Abstract: A method and apparatus for cleaning a membrane bioreactor having a stack of generally vertically oriented membrane filter plates mounted in a filtration chamber containing wastewater. In a first cleaning phase, air is supplied to a first discharge zone under the stack to discharge gas bubbles into the wastewater at the bottom of the stack so that the gas bubbles rise upwardly through passages between the filter plates to scour surfaces of the membranes bounding the passages. In a second cleaning phase, gas is supplied to a second discharge zone at the bottom of the stack and surrounding it to cause air lift induced circulation of the wastewater up around the sides of the stack and downwardly through the passages between the filter plates to eject accumulated fibrous material from the passages and to scour surfaces of the membranes bounding the passages.