Patents by Inventor Thomas McClure

Thomas McClure has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Patent number: 9299547
    Abstract: A mass spectrometric analysis method comprises: (1) processing a mass spectrum to reduce the signals to monoisotopic values; (2) creating a list of differences between the monoisotopic values; (3) creating one or more lists of theoretical mass-to-charge differences among known adducts, charge states and polymerization states whose formation may be expected from various analyte molecules; (4) comparing the theoretical differences (line or edge in the network) to the list of differences from the mass spectrum and, where applicable, make and tabulate tentative species assignments; (5) assigning the mass spectral peaks to respective ion species in accordance with the redundancy of each assignment based on multiple independent calculated mass-to-charge differences pertaining to each peak; (6) choosing an ion species for further fragmentation or reaction in the mass spectrometer, based on the assigning; and (7) performing the fragmentation or reaction on the chosen ion species in the mass spectrometer.
    Type: Grant
    Filed: September 22, 2015
    Date of Patent: March 29, 2016
    Assignee: Thermo Finnigan LLC
    Inventors: Thomas McClure, Michael J. Athanas, Matthew Kump
  • Publication number: 20160013038
    Abstract: A mass spectrometric analysis method comprises: (1) processing a mass spectrum to reduce the signals to monoisotopic values; (2) creating a list of differences between the monoisotopic values; (3) creating one or more lists of theoretical mass-to-charge differences among known adducts, charge states and polymerization states whose formation may be expected from various analyte molecules; (4) comparing the theoretical differences (line or edge in the network) to the list of differences from the mass spectrum and, where applicable, make and tabulate tentative species assignments; (5) assigning the mass spectral peaks to respective ion species in accordance with the redundancy of each assignment based on multiple independent calculated mass-to-charge differences pertaining to each peak; (6) choosing an ion species for further fragmentation or reaction in the mass spectrometer, based on the assigning; and (7) performing the fragmentation or reaction on the chosen ion species in the mass spectrometer.
    Type: Application
    Filed: September 22, 2015
    Publication date: January 14, 2016
    Inventors: Thomas McCLURE, Michael J. ATHANAS, Matthew KUMP
  • Patent number: 9159538
    Abstract: A mass spectrometric analysis method comprises: (1) processing a mass spectrum to reduce the signals to monoisotopic values; (2) creating a list of differences between the monoisotopic values; (3) creating one or more lists of theoretical mass-to-charge differences among known adducts, charge states and polymerization states whose formation may be expected from various analyte molecules; (4) comparing the theoretical differences (line or edge in the network) to the list of differences from the mass spectrum and, where applicable, make and tabulate tentative species assignments; and (5) assigning the mass spectral peaks to respective ion species in accordance with the redundancy of each assignment based on multiple independent calculated mass-to-charge differences pertaining to each peak.
    Type: Grant
    Filed: June 11, 2014
    Date of Patent: October 13, 2015
    Assignee: Thermo Finnigan LLC
    Inventors: Thomas McClure, Michael J. Athanas, Matthew Kump
  • Patent number: 7158862
    Abstract: A method, system, and computer program product for mining mass spectral data to detect chemical-specific characteristic features in large databases and/or files, including specifying spectral characteristics of mass spectra to mine, specifying a relationship between the spectral characteristics, searching the mass spectra for portions of the mass spectra which match the spectral characteristics based on the relationship, and assigning scores to the portions of mass spectra to indicate a degree of correlation between the portions of mass spectra and the spectral characteristics. Exemplary embodiments encompass a user specification of the spectral characteristics and their relationships used to mine the mass spectral data, automated specification of the spectral characteristics and their relationships used to mine the data, and real-time data mining wherein the mass spectrometer is adjusted based on the result.
    Type: Grant
    Filed: June 11, 2001
    Date of Patent: January 2, 2007
    Assignee: The Arizona Board of Regents on Behalf of the University of Arizona
    Inventors: Daniel C. Liebler, Beau T. Hansen, Daniel E. Mason, Sean W. Davey, Juliet A. Jones, Thomas McClure
  • Publication number: 20060272737
    Abstract: An apparatus for prevention of corrosion with the cooling system of an internal combustion engine is disclosed. The apparatus includes a pressurized inert gas source and a fluid delivery system whereby the gas is dispersed within the cooling system to expel corrosion inducing fluids such as oxygen and water vapor.
    Type: Application
    Filed: May 2, 2006
    Publication date: December 7, 2006
    Inventor: Thomas McClure
  • Publication number: 20060241926
    Abstract: Methods, systems, and computer program products for generating theoretical mass spectral fragmentation patterns of a chemical structure is provided. The method includes obtaining a description of a chemical structure and generating, from the description, a list of chemical structure information. A binary tree data structure is used to organize the list of chemical structure information. The binary tree data structure may be fragmented by determining, based on a set of predetermined rules, a fragmentation point between two nodes in the binary tree data structure thereby dividing the binary tree data structure into a fragment and a complement. The molecular formula and molecular weight of each fragment is determined. The binary tree data structure is traversed and appropriate fragmentation rules are applied to produce a plurality of theoretical molecular fragments.
    Type: Application
    Filed: April 22, 2005
    Publication date: October 26, 2006
    Inventors: Lynde Nottebaum, Thomas McClure
  • Publication number: 20050067045
    Abstract: An apparatus and method for prevention of corrosion with the cooling system of an internal combustion engine is disclosed. The apparatus includes a pressurized inert gas source and a fluid delivery system whereby the gas is dispersed within the cooling system to expel corrosion inducing fluids such as oxygen and water vapor. Methods of use are also disclosed.
    Type: Application
    Filed: September 30, 2003
    Publication date: March 31, 2005
    Inventor: Thomas McClure
  • Publication number: 20020023078
    Abstract: A method, system, and computer program product for mining mass spectral data to detect chemical-specific characteristic features in large databases and/or files, including specifying spectral characteristics of mass spectra to mine, specifying a relationship between the spectral characteristics, searching the mass spectra for portions of the mass spectra which match the spectral characteristics based on the relationship, and assigning scores to the portions of mass spectra to indicate a degree of correlation between the portions of mass spectra and the spectral characteristics. Exemplary embodiments encompass a user specification of the spectral characteristics and their relationships used to mine the mass spectral data, automated specification of the spectral characteristics and their relationships used to mine the data, and real-time data mining wherein the mass spectrometer is adjusted based on the result.
    Type: Application
    Filed: June 11, 2001
    Publication date: February 21, 2002
    Applicant: THE ARIZONA BOARD OF REGENTS...OF ARIZONA
    Inventors: Daniel C. Liebler, Beau T. Hansen, Daniel E. Mason, Sean N. Davey, Juliet A. Jones, Thomas McClure