Patents by Inventor Tommi Pisto

Tommi Pisto has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20180181705
    Abstract: An aspect of the present invention is a computer executable method for characterizing, e.g. for diagnostic purposes, utilizing a reference database, a query sample based on the measurements of biological components. The method is characterized in that it comprises the steps of calculating an expression match score (EM-score) indicating the likelihood of having the component level observed in the query sample in each of the sample categories of the reference database, calculating for the components of the sample, using e.g. the EM-score, tissue specificity score (TS-score), that expresses how uniquely a component identifies the query sample as belonging to a certain sample category, calculating, utilizing e.g. the TS-score, overall similarity of the sample in relation to a tissue category of the reference database, and storing at least some resulting characterization data to a memory device or outputting the data to an output device of a computer.
    Type: Application
    Filed: February 23, 2018
    Publication date: June 28, 2018
    Inventors: Sami KILPINEN, Kalle OJALA, Timo AHOPELTO, Tommi PISTO
  • Patent number: 9940383
    Abstract: An aspect of the present invention is a computer executable method for characterizing, e.g. for diagnostic purposes, utilizing a reference database, a query sample tissue based on the gene expression data of the tissue. The method is characterized in that it comprises the steps of calculating an expression match score (EM-score) indicating the likelihood of having the gene expression level observed in the query sample in each of the tissue categories of the reference database, calculating for the genes of the sample tissue, using e.g. the EM-score, tissue specificity score (TS-score), that expresses how uniquely a gene identifies the query sample as belonging to a certain tissue category, calculating, utilizing e.g. the TS-score, overall similarity of the sample tissue in relation to a tissue category of the reference database, and storing at least some resulting characterization data to a memory device or outputting the data to an output device of a computer.
    Type: Grant
    Filed: March 23, 2015
    Date of Patent: April 10, 2018
    Assignee: MEDISAPIENS OY
    Inventors: Sami Kilpinen, Kalle Ojala, Timo Ahopelto, Tommi Pisto
  • Publication number: 20150199477
    Abstract: An aspect of the present invention is a computer executable method for characterizing, e.g. for diagnostic purposes, utilizing a reference database, a query sample tissue based on the gene expression data of the tissue. The method is characterized in that it comprises the steps of calculating an expression match score (EM-score) indicating the likelihood of having the gene expression level observed in the query sample in each of the tissue categories of the reference database, calculating for the genes of the sample tissue, using e.g. the EM-score, tissue specificity score (TS-score), that expresses how uniquely a gene identifies the query sample as belonging to a certain tissue category, calculating, utilizing e.g. the TS-score, overall similarity of the sample tissue in relation to a tissue category of the reference database, and storing at least some resulting characterization data to a memory device or outputting the data to an output device of a computer.
    Type: Application
    Filed: March 23, 2015
    Publication date: July 16, 2015
    Inventors: Sami KILPINEN, Kalle OJALA, Timo AHOPELTO, Tommi PISTO
  • Patent number: 9020934
    Abstract: An aspect of the present invention is a computer executable method for characterizing, e.g. for diagnostic purposes, utilizing a reference database, a query sample tissue based on the gene expression data of the tissue. The method is characterized in that it comprises the steps of calculating an expression match score (EM-score) indicating the likelihood of having the gene expression level observed in the query sample in each of the tissue categories of the reference database, calculating for the genes of the sample tissue, using e.g. the EM-score, tissue specificity score (TS-score), that expresses how uniquely a gene identifies the query sample as belonging to a certain tissue category, calculating, utilizing e.g. the TS-score, overall similarity of the sample tissue in relation to a tissue category of the reference database, and storing at least some resulting characterization data to a memory device or outputting the data to an output device of a computer.
    Type: Grant
    Filed: March 11, 2011
    Date of Patent: April 28, 2015
    Assignee: Medisapiens Oy
    Inventors: Sami Kilpinen, Kalle Ojala, Timo Ahopelto, Tommi Pisto
  • Publication number: 20130066860
    Abstract: An aspect of the present invention is a computer executable method for characterizing, e.g. for diagnostic purposes, utilizing a reference database, a query sample tissue based on the gene expression data of the tissue. The method is characterized in that it comprises the steps of calculating an expression match score (EM-score) indicating the likelihood of having the gene expression level observed in the query sample in each of the tissue categories of the reference database, calculating for the genes of the sample tissue, using e.g. the EM-score, tissue specificity score (TS-score), that expresses how uniquely a gene identifies the query sample as belonging to a certain tissue category, calculating, utilizing e.g. the TS-score, overall similarity of the sample tissue in relation to a tissue category of the reference database, and storing at least some resulting characterization data to a memory device or outputting the data to an output device of a computer.
    Type: Application
    Filed: March 11, 2011
    Publication date: March 14, 2013
    Applicant: MEDISAPIENS OY
    Inventors: Sami Kilpinen, Kalle Ojala, Timo Ahopelto, Tommi Pisto