Patents by Inventor Tyler Lopez

Tyler Lopez has filed for patents to protect the following inventions. This listing includes patent applications that are pending as well as patents that have already been granted by the United States Patent and Trademark Office (USPTO).

  • Publication number: 20220403353
    Abstract: Provided herein are engineered variants of archaeal, prokaryotic, and eukaryotic polymerases that exhibit enhanced thermostability, enhanced incorporation of 3? modified nucleotides, and improved uracil-tolerance, in polymerase-catalyzed nucleotide extension reactions relative to wild type polymerase enzymes. Also provided are uses of the engineered polymerases for forming complexed polymerases, forming binding complexes and forming ternary complexes, and uses for conducting nucleic acid sequencing reactions.
    Type: Application
    Filed: March 25, 2022
    Publication date: December 22, 2022
    Inventors: Mark Ambroso, Tyler Lopez, Michael Klein, Virginia Saade, Matthew Kellinger
  • Publication number: 20220403352
    Abstract: Provided herein are engineered variants of archaeal, prokaryotic, and eukaryotic polymerases that exhibit enhanced thermostability, enhanced incorporation of 3? modified nucleotides, and improved uracil-tolerance, in polymerase-catalyzed nucleotide extension reactions relative to wild type polymerase enzymes. Also provided are uses of the engineered polymerases for forming complexed polymerases, forming binding complexes and forming ternary complexes, and uses for conducting nucleic acid sequencing reactions.
    Type: Application
    Filed: March 25, 2022
    Publication date: December 22, 2022
    Inventors: Mark Ambroso, Tyler Lopez, Michael Klein, Virginia Saade, Matthew Kellinger
  • Publication number: 20220186310
    Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
    Type: Application
    Filed: October 26, 2021
    Publication date: June 16, 2022
    Inventors: Sinan Arslan, Molly Min HE, Matthew KELLINGER, Jake LEVIEUX, Michael PREVITE, Junhua ZHAO, Su ZHANG, Tyler LOPEZ
  • Publication number: 20210373000
    Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
    Type: Application
    Filed: August 10, 2021
    Publication date: December 2, 2021
    Inventors: Sinan ARSLAN, Molly HE, Matthew KELLINGER, Jake LEVIEUX, Michael PREVITE, Junhua ZHAO, Su ZHANG, Tyler LOPEZ
  • Publication number: 20210139884
    Abstract: Provided herein are compositions and methods for the incorporation of unnatural nucleotides using mutant polymerases, such as reverse transcriptases. Further provided herein are methods of detection and sequencing of polynucleotide sequences. In some aspects, the compositions and methods are used enhance the efficiency and speed of detecting nucleotide bases. The methods and compositions described herein may further reduce time, cost, or scale of devices for next generation sequencing platforms.
    Type: Application
    Filed: December 11, 2020
    Publication date: May 13, 2021
    Inventors: Matthew KELLINGER, Molly HE, Tyler LOPEZ
  • Publication number: 20210123911
    Abstract: Multivalent binding compositions including a particle-nucleotide conjugate having a plurality of copies of a nucleotide attached to the particle are described. The multivalent binding compositions allow one to localize detectable signals to active regions of biochemical interaction, e.g., sites of protein-protein interaction, protein-nucleic acid interaction, nucleic acid hybridization, or enzymatic reaction, and can be used to identify sites of base incorporation in elongating nucleic acid chains during polymerase reactions and to provide improved base discrimination for sequencing and array based applications.
    Type: Application
    Filed: October 5, 2020
    Publication date: April 29, 2021
    Inventors: Sinan ARSLAN, Molly HE, Matthew KELLINGER, Jake LEVIEUX, Michael PREVITE, Junhua ZHAO, Su ZHANG, Tyler LOPEZ
  • Patent number: 10975166
    Abstract: Certain embodiments of the invention provide an antibody, or a fragment thereof, comprising a heavy chain complementarity-determining region 3 (CDR-H3) having at least about 80% sequence identity to a sequence described herein, as well as methods of use thereof.
    Type: Grant
    Filed: December 18, 2018
    Date of Patent: April 13, 2021
    Assignee: The Regents of the University of California
    Inventors: Xin Ge, Dong Hyun Nam, Tyler Lopez
  • Publication number: 20210087296
    Abstract: Certain embodiments of the invention provide an antibody, or a fragment thereof, comprising a heavy chain complementarity-determining region 3 (CDR-H3) having at least about 80% sequence identity to a sequence described herein, as well as methods of use thereof.
    Type: Application
    Filed: December 3, 2020
    Publication date: March 25, 2021
    Applicant: The Regents of the University of California
    Inventors: Xin Ge, Dong Hyun Nam, Tyler Lopez
  • Publication number: 20200392251
    Abstract: Certain embodiments provide isolated anti-MMP-14 antibodies or fragments thereof, isolated anti-MMP-12 antibodies or fragments thereof, isolated anti-BACE-1 antibodies or fragments thereof, isolated anti-Alp2 antibodies or fragments thereof, and isolated anti-capthesin B antibodies or fragments thereof, as well as methods of use thereof.
    Type: Application
    Filed: May 21, 2020
    Publication date: December 17, 2020
    Inventors: Xin Ge, Tyler Lopez, Ki Baek Lee
  • Publication number: 20200370113
    Abstract: Compositions and methods comprising the use of polymerase-nucleotide conjugates for nucleic acid sequencing and analysis applications are described.
    Type: Application
    Filed: June 8, 2020
    Publication date: November 26, 2020
    Inventors: Matthew Kellinger, Michael Previte, Molly He, Tyler Lopez
  • Publication number: 20190185581
    Abstract: Certain embodiments of the invention provide an antibody, or a fragment thereof, comprising a heavy chain complementarity-determining region 3 (CDR-H3) having at least about 80% sequence identity to a sequence described herein, as well as methods of use thereof.
    Type: Application
    Filed: December 18, 2018
    Publication date: June 20, 2019
    Applicant: The Regents of the University of California
    Inventors: Xin Ge, Dong Hyun Nam, Tyler Lopez