Patents by Inventor Theo Kotseroglou

Theo Kotseroglou has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 9528152
    Abstract: In some embodiments, an analyte detection system is provided that includes a nanochannel, an electrode arrangement, and a plurality of nanoFET devices disposed in the nanochannel. A plurality of nucleic acid base detection components can be used that include a plurality of nanopores, a plurality of nanochannels, a plurality of hybridization probes, combinations thereof, and the like. According to other embodiments of the present teachings, different coded molecules are hybridized to a target DNA molecule and used to detect the presence of various sequences along the target molecule. A kit including mixtures of coded molecules is also provided. In some embodiments, devices including nanochannels, nanopores, and the like, are used for manipulating movement of DNA molecules, for example, in preparation for a DNA sequencing detection. Nanopore structures and methods of making the same are also provided as are methods of nucleic acid sequencing using the nanopore structures.
    Type: Grant
    Filed: December 2, 2014
    Date of Patent: December 27, 2016
    Assignee: Life Technologies Corporation
    Inventors: Hongye Sun, Mark F. Oldham, John O'Neill, Charles R. Connell, Umberto Ulmanella, Aldrich N. K. Lau, Theo Kotseroglou, Kenneth J. Livak
  • Publication number: 20150218630
    Abstract: In some embodiments, an analyte detection system is provided that includes a nanochannel, an electrode arrangement, and a plurality of nanoFET devices disposed in the nanochannel. A plurality of nucleic acid base detection components can be used that include a plurality of nanopores, a plurality of nanochannels, a plurality of hybridization probes, combinations thereof, and the like. According to other embodiments of the present teachings, different coded molecules are hybridized to a target DNA molecule and used to detect the presence of various sequences along the target molecule. A kit including mixtures of coded molecules is also provided. In some embodiments, devices including nanochannels, nanopores, and the like, are used for manipulating movement of DNA molecules, for example, in preparation for a DNA sequencing detection. Nanopore structures and methods of making the same are also provided as are methods of nucleic acid sequencing using the nanopore structures.
    Type: Application
    Filed: December 2, 2014
    Publication date: August 6, 2015
    Inventors: Hongye SUN, Mark F. Oldham, John O'Neill, Charles R. Connell, Umberto Ulmanella, Aldrich N.K. Lau, Theo Kotseroglou, Kenneth J. Livak
  • Patent number: 8592214
    Abstract: Disclosed herein are systems for monitoring chemical reactions. The systems can comprise a lighting device, a camera device for obtaining an image of the chemical reaction mixtures and an analyzer program to process data obtained from the image. Also disclosed are methods of monitoring the progress of chemical reactions using these systems.
    Type: Grant
    Filed: February 11, 2011
    Date of Patent: November 26, 2013
    Assignee: Illumina, Inc.
    Inventors: David Louis Heiner, Steven P. Fambro, Theo Kotseroglou, Michal Lebl
  • Publication number: 20110136684
    Abstract: Disclosed herein are systems for monitoring chemical reactions. The systems can comprise a lighting device, a camera device for obtaining an image of the chemical reaction mixtures and an analyzer program to process data obtained from the image. Also disclosed are methods of monitoring the progress of chemical reactions using these systems.
    Type: Application
    Filed: February 11, 2011
    Publication date: June 9, 2011
    Inventors: David Louis Heiner, Steven P. Fambro, Theo Kotseroglou, Michal Lebl
  • Patent number: 7887752
    Abstract: Disclosed herein are systems for monitoring chemical reactions. The systems can comprise a lighting device, a camera device for obtaining an image of the chemical reaction mixtures and an analyzer program to process data obtained from the image. Also disclosed are methods of monitoring the progress of chemical reactions using the these systems.
    Type: Grant
    Filed: January 21, 2004
    Date of Patent: February 15, 2011
    Assignee: Illumina, Inc.
    Inventors: David Louis Heiner, Steven P. Fambro, Theo Kotseroglou, Michal Lebl
  • Patent number: 7799527
    Abstract: The invention provides systems and methods for evaluating synthetic reactions such as polymer synthesis reactions. Evaluation of a synthetic reaction product can be based on a quantitative measure of synthesis such as coupling efficiency or yield, and various parameters determined from a separation record obtained for the synthetic reaction product. The invention further provides methods for evaluating a separation method based on various parameters determined from a separation record. The invention can be used to select an appropriate treatment for a synthetic reaction product such as a separation treatment or treatments related to further processing for the desired product. The methods are particularly useful for automated selection of treatments for synthetic reaction products.
    Type: Grant
    Filed: July 1, 2005
    Date of Patent: September 21, 2010
    Assignee: Illumina, Inc.
    Inventors: Nels A. Olson, Bahram Ghaffarzadeh Kermani, Hongji Ren, Theo Kotseroglou
  • Publication number: 20070003941
    Abstract: The invention provides systems and methods for evaluating synthetic reactions such as polymer synthesis reactions. Evaluation of a synthetic reaction product can be based on a quantitative measure of synthesis such as coupling efficiency or yield, and various parameters determined from a separation record obtained for the synthetic reaction product. The invention further provides methods for evaluating a separation method based on various parameters determined from a separation record. The invention can be used to select an appropriate treatment for a synthetic reaction product such as a separation treatment or treatments related to further processing for the desired product. The methods are particularly useful for automated selection of treatments for synthetic reaction products.
    Type: Application
    Filed: July 1, 2005
    Publication date: January 4, 2007
    Applicant: Illumina, Inc.
    Inventors: Nels Olson, Bahram Kermani, Hongji Ren, Theo Kotseroglou
  • Publication number: 20040219063
    Abstract: An apparatus for parallel monitoring of a plurality of chemical reactions, each chemical reaction occurring within a respective one of a plurality of wells. The apparatus includes a lighting device for illuminating the plurality of wells, the lighting device having an light emitting diode (LED) array, a camera device configured to obtain images of the plurality of wells and saving the images to an image storage location, the camera device having a charge couple device (CCD) capable of imaging the plurality of wells simultaneously, a viewing program for viewing one or more of the saved images, and an analyzing program for opening each saved image and geometrically registering each saved image in order to determine a specific value corresponding to each one of the chemical reactions at the time the image was obtained, the analyzing program saving the specific values to an analysis results storage location. A method of utilizing the apparatus is also disclosed.
    Type: Application
    Filed: January 21, 2004
    Publication date: November 4, 2004
    Inventors: David Louis Heiner, Steven P. Fambro, Theo Kotseroglou, Michal Lebl