Patents by Inventor Robert G. Kuimelis

Robert G. Kuimelis has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20110183869
    Abstract: Methods of performing confocal laser microscopy on a polymer array disposed on a silicon wafer substrate, the method comprising the steps of providing a silicon wafer substrate having a top side and a bottom side, coating the top side of the silicon wafer with an oxide coating to provide an oxide coated wafer, covalently coupling a plurality of probes to the top side of the coated wafer to provide a fixed polymer array, hybridizing the fixed polymer array with a plurality of labeled ligands, and assaying for one or more hybridized ligands using confocal laser fluorescence microscopy to detect hybridization are provided.
    Type: Application
    Filed: January 27, 2011
    Publication date: July 28, 2011
    Applicant: Affymetrix, INC.
    Inventors: Robert G. Kuimelis, Zihui Chen, Glenn H. McGall
  • Patent number: 7951601
    Abstract: Methods of performing confocal laser microscopy on a polymer array disposed on a silicon wafer substrate, the method comprising the steps of providing a silicon wafer substrate having a top side and a bottom side, coating the top side of the silicon wafer with an oxide coating to provide an oxide coated wafer, covalently coupling a plurality of probes to the top side of the coated wafer to provide a fixed polymer array, hybridizing the fixed polymer array with a plurality of labeled ligands, and assaying for one or more hybridized ligands using confocal laser fluorescence microscopy to detect hybridization are provided.
    Type: Grant
    Filed: December 21, 2006
    Date of Patent: May 31, 2011
    Assignee: Affymetrix, Inc.
    Inventors: Robert G. Kuimelis, Zihui Chen, Glenn H. McGall
  • Publication number: 20110124526
    Abstract: Protective groups which may be cleaved with an activatable deprotecting reagents are employed to achieve a highly sensitive, high resolution, combinatorial synthesis of pattern arrays of diverse polymers. In preferred embodiments of the instant invention, the activatable deprotecting reagent is a photoacid generator and the protective groups are DMT for nucleic acids and tBOC for amino acids. This invention has a wide variety of applications and is particularly useful for the solid phase combinatorial synthesis of polymers.
    Type: Application
    Filed: January 21, 2011
    Publication date: May 26, 2011
    Applicant: Affymetrix, INC.
    Inventors: Robert G. Kuimelis, Glenn H. McGall, Martin J. Goldberg, Guangyu Xu
  • Patent number: 7910312
    Abstract: Protective groups which may be cleaved with an activatable deprotecting reagents are employed to achieve a highly sensitive, high resolution, combinatorial synthesis of pattern arrays of diverse polymers. In preferred embodiments of the instant invention, the activatable deprotecting reagent is a photoacid generator and the protective groups are DMT for nucleic acids and tBOC for amino acids. This invention has a wide variety of applications and is particularly useful for the solid phase combinatorial synthesis of polymers.
    Type: Grant
    Filed: July 16, 2010
    Date of Patent: March 22, 2011
    Assignee: Affymetrix, Inc.
    Inventors: Robert G. Kuimelis, Glenn H. McGall, Martin J. Goldberg, Guangyu Xu
  • Publication number: 20110046343
    Abstract: Methods are presented for generating large sets for polymers. The methods employ high density oligonucleotide array.
    Type: Application
    Filed: November 2, 2010
    Publication date: February 24, 2011
    Applicant: Affymetrix, INC.
    Inventors: Robert G. Kuimelis, Glenn H. McGall
  • Publication number: 20110046344
    Abstract: The present invention provides massively parallel oligonucleotide synthesis and purification for applications that utilize large collections of defined high-fidelity oligonucleotides (e.g., from about 101 to about 105 different sequences, generally between 25-160 bases in length).
    Type: Application
    Filed: November 2, 2010
    Publication date: February 24, 2011
    Applicant: Affymetrix, INC.
    Inventors: Robert G. Kuimelis, Glenn H. McGall
  • Patent number: 7892785
    Abstract: Described herein are methods and reagents for encoding and sorting in vitro translated proteins.
    Type: Grant
    Filed: August 13, 2002
    Date of Patent: February 22, 2011
    Assignee: Bristol-Myers Squibb Company
    Inventor: Robert G. Kuimelis
  • Publication number: 20110015098
    Abstract: Protective groups which may be cleaved with an activatable deprotecting reagents are employed to achieve a highly sensitive, high resolution, combinatorial synthesis of pattern arrays of diverse polymers. In preferred embodiments of the instant invention, the activatable deprotecting reagent is a photoacid generator and the protective groups are DMT for nucleic acids and tBOC for amino acids. This invention has a wide variety of applications and is particularly useful for the solid phase combinatorial synthesis of polymers.
    Type: Application
    Filed: July 16, 2010
    Publication date: January 20, 2011
    Applicant: Affymetrix, INC.
    Inventors: Robert G. Kuimelis, Glenn H. McGall, Martin J. Goldberg, Guangyu Xu
  • Patent number: 7862996
    Abstract: Protective groups which may be cleaved with an activatable deprotecting reagent are employed to achieve a highly sensitive, high resolution, combinatorial synthesis of pattern arrays of diverse polymers. In preferred embodiments of the instant invention, the activatable deprotecting reagent is a photoacid generator and the protective groups are DMT for nucleic acids and tBOC for amino acids. This invention has a wide variety of applications and is particularly useful for the solid phase combinatorial synthesis of polymers.
    Type: Grant
    Filed: December 28, 2006
    Date of Patent: January 4, 2011
    Assignee: Affymetrix, Inc.
    Inventors: Robert G. Kuimelis, Glenn H. McGall, Martin J. Goldberg, Guangyu Xu
  • Publication number: 20100305006
    Abstract: The present invention provides massively parallel oligonucleotide synthesis and purification for applications that utilize large collections of defined high-fidelity oligonucleotides (e.g., from about 101 to about 105 different sequences, generally between 25-160 bases in length).
    Type: Application
    Filed: August 12, 2010
    Publication date: December 2, 2010
    Applicant: Affymetrix, INC.
    Inventors: Robert G. Kuimelis, Glenn H. McGall
  • Patent number: 7803934
    Abstract: The present invention provides massively parallel oligonucleotide synthesis and purification for applications that utilize large collections of defined high-fidelity oligonucleotides (e.g., from about 101 to about 105 different sequences, generally between 25-160 bases in length).
    Type: Grant
    Filed: January 28, 2009
    Date of Patent: September 28, 2010
    Assignee: Affymetrix, Inc.
    Inventors: Glenn H. McGall, Robert G. Kuimelis
  • Publication number: 20090192050
    Abstract: The present invention provides massively parallel oligonucleotide synthesis and purification for applications that utilize large collections of defined high-fidelity oligonucleotides (e.g., from about 101 to about 105 different sequences, generally between 25-160 bases in length).
    Type: Application
    Filed: January 28, 2009
    Publication date: July 30, 2009
    Applicant: Affymetrix, INC.
    Inventors: Robert G. Kuimelis, Glenn H. McGall
  • Patent number: 7547775
    Abstract: The present invention provides massively parallel oligonucleotide synthesis and purification for applications that utilize large collections of defined high-fidelity oligonucleotides (e.g., from about 101 to about 105 different sequences, generally between 25-160 bases in length).
    Type: Grant
    Filed: January 3, 2006
    Date of Patent: June 16, 2009
    Assignee: Affymetrix, Inc.
    Inventors: Robert G. Kuimelis, Glenn H. McGall
  • Publication number: 20080139791
    Abstract: Disclosed herein are proteins that include an immunoglobulin fold and that can be used as scaffolds. Also disclosed herein are nucleic acids encoding such proteins and the use of such proteins in diagnostic methods and in methods for evolving novel compound-binding species and their ligands.
    Type: Application
    Filed: August 20, 2007
    Publication date: June 12, 2008
    Applicant: Adnexus Therapeutics, Inc.
    Inventors: Dasa Lipovsek, Richard W. Wagner, Robert G. Kuimelis
  • Publication number: 20070275411
    Abstract: Silanation compositions containing a mixture of two or more silanation reagents, where at least one silanation reagent includes a functional group capable of supporting polymer synthesis and at least one silanation reagent includes no functional group capable of supporting polymer synthesis are useful in modulating the active site density and hydrolytic stability of a surface. These compositions are particularly useful in silanating a surface prior to preparation of a polymer array and provide for increased hybridization results.
    Type: Application
    Filed: May 25, 2006
    Publication date: November 29, 2007
    Inventors: Glenn H. McGall, Robert G. Kuimelis
  • Patent number: 7115396
    Abstract: Disclosed herein are proteins that include an immunoglobulin fold and that can be used as scaffolds. Also disclosed herein are nucleic acids encoding such proteins and the use of such proteins in diagnostic methods and in methods for evolving novel compound-binding species and their ligands.
    Type: Grant
    Filed: December 3, 2003
    Date of Patent: October 3, 2006
    Assignee: Compound Therapeutics, Inc.
    Inventors: Dasa Lipovsek, Richard W. Wagner, Robert G. Kuimelis
  • Patent number: 6818418
    Abstract: Disclosed herein are proteins that include a fibronectin type III domain having at least one randomized loop. Also disclosed herein are nucleic acids encoding such proteins and the use of such proteins in diagnostic methods and in methods for evolving novel compound-binding species and their ligands.
    Type: Grant
    Filed: February 29, 2000
    Date of Patent: November 16, 2004
    Assignee: Compound Therapeutics, Inc.
    Inventors: Dasa Lipovsek, Richard W. Wagner, Robert G. Kuimelis
  • Publication number: 20040198963
    Abstract: In general, the invention features proteins having covalently bonded C-terminal puromycin tags and methods for their production.
    Type: Application
    Filed: December 8, 2003
    Publication date: October 7, 2004
    Inventors: Peter Lohse, Michael McPherson, Robert G. Kuimelis
  • Patent number: 6660473
    Abstract: In general, the invention features proteins having covalently bonded C-terminal puromycin tags and methods for their production.
    Type: Grant
    Filed: July 12, 2000
    Date of Patent: December 9, 2003
    Assignee: Phylos, Inc.
    Inventors: Peter Lohse, Michael McPherson, Robert G. Kuimelis
  • Publication number: 20030143616
    Abstract: Disclosed herein are arrays of nucleic acid-protein fusions which are immobilized to a solid surface through capture probes which include a non-nucleosidic spacer group and an oligonucleotide sequence to which the fusion (such as an RNA-protein fusion) is bound. Also disclosed herein are solid supports on which these arrays are immobilized as well as methods for their preparation and use (for example, for screening for protein-compound interactions such as protein-therapeutic compound interactions).
    Type: Application
    Filed: January 22, 2003
    Publication date: July 31, 2003
    Inventors: Robert G. Kuimelis, Richard Wagner