Patents by Inventor Ryan Mehl
Ryan Mehl has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).
-
Publication number: 20230405581Abstract: A method of forming a configurable substrate includes depositing a volume of trans-cyclooctene on a configurable substrate of a fluidic device, and forming a bioorthogonal tethered protein on the configurable substrate. The bioorthogonal tethered protein may be formed by attaching a tetrazine-modified protein or tetrazine-modified functional protein fragment to the trans-cyclooctene, wherein the tetrazine-modified protein or tetrazine-modified functional protein fragment is configured to bind to a target analyte.Type: ApplicationFiled: November 18, 2021Publication date: December 21, 2023Applicant: XBIOLOGIX, INC.Inventors: Ryan A. MEHL, Eduardo CEBALLOS, Kevin F. JONES
-
Publication number: 20230313180Abstract: Embodiments of the claimed invention describe methods for making a multimeric nanobody assembly. In some embodiments, a method for making a multimeric nanobody assembly comprises providing polynucleic acids that encode for nanobodies, wherein the polynucleic acids each further comprise at least one selector codon at a preselected position, providing a non-peptide linker comprising a strained alkene functional group, and providing a translational system, wherein the polynucleic acids are translated by the translational system to encode the nanobodies, and wherein the tetrazine amino acids react with the strained alkene functional group to produce the multimeric nanobody assembly.Type: ApplicationFiled: December 2, 2022Publication date: October 5, 2023Applicant: Oregon State UniversityInventors: Ryan A. Mehl, Elise M. Van Fossen, Riley M. Bednar
-
Publication number: 20210072238Abstract: Methods for immobilizing a protein or functional protein fragment on a surface in a controlled orientation, for immobilizing a protein or functional protein fragment on a surface with efficient immobilization loading of the protein or protein fragment, and for immobilizing a protein or functional protein fragment on a surface with retention of the activity of the protein or protein fragment. In the methods, a tetrazine-modified protein or a tetrazine-modified functional protein fragment is contacted with a trans-cyclooctene-modified surface to provide a surface having the protein or functional protein fragment immobilized thereon. Surfaces having a protein or functional protein fragment immobilized thereon obtainable by the method and methods for using the surfaces for measuring the binding of a ligand to a protein or functional protein fragment.Type: ApplicationFiled: September 9, 2020Publication date: March 11, 2021Applicant: Oregon State UniversityInventors: Ryan A. Mehl, Riley Matthew Bednar
-
Publication number: 20190382747Abstract: The present disclosure relates to compositions and methods for increasing the stability of an engineered protein by halogenating at least one amino acid residue of the protein to form a stabilizing hydrogen bond-enhanced halogen bond (HeX-B).Type: ApplicationFiled: June 18, 2019Publication date: December 19, 2019Applicants: Colorado State University Research Foundation, Oregon State UniversityInventors: Pui Shing Ho, Anna-Carin C. Carlsson, Matthew R. Scholfield, Melissa C. Ford, Rhianon Kay Rowe Hartje, Austin T. Alexander, Ryan A. Mehl
-
Publication number: 20190077776Abstract: Tetrazine non-canonical amino acids, methods for genetic encoding proteins and polypeptides using the tetrazine amino acids, proteins and polypeptides comprising the tetrazine amino acids, and compositions comprising the proteins and polypeptides having at least one post-translational modification thereof comprising in vivo reaction with the incorporated tetrazine amino acid and a second molecule.Type: ApplicationFiled: May 2, 2016Publication date: March 14, 2019Applicant: Oregon State UniversityInventors: Ryan A. Mehl, Robert Blizzard
-
Patent number: 9790305Abstract: The present invention is directed towards a protein-polymer composition having a protein with a site-specifically incorporated unnatural amino acid initiator and a covalently attached polymer.Type: GrantFiled: March 15, 2013Date of Patent: October 17, 2017Assignee: Franklin and Marshall CollegeInventors: Ryan A. Mehl, Krzysztof Matyjaszewski, Saadyah Averick
-
Publication number: 20160251467Abstract: The present invention is directed towards a protein-polymer composition having a protein with a site-specifically incorporated unnatural amino acid initiator and a covalently attached polymer.Type: ApplicationFiled: March 15, 2013Publication date: September 1, 2016Applicant: FRANKLIN AND MARSHALL COLLEGEInventors: Ryan A. Mehl, Krzysztof Matyjaszewski, Saadyah Averick
-
Patent number: 9243274Abstract: This invention pertains to methods for producing homogeneous recombinant proteins that contain polymer initiators at defined sites. The unnatural amino acid, 4-(2?-bromoisobutyramido)phenylalanine of formula 1, was designed and synthesized as a molecule comprising a functional group further comprising an initiator for an atom-transfer radical polymerization (‘ATRP”) that additionally would provide a stable linkage between the protein and growing polymer. We evolved a Methanococcus jannaschii (Mj) tyrosyl-tRNA synthetase/tRNACUA pair to genetically encode this unnatural amino acid in response to an amber codon. To demonstrate the utility of this functional amino acid, we produced Green Fluorescent Protein with the unnatural amino acid initiator of formula 1 site-specifically incorporated on its surface (GFP-1).Type: GrantFiled: August 5, 2014Date of Patent: January 26, 2016Assignee: Franklin and Marshall CollegeInventors: Ryan A. Mehl, Krzysztof Matyjaszewski, Saadyah Averick
-
Publication number: 20150152461Abstract: This invention pertains to methods for producing homogeneous recombinant proteins that contain polymer initiators at defined sites. The unnatural amino acid, 4-(2?-bromoisobutyramido)phenylalanine of formula 1, was designed and synthesized as a molecule comprising a functional group further comprising an initiator for an atom-transfer radical polymerization (‘ATRP”) that additionally would provide a stable linkage between the protein and growing polymer. We evolved a Methanococcus jannaschii (Mj) tyrosyl-tRNA synthetase/tRNACUA pair to genetically encode this unnatural amino acid in response to an amber codon. To demonstrate the utility of this functional amino acid, we produced Green Fluorescent Protein with the unnatural amino acid initiator of formula 1 site-specifically incorporated on its surface (GFP-1).Type: ApplicationFiled: August 5, 2014Publication date: June 4, 2015Applicant: FRANKLIN AND MARSHALL COLLEGEInventors: Ryan A. Mehl, Krzysztof Matyjaszewski, Saadyah Averick
-
Patent number: 8816001Abstract: This invention pertains to methods for producing homogeneous recombinant proteins that contain polymer initiators at defined sites. The unnatural amino acid, 4-(2?-bromoisobutyramido)phenylalanine of formula 1, was designed and synthesized as a molecule comprising a functional group further comprising an initiator for an atom-transfer radical polymerization (‘ATRP”) that additionally would provide a stable linkage between the protein and growing polymer. We evolved a Methanococcus jannaschii (Mj) tyrosyl-tRNA synthetase/tRNACUA pair to genetically encode this unnatural amino acid in response to an amber codon. To demonstrate the utility of this functional amino acid, we produced Green Fluorescent Protein with the unnatural amino acid initiator of formula 1 site-specifically incorporated on its surface (GFP-1).Type: GrantFiled: March 7, 2013Date of Patent: August 26, 2014Assignee: Franklin and Marshall CollegeInventors: Ryan A. Mehl, Krzysztof Matyjaszewski, Saadyah Averick
-
Publication number: 20140004591Abstract: The present invention is directed towards a protein-polymer composition having a protein with a site-specifically incorporated unnatural amino acid initiator and a covalently attached polymer.Type: ApplicationFiled: March 15, 2013Publication date: January 2, 2014Applicant: FRANKLIN AND MARSHALL COLLEGEInventors: Ryan A. Mehl, Krzysztof Matyjaszewski, Saadyah Averick
-
Publication number: 20130261259Abstract: This invention pertains to methods for producing homogeneous recombinant proteins that contain polymer initiators at defined sites. The unnatural amino acid, 4-(2?-bromoisobutyramido)phenylalanine of formula 1, was designed and synthesized as a molecule comprising a functional group further comprising an initiator for an atom-transfer radical polymerization (‘ATRP”) that additionally would provide a stable linkage between the protein and growing polymer. We evolved a Methanococcus jannaschii (Mj) tyrosyl-tRNA synthetase/tRNACUA pair to genetically encode this unnatural amino acid in response to an amber codon. To demonstrate the utility of this functional amino acid, we produced Green Fluorescent Protein with the unnatural amino acid initiator of formula 1 site-specifically incorporated on its surface (GFP-1).Type: ApplicationFiled: March 7, 2013Publication date: October 3, 2013Applicant: FRANKLIN AND MARSHALL COLLEGEInventors: Ryan A. Mehl, Krzysztof Matyjaszewski, Saadyah Averick
-
Publication number: 20120202243Abstract: The invention provides methods and compositions for in vivo incorporation of unnatural amino acids. Also provided are compositions including proteins with unnatural amino acids.Type: ApplicationFiled: August 2, 2011Publication date: August 9, 2012Applicants: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA, THE SCRIPPS RESEARCH INSTITUTEInventors: PETER G. SCHULTZ, LEI WANG, JOHN CHRISTOPHER ANDERSON, JASON WILLIAM CHIN, DAVID R. LIU, THOMAS J. MAGLIERY, ERIC L. MEGGERS, RYAN A. MEHL, MIRO PASTRNAK, STEPHEN WILLIAM SANTORO, ZHIWEN ZHANG
-
Patent number: 7776535Abstract: This invention relates, in part, to newly identified polynucleotides, polypeptides, variants and derivatives thereof; processes for making the polynucleotides and the polypeptides, and their variants and derivatives; and uses of the polynucleotides, polypeptides, variants and derivatives. The invention also relates to compositions of orthogonal aminoacyl-tRNA synthetases, and pairs of orthogonal aminoacyl-tRNA synthetases, and orthogonal tRNAs that incorporate fluorinated amino acids into proteins in response to selector codons. The present invention also includes translation biochemistry methods for site-specific incorporation of fluorinated amino acids, for example, 18F- or 19F-labelled amino acids, into proteins or peptides. Such amino acids may be used as an NMR probe for characterizing protein structure, dynamics, and reactivity or for radionuclide imaging (e.g., PET). Fluorinated amino acids may also be used to stabilize proteins or peptides.Type: GrantFiled: February 5, 2007Date of Patent: August 17, 2010Assignee: Franklin and Marshall CollegeInventor: Ryan A. Mehl
-
Publication number: 20090068717Abstract: The invention provides methods and compositions for in vivo incorporation of unnatural amino acids. Also provided are compositions including proteins with unnatural amino acids.Type: ApplicationFiled: October 26, 2007Publication date: March 12, 2009Applicants: The Scripps Research Institute, The Regents of The University of CaliforniaInventors: Peter Schultz, Lei Wang, John Christopher Anderson, Jason William Chin, David R. Liu, Thomas J. Magliery, Eric L. Meggers, Ryan A. Mehl, Miro Pastrnak, Stephen William Santoro, Zhiwen Zhang
-
Publication number: 20080261311Abstract: The invention provides methods and compositions for in vivo incorporation of unnatural amino acids. Also provided are compositions including proteins with unnatural amino acids.Type: ApplicationFiled: October 26, 2007Publication date: October 23, 2008Inventors: Peter Schultz, Lei Wang, John Christopher Anderson, Jason William Chin, David R. Liu, Thomas J. Magliery, Eric L. Meggers, Ryan A. Mehl, Miro Pastrnak, Stephen William Santoro, Zhiwen Zhang
-
Publication number: 20080227152Abstract: The invention provides methods and compositions for in vivo incorporation of unnatural amino acids. Also provided are compositions including proteins with unnatural amino acids.Type: ApplicationFiled: October 26, 2007Publication date: September 18, 2008Applicants: The Scripps Research Institute, The Regents of the University of CaliforniaInventors: Peter Schultz, Lei Wang, John Christopher Anderson, Jason William Chin, David R. Liu, Thomas J. Magliery, Eric L. Meggers, Ryan A. Mehl, Miro Pastrnak, Stephen William Santoro, Zhiwen Zhang
-
Publication number: 20080166783Abstract: The invention provides methods and compositions for in vivo incorporation of unnatural amino acids. Also provided are compositions including proteins with unnatural amino acids.Type: ApplicationFiled: May 4, 2007Publication date: July 10, 2008Applicant: The Scripps Research Institute and The Regents of the University of CaliforniaInventors: Peter Schultz, Lei Wang, John Christopher Anderson, Jason William Chin, David R. Liu, Thomas J. Magliery, Eric L. Meggers, Ryan A. Mehl, Miro Pastrnak, Stephen William Santoro, Zhiwen Zhang
-
Publication number: 20070218483Abstract: This invention relates, in part, to newly identified polynucleotides, polypeptides, variants and derivatives thereof; processes for making the polynucleotides and the polypeptides, and their variants and derivatives; and uses of the polynucleotides, polypeptides, variants and derivatives. The invention also relates to compositions of orthogonal aminoacyl-tRNA synthetases, and pairs of orthogonal aminoacyl-tRNA synthetases, and orthogonal tRNAs that incorporate fluorinated amino acids into proteins in response to selector codons. The present invention also includes translation biochemistry methods for site-specific incorporation of fluorinated amino acids, for example, 18F- or 19F-labelled amino acids, into proteins or peptides. Such amino acids may be used as an NMR probe for characterizing protein structure, dynamics, and reactivity or for radionuclide imaging (e.g., PET). Fluorinated amino acids may also be used to stabilize proteins or peptides.Type: ApplicationFiled: February 5, 2007Publication date: September 20, 2007Applicant: FRANKLIN AND MARSHALL COLLEGEInventor: Ryan Mehl
-
Publication number: 20070117184Abstract: The invention provides methods and compositions for in vivo incorporation of unnatural amino acids. Also provided are compositions including proteins with unnatural amino acids.Type: ApplicationFiled: October 18, 2006Publication date: May 24, 2007Inventors: Peter Schultz, Lei Wang, John Anderson, Jason Chin, David Liu, Thomas Magliery, Eric Meggers, Ryan Mehl, Miro Pastrnak, Stephen Santoro, Zhiwen Zhang