Patents by Inventor Thomas W. Dubensky

Thomas W. Dubensky has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20120039932
    Abstract: Lentiviral vector particles comprising a Sindbis virus E2 glycoprotein variant and a lentiviral vector genome comprising a sequence of interest are provided. A lentiviral vector particle comprising: (a) an envelope comprising a Sindbis virus E2 glycoprotein variant; and (b) a lentiviral vector genome comprising a sequence of interest; wherein the E2 glycoprotein variant facilitates infection of dendritic cells by the lentiviral vector particle, and wherein the E2 glycoprotein variant has reduced binding to heparan sulfate compared to a reference sequence (HR strain).
    Type: Application
    Filed: October 20, 2011
    Publication date: February 16, 2012
    Applicant: IMMUNE DESIGN CORP.
    Inventors: James M. Allen, Thomas W. Dubensky, JR., Jin Zhong Li, Derek D. Sloan, Neal S. Van Hoeven
  • Publication number: 20110287055
    Abstract: The invention provides recombinant Listeria that constitutively express Prf A and comprise polynucleotides that encode polypeptides such as tumor or infectious agent antigens, operably linked to a PrfA responsive regulatory agent. Methods of using the Listeria, and compositions thereof, to induce or enhance an immune response and/or in the treatment of disease are provided. Methods of producing the bacteria are also provided.
    Type: Application
    Filed: May 18, 2009
    Publication date: November 24, 2011
    Applicant: ADURO BIOTECH
    Inventors: Peter M. Lauer, Thomas W. Dubensky, JR., Justin Skoble, Dirk G. Brockstedt, William Stanford Luckett, JR., William Hanson
  • Publication number: 20110245480
    Abstract: The invention provides a bacterium containing a polynucleotide comprising a nucleic acid encoding a heterologous antigen, as well as fusion protein partners. Also provided are vectors for mediating site-specific recombination and vectors comprising removable antibiotic resistance genes.
    Type: Application
    Filed: May 2, 2011
    Publication date: October 6, 2011
    Inventors: Thomas W. Dubensky, JR., Justin Skoble, Peter M. Lauer, David N. Cook
  • Publication number: 20110201092
    Abstract: The present invention provides Listeria that are attenuated for entry into non-phagocytic cells as well as a variety of methods of inducing immune responses involving administering compositions comprising the attenuated Listeria. Some of the attenuated Listeria are mutant Listeria that comprise at least one mutation in a gene encoding an invasin, such as an internalin. Some of the attenuated Listeria are further attenuated for cell-to-cell spread. Pharmaceutical compositions and vaccines useful in the methods of the invention are further provided. Methods of making and improving vaccines are also provided.
    Type: Application
    Filed: March 29, 2010
    Publication date: August 18, 2011
    Inventors: Thomas W. Dubensky, JR., Dirk G. Brockstedt, David N. Cook
  • Patent number: 7977091
    Abstract: The present disclosure provides compositions and methods for utilizing recombinant alphavirus vectors. Also disclosed are compositions and methods for making and utilizing eukaryotic layered vector initiation systems.
    Type: Grant
    Filed: August 10, 2009
    Date of Patent: July 12, 2011
    Assignee: Novartis Vaccines & Diagnostics, Inc.
    Inventors: Thomas W. Dubensky, Jr., John M Polo, Carlos E Ibanez, Stephen M. W. Chang, Douglas J Jolly, David A Driver, Barbara A Belli
  • Patent number: 7935804
    Abstract: The invention provides a bacterium containing a polynucleotide comprising a nucleic acid encoding a heterologous antigen, as well as fusion protein partners. Also provided are vectors for mediating site-specific recombination and vectors comprising removable antibiotic resistance genes.
    Type: Grant
    Filed: March 30, 2006
    Date of Patent: May 3, 2011
    Assignee: Aduro BioTech
    Inventors: Thomas W. Dubensky, Jr., Justin Skoble, Peter M. Lauer, David N. Cook
  • Patent number: 7927606
    Abstract: Free-living microbes are provided in which the nucleic acid has been modified so that the microbe is attenuated for proliferation and/or which comprise genetic mutations that attenuate the ability of the microbe to repair its nucleic acid. Methods of using the modified microbes for the loading, activation, and/or maturation of antigen-presenting cells are also provided. Vaccine compositions comprising the modified microbes and/or the antigen-presenting cells and methods of using the vaccines are also provided. The microbes may be further modified to include heterologous antigens, such as tumor antigens or infectious disease antigens, for use as a vaccine against cancer or infectious diseases.
    Type: Grant
    Filed: August 11, 2006
    Date of Patent: April 19, 2011
    Assignee: Aduro Biotech
    Inventors: Thomas W. Dubensky, Jr., Dirk G. Brockstedt, Keith S. Bahjat, John E. Hearst, David N. Cook, William S. Luckett, Jr.
  • Publication number: 20110064763
    Abstract: Lentiviral vector particles comprising a Sindbis virus E2 glycoprotein variant and a lentiviral vector genome comprising a sequence of interest are provided. A lentiviral vector particle comprising: (a) an envelope comprising a Sindbis virus E2 glycoprotein variant; and (b) a lentiviral vector genome comprising a sequence of interest; wherein the E2 glycoprotein variant facilitates infection of dendritic cells by the lentiviral vector particle, and wherein the E2 glycoprotein variant has reduced binding to heparan sulfate compared to a reference sequence (HR strain).
    Type: Application
    Filed: July 23, 2010
    Publication date: March 17, 2011
    Applicant: IMMUNE DESIGN CORP.
    Inventors: James M. Allen, Thomas W. Dubensky, JR., Jin Zhong Li, Derek D. Sloan, Neal S. Van Hoeven
  • Publication number: 20100330121
    Abstract: Isolated nucleic acid molecules are disclosed, comprising an alphavirus nonstructural protein gene which, when operably incorporated into a recombinant alphavirus particle, eukaryotic layered vector initiation system, or RNA vector replicon, has a reduced level of vector-specific RNA synthesis, as compared to wild-type, and the same or greater level of proteins encoded by RNA transcribed from the viral junction region promoter, as compared to a wild-type recombinant alphavirus particle. Also disclosed are RNA vector replicons, alphavirus vector constructs, and eukaryotic layered vector initiation systems which contain the above-identified nucleic acid molecules.
    Type: Application
    Filed: July 28, 2010
    Publication date: December 30, 2010
    Applicants: NOVARTIS VACCINES AND DIAGNOSTICS, INC., WASHINGTON UNIVERSITY
    Inventors: Thomas W. Dubensky, JR., John M. Polo, Barbara A. Belli, Sergey A. Dryga, Sondra Schlessinger, Ilya Frolov
  • Patent number: 7842289
    Abstract: The present invention provides recombinant nucleic acid molecules, expression cassettes, and vectors useful for expression of polypeptides, including heterologous polypeptides, such as antigens, in bacteria. Some of the recombinant nucleic acid molecules, expression cassettes and vectors comprise codon-optimized sequences encoding the polypeptides and/or signal peptides. Some of the recombinant nucleic acid molecules, expression cassettes, and expression vectors comprise sequences encoding non-Listerial and/or non-secA1 signal peptides for secretion of the polypeptides. The invention also provides bacteria comprising the nucleic acid molecules, expression cassettes, and expression vectors, as well as compositions such as vaccines comprising the bacteria. Methods of making and using the bacteria, recombinant nucleic acid molecules, and expression cassettes are also provided.
    Type: Grant
    Filed: December 23, 2004
    Date of Patent: November 30, 2010
    Assignee: Aduro BioTech
    Inventors: Thomas W. Dubensky, Jr., Daniel A. Portnoy, William S. Luckett, Jr., David N. Cook
  • Patent number: 7833775
    Abstract: Free-living microbes are provided in which the nucleic acid has been modified so that the microbe is attenuated for proliferation and/or which comprise genetic mutations that attenuate the ability of the microbe to repair its nucleic acid. Methods of using the modified microbes for the loading, activation, and/or maturation of antigen-presenting cells are also provided. Vaccine compositions comprising the modified microbes and/or the antigen-presenting cells and methods of using the vaccines are also provided. The microbes may be further modified to include heterologous antigens, such as tumor antigens or infectious disease antigens, for use as a vaccine against cancer or infectious diseases.
    Type: Grant
    Filed: February 6, 2004
    Date of Patent: November 16, 2010
    Assignee: Aduro BioTech
    Inventors: Thomas W. Dubensky, Jr., Dirk G. Brockstedt, John E. Hearst, David N. Cook
  • Publication number: 20100266631
    Abstract: Compositions and methods are provided for Eukaryotic Layered Vector Initiation Systems and Alphavirus replicon particles for introducing heterologous sequences into cells for generating immune responses.
    Type: Application
    Filed: June 29, 2010
    Publication date: October 21, 2010
    Applicant: NOVARTIS VACCINES AND DIAGNOSTICS, INC.
    Inventors: John Polo, Thomas W. Dubensky, JR., Ilya Frolov, Jason P. Gardner, Gillis Otten, Susan Barnett, David A. Driver
  • Patent number: 7811812
    Abstract: Isolated nucleic acid molecules are disclosed, comprising an alphavirus nonstructural protein gene which, when operably incorporated into a recombinant alphavirus particle, eukaryotic layered vector initiation system, or RNA vector replicon, has a reduced level of vector-specific RNA synthesis, as compared to wild-type, and the same or greater level of proteins encoded by RNA transcribed from the viral junction region promoter, as compared to a wild-type recombinant alphavirus particle. Also disclosed are RNA vector replicons, alphavirus vector constructs, and eukaryotic layered vector initiation systems which contain the above-identified nucleic acid molecules.
    Type: Grant
    Filed: March 17, 2003
    Date of Patent: October 12, 2010
    Assignee: Novartis Vaccines & Diagnostics, Inc.
    Inventors: Thomas W. Dubensky, Jr., John M. Polo, Barbara A. Belli, Sondra Schlesinger, Sergey A. Drvga, Ilya Frolov
  • Publication number: 20100233212
    Abstract: Provided herein are prime-boost regimens and materials used therein. The prime-boost regimens enhance the immune response to a target antigen. The vaccines used for boost are comprised of recombinant attenuated metabolically active Listeria that encodes an expressible antigen that is cross-reactive with the target antigen. In some examples, the immune response is a cellular immune response.
    Type: Application
    Filed: July 17, 2007
    Publication date: September 16, 2010
    Applicant: ANZA THERAPEUTICS, INC.
    Inventors: Thomas W. Dubensky, JR., Dirk G. Brockstedt, Meredith Leong, Keith S. Bahjat
  • Patent number: 7771979
    Abstract: Methods are provided for generating immune responses utilizing alphavirus-based vector systems.
    Type: Grant
    Filed: February 27, 2007
    Date of Patent: August 10, 2010
    Assignee: Novartis Vaccines & Diagnostics, Inc.
    Inventors: John Polo, Thomas W. Dubensky, Jr., Ilya Frolov, Jason P. Gardner, Gillis Otten, Susan Barnett, David A. Driver
  • Publication number: 20100173412
    Abstract: The present disclosure provides compositions and methods for utilizing recombinant alphavirus vectors.
    Type: Application
    Filed: August 10, 2009
    Publication date: July 8, 2010
    Inventors: Thomas W. Dubensky, JR., John M. Polo, Carlos E. Ibanez, Stephen M.W. Chang, Douglas J. Jolly, David A. Driver, Barbara A. Belli
  • Patent number: 7744900
    Abstract: Expression cassettes are provided comprising a promoter operably linked to a nucleic acid molecule which, when transcribed in vivo, forms double-stranded RNA that induces the production of interferon. Expression cassettes also are provided comprising a promoter operably linked to a ribozyme or antisense nucleic acid molecule which, when transcribed in vivo, forms a ribozyme or antisense RNA molecule that stimulates an immune response. In addition, expression cassettes are provided comprising a promoter operably linked to a ribozyme or antisense nucleic acid molecule which, when transcribed in vivo, stimulates apoptosis. Finally, gene delivery vectors are provided which contain such expression cassettes, host cells containing the gene delivery vectors, and methods of utilizing the expression cassettes, gene delivery vectors, and host cells.
    Type: Grant
    Filed: April 29, 2008
    Date of Patent: June 29, 2010
    Assignee: Novartis Vaccines and Diagnostics, Inc.
    Inventors: Thomas W Dubensky, Jr., John M Polo, Barbara A Belli, Silvia Perri, Timothy C Fong
  • Publication number: 20100129406
    Abstract: The invention provides Listeria that, in addition to comprising polynucleotides that encode heterologous polypeptides such as tumor or infectious agent antigens, have been modified to express holin proteins that facilitate the delivery of the heterologous polypeptides, or polynucleotides encoding the same, outside of the bacteria. In some particular embodiments, the Listeria generate viral-derived, self-replicating RNAs that direct expression of the heterologous polypeptides in the cytosol of infected cells. Methods of using the Listeria, and compositions thereof, to induce immune response and/or in the prevention or treatment of disease are also provided. Methods of producing the bacteria are also provided.
    Type: Application
    Filed: August 31, 2007
    Publication date: May 27, 2010
    Applicant: ANZA THERAPEUTICS, INC.
    Inventors: Peter M. Lauer, Thomas W. Dubensky, JR., William S. Luckett, William G. Hanson
  • Patent number: 7695725
    Abstract: Free-living microbes are provided in which the nucleic acid has been modified so that the microbe is attenuated for proliferation and/or which comprise genetic mutations that attenuate the ability of the microbe to repair its nucleic acid. Methods of using the modified microbes for the loading, activation, and/or maturation of antigen-presenting cells are also provided. Vaccine compositions comprising the modified microbes and/or the antigen-presenting cells and methods of using the vaccines are also provided. The microbes may be further modified to include heterologous antigens, such as tumor antigens or infectious disease antigens, for use as a vaccine against cancer or infectious diseases.
    Type: Grant
    Filed: June 30, 2004
    Date of Patent: April 13, 2010
    Assignee: Aduro Biotech
    Inventors: Thomas W. Dubensky, Jr., Dirk G. Brockstedt, John E. Hearst, David N. Cook, William S. Luckett, Jr.
  • Patent number: 7691393
    Abstract: The present invention provides Listeria that are attenuated for entry into non-phagocytic cells as well as a variety of methods of inducing immune responses involving administering compositions comprising the attenuated Listeria. Some of the attenuated Listeria are mutant Listeria that comprise at least one mutation in a gene encoding an invasin, such as an internalin. Some of the attenuated Listeria are further attenuated for cell-to-cell spread. Pharmaceutical compositions and vaccines useful in the methods of the invention are further provided. Methods of making and improving vaccines are also provided.
    Type: Grant
    Filed: February 6, 2004
    Date of Patent: April 6, 2010
    Assignee: Anza Therapeutics, Inc.
    Inventors: Thomas W. Dubensky, Jr., Dirk G. Brockstedt, David N. Cook