Abstract: A method and system is provided for integrated crop quality management and crop certification comprises of selecting a geographical area for growing a crop, auto assisting a user to select a crop certification of the selected geographical area, generating a customized crop protocol and training calendar, enabling implementation of the steps involved in growing the crop, adapting to crop compliance of the crop in the selected geographical area, generating a plurality of periodic compliance alerts for different stages of the crop for growth monitoring, tracking a plurality of action items depicting goals on the generated periodic alerts to maintain a crop compliance business logic of the crop, generating a crop certification compliance score and index for the crop compliance certificate of the crop, transferring the crop certification compliance score and index to the certifying agency for validating and generating a crop compliance certificate.