Abstract: A compiler tool set manages the complexity of efficiently maintaining multiple versions of a program. This tool set generates various version types of a program in a manner that is easy to use, that is compatible with existing program generation build scripts and makefiles, and that minimizes recompilation. When the compiler of the present invention is invoked by a programmer command, a build script, or a makefile, it produces an augmented object file that contains sufficient information to subsequently generate different versions of the program. Subsequently, the linker of the present invention is invoked specifying the augmented object files to be linked and the version type to be produced as an executable file. The linker maintains a program and object module database that can hold substitution object modules corresponding to each (augmented object file, version type) pair.