursor G6PDH by the deletion, substitution, or insertion, or any combination thereof of at least one amino acid per subunit. The invention also involves the construction of several mutations in precursor glucose-6-phosphate dehydrogenase (G6PDH) enzymes. Typically, the mutations involve deletion or substitution of one or more lysine residues, or introduction of one or more cysteine residues by insertion of cysteine to precursor G6PDH or substitution of precursor G6PDH amino acids residues with cysteine.
    Type: Grant
    Filed: May 22, 1995
    Date of Patent: July 18, 2000
    Assignee: Behringwerke AG
    Inventors: Edward Benjamin Jakobovits, Joy L. Silen, Mark J. Levy, Thomas C. Goodman, Martin Becker, Edwin F. Ullman, Robert M. Caldwell, Richard R. Bott, Christopher Charles Barnett
  • Patent number: 6033890
    Abstract: The present invention relates to methods for immunoassay of analytes employing mutant glucose-6-phosphate dehydrogenase (G6PDH) enzymes as labels. In particular, the invention relates to the use of conjugates of an analyte or analyte analog and a mutant NAD.sup.+ dependent G6PDH differing from any precursor G6PDH by the deletion, substitution, or insertion, or any combination thereof of at least one amino acid per subunit. The invention also involves the construction of several mutations in precursor glucose-6-phosphate dehydrogenase (G6PDH) enzymes. Typically, the mutations involve deletion or substitution of one or more lysine residues, or introduction of one or more cysteine residues by insertion of cysteine to precursor G6PDH or substitution of precursor G6PDH amino acids residues with cysteine.
    Type: Grant
    Filed: May 22, 1995
    Date of Patent: March 7, 2000
    Assignee: Behring Diagnostics GmbH
    Inventors: Edward Benjamin Jakobovits, Joy L. Silen, Mark J. Levy, Thomas C. Goodman, Martin Becker, Edwin F. Ullman, Robert M. Caldwell, Richard R. Bott, Christopher Charles Barnett
  • Patent number: 5763385
    Abstract: Novel .alpha.-amylase enzymes are disclosed in which a new calcium binding site is modified by chemically or genetically altering residues associated with that calcium binding site. The novel .alpha.-amylases have altered performance characteristics, such as low pH starch hydrolysis performance, stability and activity profiles.
    Type: Grant
    Filed: May 14, 1996
    Date of Patent: June 9, 1998
    Assignee: Genencor International, Inc.
    Inventors: Richard R. Bott, Andrew Shaw
  • Patent number: 5441882
    Abstract: There are described methods for making mutant subtilisins, the methods comprising obtaining a DNA fragment from a Bacillus subtilisin and introducing a mutation into the fragment by substituting at least one amino acid, transforming a suitable host cell with the mutated DNA, recovering a mutant subtilisin and screening the mutant subtilisin for certain altered enzymatic properties.
    Type: Grant
    Filed: May 9, 1990
    Date of Patent: August 15, 1995
    Assignee: Genencor, Inc.
    Inventors: David A. Estell, James A. Wells, Richard R. Bott
  • Patent number: 5346823
    Abstract: There are provided methods for making a mutant Bacillus subtilisin having altered oxidative stability, the methods comprising obtaining DNA fragment consisting of a region coding for a Bacillus subtilisin, and introducing a mutation into said DNA fragment such that the mutation is introduced in a region encoding a methionine, tryptophan, cysteine or lysine, sensitive to oxidation, such that upon expression of the mutant subtilisin one or more codon regions encoding for methionine, tryptophan, cysteine or lysine is replaced with an amino acid other than methionine, tryptophan, cysteine or lysine, preferably alanine or serine.
    Type: Grant
    Filed: March 24, 1993
    Date of Patent: September 13, 1994
    Assignee: Genencor, Inc.
    Inventors: David A. Estell, James A. Wells, Richard R. Bott
  • Patent number: 5316941
    Abstract: There are described certain DNA sequences which encode subtilisins wherein the amino acid sequence of such substilisins has been modified at a position equivalent to +225 in Bacillus amyloliquefaciens, such that an amino acid selected from the group consisting of alanine, leucine, methionine, glutamine, valine and serine, has been substituted for the amino acid residues naturally occuring at such position.
    Type: Grant
    Filed: April 29, 1992
    Date of Patent: May 31, 1994
    Assignee: Genencor, Inc.
    Inventors: David A. Estell, Robert M. Caldwell, Richard R. Bott, Thomas P. Graycar
  • Patent number: 5182204
    Abstract: Novel carbonyl hydrolase mutants derived from the DNA sequences of naturally-occurring or recombinant non-human carbonyl hydrolases. The mutant carbonyl hydrolases, in general, are obtained by in vitro modification of a precursor DNA sequence encoding the naturally-occurring or recombinant carbonyl hydrolase to encode the substitution of an amino acid in the amino acid sequence of a precursor carbonyl hydrolase. Such mutants have properties which are different than the precursor hydrolase.
    Type: Grant
    Filed: December 11, 1991
    Date of Patent: January 26, 1993
    Assignee: Genencor International, Inc.
    Inventors: David A. Estell, Richard R. Bott, Scott D. Power, James A. Wells
  • Patent number: 5155033
    Abstract: There are described certain subtilisins wherein the amino acid sequence of such subtilisins has been modified at a position equivalent to +225 in Bacillus amyloliquefaciens, such that an amino acid selected from the group consisting of alanine, leucine, methionine, glutamine, valine, and serine, has been substituted for the amino acid residue naturally occurring at such position.
    Type: Grant
    Filed: January 6, 1989
    Date of Patent: October 13, 1992
    Assignee: Genencor, Inc.
    Inventors: David A. Estell, Robert M. Caldwell, Richard R. Bott, Thomas P. Graycar
  • Patent number: RE34606
    Abstract: A cloned subtilsin gene has been modified at specific sites to cause amino acid substitutions at certain spots in the enzyme. The modified enzyme, preferably produced by Bacillus, is useful in combination with detergents.
    Type: Grant
    Filed: July 20, 1990
    Date of Patent: May 10, 1994
    Assignee: Genencor, Inc.
    Inventors: David A. Estell, James A. Wells, Richard R. Bott