Patents by Inventor Sean Michael Boyle

Sean Michael Boyle has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20230115039
    Abstract: The disclosure provides methods for predicting surface-presenting peptides using binding and surface-presentation characteristics. The method can include accessing a trained machine-learning model that is configured to generate an output that indicates an extent to which the one or more expression levels and the one or more peptide-presentation metrics are related in accordance with a population-level relationship between expression and presentation. For each peptide of the set of peptides for a tissue sample, a score can be determined using the machine-learning model and genomic and transcriptomic data corresponding to the peptide. The score is predictive of whether a corresponding peptide is a surface-presenting peptide that binds to an MHC molecule and is presented on a cell surface.
    Type: Application
    Filed: December 13, 2022
    Publication date: April 13, 2023
    Applicant: Personalis, Inc.
    Inventors: Charles Wilbur ABBOTT, III, Sean Michael BOYLE, Rachel Marty PYKE, Eric LEVY, Dattatreya MELLACHERUVU, Rena MCCLORY, Richard CHEN, Robert POWER, Gabor BARTHA, Jason HARRIS, Pamela MILANI, Prateek TANDON, Paul MCNITT, Massimo MORRA, Sejal DESAI, Juan-Sebastian SALVIDAR, Michael CLARK, Christian HAUDENSCHILD, John WEST, Nick PHILLIPS, Simo V. ZHANG
  • Publication number: 20230050395
    Abstract: Methods for generating a composite biomarker that identifies a predicted level of responsiveness of a subject to a particular type of an immunotherapy treatment is provided. The method can include generating genomic metrics that represent one or more characteristics corresponding to one or more DNA sequences. The method can also include generating transcriptomic metrics represent one or more characteristics corresponding to a set of peptides that are translated from a corresponding RNA sequence of the one or more RNA sequences. The method can also include generating a composite biomarker score derived from the set of genomic metrics and the set of transcriptomic metrics. The method can also include determining, based on the composite biomarker score, a predicted level of responsiveness of the subject to a particular type of an immunotherapy treatment.
    Type: Application
    Filed: October 13, 2022
    Publication date: February 16, 2023
    Applicant: Personalis, Inc.
    Inventors: Charles Wilbur ABBOTT, III, Sean Michael BOYLE, Rachel Marty PYKE, Eric LEVY, Dattatreya MELLACHERUVU, Rena MCCLORY, Richard CHEN, Robert POWER, Gabor BARTHA, Jason HARRIS, Pamela MILANI, Prateek TANDON, Paul MCNITT, Massimo MORRA, Sejal DESAI, Juan-Sebastian SALVIDAR, Michael CLARK, Christian HAUDENSCHILD, John WEST, Nick PHILLIPS, Simo V. ZHANG
  • Patent number: 11186560
    Abstract: Compositions and methods for repelling arthropods. The compositions include a carrier and an arthropod repelling compound, which can be a compound discovered by a novel and complex cheminformatic process to demonstrate repellency behavior across a broad spectrum of arthropods. The compound can be a thiane compound, a pyrrolidone compound, a cyclohexadiene compound, a cyclohexenone compound, a cyclohexene compound, a furanone compound, a pyran compound, a tetrahydropyran compound, a thiazolidine compound, a thiazoline compound, a dihydrothiophene compound, a dithiolane compound, a dithiane compound, an epoxide compound, an oxathiane compound, a cyclopentene compound, a cyclohexane compound, a quinoline compound, an oxazoline compound, a tetrahydropyridine compound, and an imidazolidinone compound, or a combination thereof.
    Type: Grant
    Filed: February 28, 2019
    Date of Patent: November 30, 2021
    Assignee: The Regents of the University of California
    Inventors: Anandasankar Ray, Christine Krause Pham, Sean Michael Boyle
  • Publication number: 20210112839
    Abstract: The invention provides improved natural sweetener compositions comprising certain isolated compounds and their derivatives. The present invention also includes ingestible compositions comprising the present compounds and methods of sweetening the sweet taste of consumable materials.
    Type: Application
    Filed: December 29, 2020
    Publication date: April 22, 2021
    Inventors: Anandasankar RAY, Sean Michael BOYLE
  • Patent number: 10768168
    Abstract: Provided herein are screening methods for identifying compounds for use as an arthropod repellent based on the masking or inhibition of the detection of the skin odor by a cpA neuron. Provided herein are also screening methods for identifying compounds for use as an arthropod attractant based on activation of the cpA neuron. Further provided are one or more compounds identified using the screening methods described herein, and compositions containing such compounds.
    Type: Grant
    Filed: December 21, 2017
    Date of Patent: September 8, 2020
    Assignee: The Regents of the University of California
    Inventors: Anandasankar Ray, Sean Michael Boyle, Dyan MacWilliam, Genevieve Mitchell Tauxe
  • Publication number: 20200054018
    Abstract: The disclosure provides compounds useful as insect repellents, compositions comprising such repellents, and methods of repelling an arthropod using such compounds and compositions. The disclosure further provides insect traps and method for identifying ligands and cognates for biological molecules.
    Type: Application
    Filed: March 27, 2019
    Publication date: February 20, 2020
    Applicant: The Regents of the University of California
    Inventors: Anandasankar RAY, Sean Michael BOYLE
  • Publication number: 20190194158
    Abstract: Compositions and methods for repelling arthropods. The compositions include a carrier and an arthropod repelling compound, which can be a compound discovered by a novel and complex cheminformatic process to demonstrate repellency behavior across a broad spectrum of arthropods. The compound can be a thiane compound, a pyrrolidone compound, a cyclohexadiene compound, a cyclohexenone compound, a cyclohexene compound, a furanone compound, a pyran compound, a tetrahydropyran compound, a thiazolidine compound, a thiazoline compound, a dihydrothiophene compound, a dithiolane compound, a dithiane compound, an epoxide compound, an oxathiane compound, a cyclopentene compound, a cyclohexane compound, a quinoline compound, an oxazoline compound, a tetrahydropyridine compound, and an imidazolidinone compound, or a combination thereof.
    Type: Application
    Filed: February 28, 2019
    Publication date: June 27, 2019
    Applicant: The Regents of the University of California
    Inventors: Anandasankar RAY, Christine KRAUSE PHAM, Sean Michael BOYLE
  • Patent number: 10292396
    Abstract: The disclosure provides compounds useful as insect repellents, compositions comprising such repellents, and methods of repelling an arthropod using such compounds and compositions. The disclosure further provides insect traps and method for identifying ligands and cognates for biological molecules.
    Type: Grant
    Filed: September 28, 2016
    Date of Patent: May 21, 2019
    Assignee: The Regents of the University of California
    Inventors: Anandasankar Ray, Sean Michael Boyle
  • Publication number: 20180188235
    Abstract: Provided herein are screening methods for identifying compounds for use as an arthropod repellent based on the masking or inhibition of the detection of the skin odor by a cpA neuron. Provided herein are also screening methods for identifying compounds for use as an arthropod attractant based on activation of the cpA neuron. Further provided are one or more compounds identified using the screening methods described herein, and compositions containing such compounds.
    Type: Application
    Filed: December 21, 2017
    Publication date: July 5, 2018
    Applicant: The Regents of the University of California
    Inventors: Anandasankar RAY, Sean Michael BOYLE, Dyan MACWILLIAM, Genevieve Mitchell TAUXE
  • Publication number: 20180132516
    Abstract: The invention provides natural allosteric modulators that are useful as sweet flavor enhancers. The present invention also includes ingestible compositions comprising the present compounds and methods of enhancing the sweet taste of sweeteners and sugars.
    Type: Application
    Filed: November 16, 2017
    Publication date: May 17, 2018
    Inventors: Anandasankar RAY, Sean Michael BOYLE
  • Publication number: 20180132514
    Abstract: The invention provides improved natural sweetener compositions comprising certain isolated compounds and their derivatives. The present invention also includes ingestible compositions comprising the present compounds and methods of sweetening the sweet taste of consumable materials.
    Type: Application
    Filed: November 16, 2017
    Publication date: May 17, 2018
    Inventors: Anandasankar RAY, Sean Michael BOYLE
  • Patent number: 9897592
    Abstract: Provided herein are screening methods for identifying compounds for use as an arthropod repellent based on the masking or inhibition of the detection of the skin odor by a cpA neuron. Provided herein are also screening methods for identifying compounds for use as an arthropod attractant based on activation of the cpA neuron. Further provided are one or more compounds identified using the screening methods described herein, and compositions containing such compounds.
    Type: Grant
    Filed: April 21, 2017
    Date of Patent: February 20, 2018
    Assignee: The Regents of the University of California
    Inventors: Anandasankar Ray, Sean Michael Boyle, Dyan MacWilliam, Genevieve Mitchell Tauxe
  • Publication number: 20170369468
    Abstract: Compositions and methods for repelling arthropods. The compositions include a carrier and an arthropod repelling compound, which can be a compound discovered by a novel and complex cheminformatic process to demonstrate repellency behavior across a broad spectrum of arthropods. The compound can be a thiane compound, a pyrrolidone compound, a cyclohexadiene compound, a cyclohexenone compound, a cyclohexene compound, a furanone compound, a pyran compound, a tetrahydropyran compound, a thiazolidine compound, a thiazoline compound, a dihydrothiophene compound, a dithiolane compound, a dithiane compound, an epoxide compound, an oxathiane compound, a cyclopentene compound, a cyclohexane compound, a quinoline compound, an oxazoline compound, a tetrahydropyridine compound, and an imidazolidinone compound, or a combination thereof.
    Type: Application
    Filed: September 1, 2017
    Publication date: December 28, 2017
    Applicant: The Regents of the University of California
    Inventors: Anandasankar Ray, Christine Krause Pham, Sean Michael Boyle
  • Publication number: 20170292944
    Abstract: Provided herein are screening methods for identifying compounds for use as an arthropod repellent based on the masking or inhibition of the detection of the skin odor by a cpA neuron. Provided herein are also screening methods for identifying compounds for use as an arthropod attractant based on activation of the cpA neuron. Further provided are one or more compounds identified using the screening methods described herein, and compositions containing such compounds.
    Type: Application
    Filed: April 21, 2017
    Publication date: October 12, 2017
    Applicant: The Regents of the University of California
    Inventors: Anandasankar RAY, Sean Michael BOYLE, Dyan MACWILLIAM, Genevieve Mitchell TAUXE
  • Publication number: 20170079274
    Abstract: The disclosure provides compounds useful as insect repellents, compositions comprising such repellents, and methods of repelling an arthropod using such compounds and compositions. The disclosure further provides insect traps and method for identifying ligands and cognates for biological molecules.
    Type: Application
    Filed: September 28, 2016
    Publication date: March 23, 2017
    Applicant: The Regents of the University of California
    Inventors: Anandasankar RAY, Sean Michael BOYLE
  • Patent number: 9491942
    Abstract: The disclosure provides compounds useful as insect repellents, compositions comprising such repellents, and methods of repelling an arthropod using such compounds and compositions. The disclosure further provides insect traps and method for identifying ligands and cognates for biological molecules.
    Type: Grant
    Filed: October 17, 2012
    Date of Patent: November 15, 2016
    Assignee: The Regents of the University of California
    Inventors: Anandasankar Ray, Sean Michael Boyle
  • Publication number: 20160272612
    Abstract: Compositions and methods for repelling arthropods. The compositions include a carrier and an arthropod repelling compound, which can be a compound discovered by a novel and complex cheminformatic process to demonstrate repellency behavior across a broad spectrum of arthropods. The compound can be a thiane compound, a pyrrolidone compound, a cyclohexadiene compound, a cyclohexenone compound, a cyclohexene compound, a furanone compound, a pyran compound, a tetrahydropyran compound, a thiazolidine compound, a thiazoline compound, a dihydrothiophene compound, a dithiolane compound, a dithiane compound, an epoxide compound, an oxathiane compound, a cyclopentene compound, a cyclohexane compound, a quinoline compound, an oxazoline compound, a tetrahydropyridine compound, and an imidazolidinone compound, or a combination thereof.
    Type: Application
    Filed: March 18, 2016
    Publication date: September 22, 2016
    Applicant: The Regents of the University of California
    Inventors: Anandasankar Ray, Christine Krause Pham, Sean Michael Boyle
  • Patent number: 9307763
    Abstract: The disclosure provides compounds useful as insect repellents and compositions comprising such repellents. The disclosure further provides insect traps and method for identifying ligands and cognates for biological molecules.
    Type: Grant
    Filed: November 13, 2014
    Date of Patent: April 12, 2016
    Assignee: The Regents of the University of California
    Inventors: Anandasankar Ray, Sean Michael Boyle
  • Publication number: 20160003805
    Abstract: Provided herein are screening methods for identifying compounds for use as an arthropod repellent based on the masking or inhibition of the detection of the skin odor by a cpA neuron. Provided herein are also screening methods for identifying compounds for use as an arthropod attractant based on activation of the cpA neuron. Further provided are one or more compounds identified using the screening methods described herein, and compositions containing such compounds.
    Type: Application
    Filed: September 15, 2015
    Publication date: January 7, 2016
    Applicant: THE REGENTS OF THE UNIVERSITY OF CALIFORNIA
    Inventors: Anandasankar RAY, Sean Michael BOYLE, Dyan MACWILLIAM, Genevieve Mitchell TAUXE
  • Publication number: 20150223458
    Abstract: The disclosure provides compounds useful as insect repellents and compositions comprising such repellents. The disclosure further provides insect traps and method for identifying ligands and cognates for biological molecules.
    Type: Application
    Filed: November 13, 2014
    Publication date: August 13, 2015
    Applicant: The Regents of the University of California
    Inventors: Anandasankar RAY, Sean Michael BOYLE