Patents by Inventor Sushma Pati

Sushma Pati has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20060228799
    Abstract: The invention relates to compositions and methods for targeting sequence modifications in one or more genes of a related family of genes using enhanced homologous recombination techniques. These techniques may be used to create animal or plant models of disease as well as to identify new targets for drug or pathogen screening.
    Type: Application
    Filed: October 5, 2005
    Publication date: October 12, 2006
    Inventors: Sushma Pati, David Zarling, Christopher Lehman, Hong Zeng
  • Publication number: 20050214944
    Abstract: The invention relates to methods for targeting an exogenous polynucleotide or exogenous complementary polynucleotide pair to a predetermined endogenous DNA target sequence in a target cell by homologous pairing, particularly for altering an endogenous DNA sequence, such as a chromosomal DNA sequence, typically by targeted homologous recombination. In certain embodiments, the invention relates to methods for targeting an exogenous polynucleotide having a linked chemical substituent to a predetermined endogenous DNA sequence in a metabolically active target cell, generating a DNA sequence-specific targeting of one or more chemical substituents in an intact nucleus of a metabolically active target cell, generally for purposes of altering a predetermined endogenous DNA sequence in the cell.
    Type: Application
    Filed: October 25, 2004
    Publication date: September 29, 2005
    Inventors: David Zarling, Elissa Sena, Sushma Pati
  • Publication number: 20040231010
    Abstract: The present invention provides transgenic ungulates that include a transgene that encodes lysozyme, and further has an attenuated or non-functional &bgr;-lactoglobulin allele. The invention further provides methods for producing such animals. The invention further provides methods of producing a food product, such as milk, or a milk product, using a subject transgenic ungulate, as well as food products harvested from a subject transgenic ungulate.
    Type: Application
    Filed: January 7, 2004
    Publication date: November 18, 2004
    Inventors: James D. Murray, Gary B. Anderson, Elizabeth A. Maga, Sushma Pati, David A. Zarling
  • Publication number: 20040091885
    Abstract: The invention relates to compositions and methods for targeting sequence modifications in one or more genes of a related family of genes using enhanced homologous recombination techniques. These techniques may be used to create animal or plant models of disease as well as to identify new targets for drug or pathogen screening.
    Type: Application
    Filed: February 24, 2003
    Publication date: May 13, 2004
    Applicant: Pangene Corporation
    Inventors: Sushma Pati, David A. Zarling, Christopher W. Lehman, Hong Zeng
  • Publication number: 20040023213
    Abstract: Compositions and methods are provided for rapidly evolving specific protein domains employing a recombinase and recombination intermediates.
    Type: Application
    Filed: June 20, 2001
    Publication date: February 5, 2004
    Applicant: Pangene Corporation
    Inventors: David Zarling, Gurucharan Reddy, Sushma Pati
  • Publication number: 20030124505
    Abstract: The invention relates to the use of high-throughput methods for gene targeting, recombination, phenotype screening and biovalidation of drug targets utilizing enhanced homologous recombination (EHR) techniques. These methods utilize robotically driven multichannel pipetters to perform liquid, particle, cell and organism handling, robotically controlled plate and sample handling platforms, magnetic probes and affinity probes to selectively capture nucleic acid hybrids, and thermally regulated plates or blocks for temperature controlled reactions.
    Type: Application
    Filed: March 22, 2000
    Publication date: July 3, 2003
    Inventors: Sarita Kumari Jain, Elizabeth Anne Allen, Sushma Pati, Roy Geoffrey Sargent, David A. Zarling
  • Publication number: 20030105039
    Abstract: The invention relates to methods for targeting an exogenous polynucleotide or exogenous complementary polynucleotide pair to a predetermined endogenous DNA target sequence in a target cell by homologous pairing, particularly for altering an endogenous DNA sequence, such as a chromosomal DNA sequence, typically by targeted homologous recombination. In certain embodiments, the invention relates to methods for targeting an exogenous polynucleotide having a linked chemical substituent to a predetermined endogenous DNA sequence in a metabolically active target cell, generating a DNA sequence-specific targeting of one or more chemical substituents in an intact nucleus of a metabolically active target cell, generally for purposes of altering a predetermined endogenous DNA sequence in the cell.
    Type: Application
    Filed: November 20, 2001
    Publication date: June 5, 2003
    Inventors: David A. Zarling, Elissa P. Sena, Sushma Pati
  • Publication number: 20030082551
    Abstract: The invention relates to the use of high-throughput methods for gene targeting, recombination, phenotype screening and biovalidation of drug targets utilizing enhanced homologous recombination (EHR) techniques. These methods utilize robotically driven multichannel pipetters to perform liquid, particle, cell and organism handling, robotically controlled plate and sample handling platforms, magnetic probes and affinity probes to selectively capture nucleic acid hybrids, and thermally regulated plates or blocks for temperature controlled reactions.
    Type: Application
    Filed: September 28, 2001
    Publication date: May 1, 2003
    Inventors: David A. Zarling, Ron Caspi, Kathryn M. Stephens, Roy G. Sergeant, Christopher Lehman, Sushma Pati
  • Patent number: 6524856
    Abstract: The invention relates to compositions and methods for targeting sequence modifications in one or more genes of a related family of genes using enhanced homologous recombination techniques. These techniques may be used to create animal or plant models of disease as well as to identify new targets for drug or pathogen screening.
    Type: Grant
    Filed: December 11, 1998
    Date of Patent: February 25, 2003
    Assignee: Pangene Corporation
    Inventors: Sushma Pati, David A. Zarling, Hong Zeng
  • Publication number: 20020152494
    Abstract: A method comprising: a) altering a chromosomal sequence of a donor nucleus of a donor cell by introducing a pair of single-stranded targeting polynucleotides, and a recombinase into said donor nucleus of said donor cell, wherein said pair of targeting polynucleotides are substantially complementary to each other and each comprising a homology clamp that substantially corresponds to or is substantially complementary to a predetermined DNA sequence of said nucleus; and, b) transplanting said nucleus into an oocyte to produce a recombinant zygote.
    Type: Application
    Filed: December 23, 1999
    Publication date: October 17, 2002
    Inventors: ROY GEOFFREY SARGENT, ANNE KATHRYN VALLERGA, SUSHMA PATI, DAVID ALAN ZARLING
  • Publication number: 20020108136
    Abstract: The invention relates to methods and compositions for producing transgenic animals by targeted homologous recombination comprising targeting an exogenous polynucleotide or exogenous complementary polynucleotide pair to a predetermined endogenous DNA target sequence in a target cell by homologous pairing, particularly for altering an endogenous DNA sequence, such as a chromosomal DNA sequence. In certain embodiments, the invention relates to compositions that contain exogenous targeting polynucleotides, complementary pairs of exogenous targeting polynucleotides, chemical substituents of such polynucleotides, and recombinase proteins used in the methods of the invention.
    Type: Application
    Filed: August 9, 2001
    Publication date: August 8, 2002
    Applicant: SRI
    Inventors: Sushma Pati, David Zarling
  • Publication number: 20020032530
    Abstract: The present invention is directed to methods and systems for integrating the provision of genomics services and the production of genomics products. In one aspect of the invention, a method is provided for integrated genomic services comprising (a) receiving a first request from a customer, wherein said request comprises a first nucleic acid sequence, and an order for at least two genomics products or services; and (b) utilizing said nucleic acid sequence to provide said at least two genomics services or products.
    Type: Application
    Filed: February 12, 2001
    Publication date: March 14, 2002
    Inventors: Sushma Pati, Raya Zion, Ian Alexander Fairwether Black, Christopher Lehman, Ron Caspi, Kathryn M. Stephens, David Zarling
  • Publication number: 20010044107
    Abstract: The present invention is directed to the use of recombinases such as E. coli recA to mediate the detection of target sequences on gene chips.
    Type: Application
    Filed: December 28, 2000
    Publication date: November 22, 2001
    Inventors: David A. Zarling, Gurucharan Reddy, Sushma Pati
  • Patent number: 6200812
    Abstract: The invention relates to methods for targeting an exogenous polynucleotide or exogenous complementary polynucleotide pair to a predetermined endogenous DNA target sequence in a target cell by homologous pairing, particularly for altering an endogenous DNA sequence, such as a chromosomal DNA sequence, typically by targeted homologous recombination. In certain embodiments, the invention relates to methods for targeting an exogenous polynucleotide having a linked chemical substituent to a predetermined endogenous DNA sequence in a metabolically active target cell, generating a DNA sequence-specific targeting of one or more chemical substituents in an intact nucleus of a metabolically active target cell, generally for purposes of altering a predetermined endogenous DNA sequence in the cell.
    Type: Grant
    Filed: April 8, 1999
    Date of Patent: March 13, 2001
    Assignee: SRI International
    Inventors: Sushma Pati, David A. Zarling
  • Patent number: 6074853
    Abstract: The invention relates to methods for targeting an exogenous polynucleotide or exogenous complementary polynucleotide pair to a predetermined endogenous DNA target sequence in a target cell by homologous pairing, particularly for altering an endogenous DNA sequence, such as a chromosomal DNA sequence, typically by targeted homologous recombination. In certain embodiments, the invention relates to methods for targeting an exogenous polynucleotide having a linked chemical substituent to a predetermined endogenous DNA sequence in a metabolically active target cell, generating a DNA sequence-specific targeting of one or more chemical substituents in an intact nucleus of a metabolically active target cell, generally for purposes of altering a predetermined endogenous DNA sequence in the cell.
    Type: Grant
    Filed: August 14, 1998
    Date of Patent: June 13, 2000
    Assignee: SRI
    Inventors: Sushma Pati, David A. Zarling
  • Patent number: 5948653
    Abstract: The invention relates to methods for targeting an exogenous polynucleotide or exogenous complementary polynucleotide pair to a predetermined endogenous DNA target sequence in a target cell by homologous pairing, particularly for altering an endogenous DNA sequence, such as a chromosomal DNA sequence, typically by targeted homologous recombination. In certain embodiments, the invention relates to methods for targeting an exogenous polynucleotide having a linked chemical substituent to a predetermined endogenous DNA sequence in a metabolically active target cell, generating a DNA sequence-specific targeting of one or more chemical substituents in an intact nucleus of a metabolically active target cell, generally for purposes of altering a predetermined endogenous DNA sequence in the cell.
    Type: Grant
    Filed: August 13, 1997
    Date of Patent: September 7, 1999
    Inventors: Sushma Pati, David A. Zarling