Patents by Inventor Sang Yup Lee

Sang Yup Lee has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20100035362
    Abstract: The present invention relates to a bio-silica chip comprising a silica-binding protein and a fabrication method thereof, and more particularly to a bio-silica chip in which a fusion protein of a silica-binding protein and a probe protein is immobilized on a chip comprising a silica layer, a fabrication method thereof and a method of using the bio-silica chip to detect interactions with biomaterials. The bio-silica chip will be very useful in biosensors, etc., because the bio-silica chip is advantageous in that it does not cause non-specific protein binding in the detection of protein-DNA, protein-ligand, protein-antibody, protein-peptide, protein-carbohydrate, protein-protein and cell-biomaterial interactions. Also, in the method for fabricating the bio-silica chip, a probe chip can be selectively immobilized on a silica device chip, which is widely used in biosensors, without a chemical surface treatment process.
    Type: Application
    Filed: March 24, 2009
    Publication date: February 11, 2010
    Inventors: Sang Yup Lee, Tae Jung Park, Yang Kyu Choi, Bon Sang Gu, Jae Hyuk Ahn
  • Publication number: 20100009432
    Abstract: Conductive carbon nanotubes (CNTs) obtained by dotting carboxylated CNTs with metal nanocrystals by chemical functional groups, are described, as well as a method for fabricating a pattern or film of the conductive CNTs which involves repeatedly depositing conductive CNTs on a substrate to achieve high surface density. A biosensor is described, in which bioreceptors that bind to target biomolecules are selectively attached to conductive CNTs or a conductive CNT pattern or film. By use of the conductive biosensor, various target biomaterials that bind or react with the bioreceptors can be precisely measured directly or by electrochemical signals at large amounts in one step. Additionally, the biosensor can be used for an electrical detection method capable of providing precise measurement results even with a small amount of source material.
    Type: Application
    Filed: June 3, 2004
    Publication date: January 14, 2010
    Inventors: Sang Yup Lee, Hee Tae Jung, Dae Hwan Jung, Young Koan Ko, Do Hyun Kim, Seok Jae Lee, Byung Hun Kim, Jae Shin Lee
  • Publication number: 20090305328
    Abstract: The present invention relates to a method for improving an organism through the profiling of flux sum of metabolites, and more particularly to a method for screening key metabolites, the method comprises: plotting a profile between objective functions based on useful substance formation rate as a main function through an algorithm perturbing other functions influencing the production of useful substance; determining the utilization (flux sum (?)) of all metabolites from the profile; and screening key metabolites, which show an increase in flux sum (?) with an increase in useful substance formation rate. The present invention also relates to a method for improving an organism producing a useful substance, the method comprises introducing and/or amplifying genes associated with the screened key metabolites or introducing the genes from the outside into the organism.
    Type: Application
    Filed: September 8, 2006
    Publication date: December 10, 2009
    Applicant: KOREA ADVANCED INSTITUTE OF SCIENCE AND TECHNOLOGY
    Inventors: Sang-Yup Lee, Tae Yong Kim, Dong-Yup Lee
  • Publication number: 20090305394
    Abstract: The present invention relates to oligonucleotides for diagnosis of corneal dystrophy. More particularly, the present invention relates to oligonucleotides for detecting mutation of BIGH3 gene for diagnosis or corneal dystrophy including Avellino corneal dystrophy, which must be precisely diagnosed before vision correction surgery, and a DNA chip for diagnosis of corneal dystrophy, which has the oligonucleotides fixed thereon. According to the present invention, conventional microscopic diagnosis of corneal dystrophy can be replaced with a precise genetic method, which prevents a patient with corneal dystrophy from losing eyesight by eyesight correction surgery after erroneous diagnosis.
    Type: Application
    Filed: January 18, 2007
    Publication date: December 10, 2009
    Applicant: MEDIGENES CO., LTD.
    Inventors: Sang Yup Lee, So Young Yoo, Eung Kweon Kim, Ki-Chang Keum, Won-Min Yoo, Nae-Choon Yoo
  • Publication number: 20090298706
    Abstract: The present invention relates to a method for expressing a target protein on the surface of a microorganism using Bacillus anthracis exosporium protein. More particularly, to an expression vector constructed such that it comprises bclA gene encoding Bacillus anthracis exosporium protein BclA or fragments thereof as a cell surface anchoring motif and the target protein can be expressed on the surface of a cell in a form fused with BclA or a fragment thereof when the gene encoding the target protein is expressed in a host cell, as well as, a method for expressing a target protein on the surface of a microorganism using the vector.
    Type: Application
    Filed: December 29, 2006
    Publication date: December 3, 2009
    Applicant: KOREA ADVANCED INSTITUTE OF SCIENCE AND TECHNOLOGY
    Inventors: Sang Yup Lee, Tae Jung Park, Nam Su Heo, Jong Hyun Choi
  • Publication number: 20090298070
    Abstract: The present invention relates to a method for analyzing metabolic flux using CRD and SRD. Specifically, the method comprising: selecting a specific target organism, constructing the metabolic network model of the selected organism, identifying the correlations between specific metabolic fluxes in the metabolic network model, defining the correlation ratios as CRD and SRD, determining the correlation ratios of the metabolic fluxes through the experiment for measuring metabolic flux ratios, modifying a stoichiometric matrix with the determined CRD, SRD and correlation ratios, and applying the modified stoichiometric matrix of the metabolic network model for linear programming. According to the inventice method, the correlation between influent/effluent metabolic fluxes with respect to specific metabolites in target organisms (including E.
    Type: Application
    Filed: September 8, 2006
    Publication date: December 3, 2009
    Applicant: Korea Advanced Institute of Science and Technology
    Inventors: Sang-Yup Lee, Hyung Seok Choi, Tae Yong Kim
  • Publication number: 20090269750
    Abstract: The present invention relates to a diagnostic cancer marker using variation of a granulocyte colony stimulating factor (G-CSF) gene and a method for preparing the same, and more specifically, relates to a method for diagnosing cancer and/or assessing the state of cancer progression using an oligonucleotide having the 3?-terminal end of exon 2 region linked to the 5?-terminal end of exon 4 region of a G-CSF gene as a diagnostic cancer marker. According to the present invention, cancer can be quickly and exactly diagnosed using variation in a G-CSF gene expression.
    Type: Application
    Filed: January 18, 2007
    Publication date: October 29, 2009
    Applicant: MEDIGENES CO., LTD.
    Inventors: Sang Yup Lee, Nae-Choon Yoo, So Young Yoo, Ki-Chang Keum, Won-Min Yoo
  • Patent number: 7595156
    Abstract: The present invention relates to the base sequence of whole genes involved in the biosynthesis of FR-008 polyketides derived from Streptomyces sp. FR-008. This base sequence comprises genes coding for ketosynthase (KS), acyl transferase (AT), acyl carrier protein (ACP), ketoreductase (KR), dehydratase (DH) and enoyl reductase (ER) domains, and genes coding for modifier enzymes, such as ABC transporter, cytochrome P450 monooxygenase, ferredoxin, thioesterase, sugar synthetic protein, FAD-dependent monooxygenase, 4-amino-4-deoxychorismate (ADC) synthase and ADC lyase. The gene base sequence according to the present invention can be used to increase the productivity of the existing FR-008 polyketides or produce new FR-008 polyketides, through modification of its parts.
    Type: Grant
    Filed: April 6, 2004
    Date of Patent: September 29, 2009
    Assignee: Korea Advanced Institute of Science and Technology
    Inventors: Sang Yup Lee, Zixin Deng, Shi Chen, Ki Jun Jeong, Xiufen Zhou
  • Patent number: 7588934
    Abstract: A nucleotide sequence encoding a fumarate hydratase C and a method for preparing succinic acid using the same, more particularly, a fumarate hydratase C having the activity of converting malate to fumarate, a fumC nucleotide sequence encoding the fumarate hydratase C, a recombinant vector containing the nucleotide sequence, a microorganism transformed with the recombinant vector, and a method for preparing succinic acid using the transformed microorganism.
    Type: Grant
    Filed: September 16, 2005
    Date of Patent: September 15, 2009
    Assignee: Korea Advanced Insitute of Science and Technology
    Inventor: Sang Yup Lee
  • Publication number: 20090215048
    Abstract: The present invention relates to an in silico method for improving an organism on the basis of the flux sum (?) of metabolites, and more particularly to a method for screening key metabolites that increase the production yield of a useful substance, the method comprising defining the metabolite utilization of an organism for producing a useful substance as flux sum and perturbing the flux sum, as well as a method for improving an organism producing a useful substance, the method comprising deleting and/or amplifying genes associated with the aforementioned screened key metabolites. According to the present invention, the correlation between specific metabolites and useful substance production can be exactly predicted, so that it is possible to develop an organism having increased useful substance production by introducing and/or amplifying and/or deleting genes expressing enzymes associated with the specific metabolites.
    Type: Application
    Filed: October 14, 2005
    Publication date: August 27, 2009
    Applicant: KOREA ADVANCED INSTITUTE OF SCIENCE AND TECHNOLOGY
    Inventors: Sang Yup Lee, Tae Yong Kim, Dong Yup Lee
  • Publication number: 20090203095
    Abstract: The present invention relates to a mutant microorganism, which is selected from the group consisting of genus Mannheimia, genus Actinobacillus and genus Anaerobiospirillum, producing homo-succinic acid and a method for producing homo-succinic acid using the same, and more particularly to a mutant microorganism producing succinic acid at a high concentration while producing little or no other organic acids in anaerobic conditions, which is obtained by disrupting a gene encoding lactate dehydrogenase (ldhA), a gene encoding phosphotransacetylase (pta), and a gene encoding acetate kinase (ackA), without disrupting a gene encoding pyruvate formate lyase (pfl), as well as a method for producing succinic acid using the same. The inventive mutant microorganism has the property of having a high growth rate and succinic acid productivity while producing little or no organic acids, as compared to the prior strains producing succinic acid.
    Type: Application
    Filed: January 25, 2009
    Publication date: August 13, 2009
    Applicant: KOREA ADVANCED INSTITUTE OF SCIENCE AND TECHNOLOGY
    Inventors: Sang Yup LEE, Sung Won LIM, Hyohak SONG
  • Patent number: 7572615
    Abstract: Nucleotide sequences encoding formate dehydrogenases D & E and a method for preparing succinic acid using the same, more particularly, formate dehydrogenases D & E converting formate to carbon dioxide and hydrogen, fdhD and fdhE nucleotide sequences encoding the formate dehydrogenases D & E, recombinant vectors containing the nucleotide sequences, microorganisms transformed with the recombinant vectors, and a method for preparing succinic acid using the transformed microorganism.
    Type: Grant
    Filed: April 20, 2007
    Date of Patent: August 11, 2009
    Assignee: Korea Advanced Institute of Science and Technology
    Inventors: Sang Yup Lee, Hyohak Song, Yu Sin Jang, Sung Won Lim
  • Publication number: 20090142804
    Abstract: The present invention relates to a process for preparing a serine-rich foreign protein comprising culturing a bacterium containing the cysteine synthase (cysK) gene and a gene encoding the serine-rich foreign protein. The present invention comprises the steps of culturing a bacterium transformed with an expression vector containing a gene encoding a serine-rich foreign protein and an expression vector containing the cysK gene, or a bacterium transformed with an expression vector containing the cysK gene and a gene encoding a serine-rich foreign protein and isolating the foreign protein therefrom. The present invention is expected to be widely used to increase the production yield of a serine-rich foreign protein.
    Type: Application
    Filed: November 14, 2008
    Publication date: June 4, 2009
    Applicant: Korea Advanced Institute of Science and Technology
    Inventors: Sang Yup LEE, Mee-Jung Han
  • Publication number: 20090136587
    Abstract: The present invention relates to a pharmaceutical composition for the treatment of nerve damage, and more particularly to a pharmaceutical composition for the treatment of nerve damage, which contains blood plasma or serum as an active ingredient. The inventive composition regenerates nerve cells after spinal nerve damage and provides complete structural continuity in the spinal nerve lesion sites. Thus, the composition is useful for the treatment of nerve damage.
    Type: Application
    Filed: August 8, 2006
    Publication date: May 28, 2009
    Applicant: MEDIGENES CO., LTD
    Inventors: Won Min Yoo, Nae Choon Yoo, Ki Chang Keum, Sang Yup Lee, Gene Lee
  • Publication number: 20090075352
    Abstract: The present invention is related to a method for improving a strain on the basis of in silico analysis, in which it compares the genomic information of a target strain for producing a useful substance to the genomic information of a strain overproducing the useful substance so as to primarily screen genes unnecessary for the overproduction of the useful substance, and then to secondarily screen genes to be deleted through performing simulation with metabolic flux analysis.
    Type: Application
    Filed: May 23, 2005
    Publication date: March 19, 2009
    Applicant: KOREA ADVANCED INSTITUTE OF SCIENCE AND TECHNOLOGY
    Inventors: Sang Yup Lee, Tae Yong Kim, Dong Yup Lee, Sang Jun Lee
  • Publication number: 20090053779
    Abstract: The present invention relates to mutant microorganisms having improved productivity of branched-chain amino acids, and a method for producing branched-chain amino acids using the mutant microorganisms. More specifically, relates to mutant microorganisms having improved productivity of L-valine, which are produced by attenuating or deleting a gene encoding an enzyme involved in L-isoleucine biosynthesis, a gene encoding an enzyme involved in L-leucine, and a gene encoding an enzyme involved in D-pantothenic acid biosynthesis, and mutating a gene encoding an enzyme involved in L-valine biosynthesis, such that the expression thereof is increased, as well as a method for producing L-valine using the mutant microorganisms. The inventive mutant microorganisms produced by site-specific mutagenesis and metabolic pathway engineering can produce branched-chain amino acids, particularly L-valine, with high efficiency, and thus will be useful as industrial microorganisms for producing L-valine.
    Type: Application
    Filed: March 14, 2007
    Publication date: February 26, 2009
    Applicant: Korea Advanced Institute of Science and Technology
    Inventors: Sang Yup Lee, Jin Hwan Park, Kwang Ho Lee, Tae Yong Kim
  • Patent number: 7491528
    Abstract: The present invention provides an expression vector comprising genes encoding OmpF of E. coli and a desired protein, E.coli transformed with the expression vector, and a method for extracellular production of desired proteins by employing the same. The recombinant expression vector of the invention comprises an ampicillin-resistance gene, the OmpF promoter and the OmpF gene. In accordance with the invention, a desired protein can be produced extracellularly by a simpler method than conventional methods such that: secretory production of OmpF fusion protein begins simultaneously with growth of the cells through constitutive expression employing an OmpF promoter, and as the concentration of cells increases, the amount of secretory production of the protein also increases continuously. Therefore, desired proteins can be produced in large quantities by a high concentration culture of cells.
    Type: Grant
    Filed: June 19, 2003
    Date of Patent: February 17, 2009
    Assignee: Korea Advanced Institute of Science and Technology
    Inventors: Sang-Yup Lee, Ki-Jun Jeong
  • Patent number: 7470770
    Abstract: A nucleotide sequence encoding a malic enzyme and a method for preparing succinic acid using the same, more particularly, a maeB nucleotide sequence encoding a malic enzyme B having the activity of converting pyruvic acid or pyruvate to malic acid or malate, or vice versa, a recombinant vector containing the gene, a microorganism transformed with the recombinant vector, and a method for preparing succinic acid using the transformed microorganism.
    Type: Grant
    Filed: September 16, 2005
    Date of Patent: December 30, 2008
    Assignee: Korea Advanced Institute of Science and Technology
    Inventors: Sang Yup Lee, Hyohak Song, Yu Sin Jang, Jeong Wook Lee
  • Patent number: 7470530
    Abstract: Provided are novel rumen bacterial mutants resulted from the disruption of a lactate dehydrogenase gene (ldhA) and a pyruvate formate-lyase gene (pfl) from rumen bacteria; a novel bacterial mutant (Mannheimia sp. LPK7) having disruptions of a ldhA, a pfl,a phosphotransacetylase gene (pta), and a acetate kinase gene (ackA); a novel bacterial mutant (Mannheimia sp. LPK4) having disruptions of a ldhA, a pfl, and a phosphoenolpyruvate carboxylase gene (ppc) involved in the immobilization of CO2 in a metabolic pathway of producing succinic acid; and a method for producing succinic acid, characterized by culture of the above mutants in anaerobic conditions. The bacterial mutants have the property of producing succinic acid at high concentration while producing little or no organic acids, as compared to the prior wild-type strains of producing various organic acids. Thus, the bacterial mutants are useful as strains for the industrial production of succinic acid.
    Type: Grant
    Filed: May 20, 2004
    Date of Patent: December 30, 2008
    Assignee: Korea Advanced Institute of Science and Technology
    Inventors: Sang Yup Lee, Sang Jun Lee
  • Publication number: 20080220490
    Abstract: The present invention relates to a method for improving useful substance-producing organisms using metabolic flux analysis, and more particularly to a method for improving a host organism producing a useful substance, the method comprising: calculating a maximum flux value corresponding to the theoretical maximum yield of the useful substance in the metabolic network model of the host organism for producing useful substance, and calculating the optimum value of metabolic flux associated with useful substance production in the metabolic network when the value of cell growth-associated metabolic flux is the maximum under the condition where fermentation data are applied or not applied; selecting metabolic fluxes whose absolute values increase from the range between the maximum value and the optimum value; screening genes associated with the selected metabolic fluxes; and introducing and/or amplifying the selected genes in the host organism.
    Type: Application
    Filed: September 15, 2005
    Publication date: September 11, 2008
    Inventors: Sang Yup Lee, Han Min Woo, Hyung Seok Choi